Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0002712

Physical Location & Seq

Genomic Coordinates Reverse (-)

29979775 .. 29986874

Gene Structure 7100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG298600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGTCTGAAGCATCTTCTAGATGGCATCCTTTAAAGCCATTCATAAGTTGGCTGATGGCACTCATTTTGCTCAAAATCAGTTTTGCATCTACAGAACCTGATGTTGAAGGTGAAGCATTAATCGATTTGCTTAATGCACTGAATGATTCCAATGGCCGAATAACTGATTGGAATAATCATCTTGTGAGCCCATGTTTTAGCTGGTCTCATGTCACTTGTAGAAATGGAAATGTCATATCCCTGAGCCTGGCATCAAATGGATTTTCTGGAACACTTTCTCCTTCCATTATCAAACTCAAATTTTTGTCCAGCCTGGACTTCCAGGATAATAGTATAACGGGTCTGTTACCCGTTTATCTTGCCAACTTGACACATCTCCAGAATCTAAACTTTGCAAATAATAACTTCAGAGGTCCTATACCCAATACTTGGGGTCAACTTTCCAATCTAAAGCACTTGGTTTTGAGGGGTAATGACATCTCTGGTGATATTCCGGATTCACTTTCTAATATCACAGGGTTGGCTGAATTGGATCTTTCATCTAATGATTTAGAGGGAAAAATTCCAATGCAACTCTTCACGGTTCATACTTTCAATTTTACAGGAACTCATCTTACTTGTGGTTCTAGCTTGAACCAGCCTTGTGCTTCTGGCTCTTCACTCGTTTCAACCAAGAAATCAAAACTTGGAAGAGTTATAACTTTGGCAAGTTGTGGTGTGACAATACTTCTTTTTATCGGGGCTATTTTTGGATATCGATATTATCACATGCAGAGTCTGAAGCATGAGGTGTTTGTTGATGTTGCGGAAAAGACTGATGTTTTTGGATATGGTATCACACTTCTCGAACTTGTCACTGGTCAGCGAGCTATAGATTTTGCTCGGCTTGAAGAAGAGGAGGATGTTCTTCTGCTTGACCATATCAAGAAGCTGCTGAGAGAAAATAGACTTGATGACATTGTGGATGGAAATATGAAGACCTATGATGAAAAAGAAGTTGGTACTGTCATTCAGGTTGCATTGCTCTGCACCCAGAGCTCACCTGAGGACCGTCCAACAATGGCAGAAGTGGTTAGATTGCTGCAGGGAGTGGATCTAGCAGAGAGATGGGCTGAGTGGGAGCAACTTGAAGATGTAAGGAGTCGTGAATTCTCACTCTTGTCGCACCAGTTTGCTTGGGCTGAGGAGACTACACATGATCAAGTAGCTATACAGCTGTCCAAGGCAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

410

Amino Acids

45.62

Weight (kDa)

5.18

Isoelectric Point (pI)

29.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	36 - 73	1.8e-09	Leucine rich repeat N-terminal domain
LRR_14	PF23598	90 - 184	1.3e-07	Leucine-rich repeat region
LRR_8	PF13855	145 - 184	3e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63710 AT5G63710 AT5G63710 AT5G63710
fragaria_vesca	FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740
malus_domestica	MD15G1139900.v1.1
prunus_persica	Prupe.4G284100_v2.0.a1 Prupe.4G284400_v2.0.a1 Prupe.4G284400_v2.0.a1 Prupe.4G285600_v2.0.a1 Prupe.4G285600_v2.0.a1 Prupe.4G285600_v2.0.a1
pyrus_communis	pycom15g12640
rosa_chinensis	RchiOBHm_Chr3g0484651
rosa_laevigata	RLG00000023209
rosa_multiflora	Rmu_sc0005467.1_g000001 Rmu_sc0006192.1_g000001
rosa_roxburghii	Rroxscaffold_6G00397540
rosa_rugosa	Rorug03G0212900 Rorug03G0213000 Rorug03G0213100 Rorug03G0213200
rosa_samantha	Rh3AG263000 Rh3AG263200 Rh3BG298600 Rh3CG295700 Rh3CG295900 Rh3DG291900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	698
AccB7I	CCANNNNNTGG	1 cut(s)	429
AccIII	TCCGGA	1 cut(s)	493
AciI	CCGC	1 cut(s)	806
AclWI	GGATC	2 cut(s)	540, 1101
AcoI	YGGCCR	1 cut(s)	154
AcsI	RAATTY	3 cut(s)	299, 561, 1148
AcuI	CTGAAG	3 cut(s)	27, 391, 800
AfaI	GTAC	1 cut(s)	1003
AfiI	CCNNNNNNNGG	2 cut(s)	247, 429
AgsI	TTSAA	6 cut(s)	107, 595, 634, 669, 890, 1130
AjnI	CCWGG	3 cut(s)	246, 312, 321
AjuI	GAANNNNNNNTTGG	4 cut(s)	151, 183, 981, 1013
AloI	GAACNNNNNNTCC	2 cut(s)	262, 294
AluBI	AGCT	7 cut(s)	201, 630, 869, 931, 1038, 1208, 1216
AluI	AGCT	7 cut(s)	201, 630, 869, 931, 1038, 1208, 1216
Alw21I	GWGCWC	1 cut(s)	1040
Alw26I	GTCTC	2 cut(s)	210, 1181
AlwI	GGATC	2 cut(s)	540, 1101
AlwNI	CAGNNNCTG	2 cut(s)	98, 778
Aor13HI	TCCGGA	1 cut(s)	493
AoxI	GGCC	1 cut(s)	154
ApeKI	GCWGC	2 cut(s)	931, 1081
ApoI	RAATTY	3 cut(s)	299, 561, 1148
AseI	ATTAAT	1 cut(s)	119
Asp700I	GAANNNNTTC	1 cut(s)	274
AspS9I	GGNCC	2 cut(s)	413, 1048
AsuHPI	GGTGA	3 cut(s)	122, 497, 1032
AvaII	GGWCC	2 cut(s)	413, 1048
AxyI	CCTNAGG	1 cut(s)	1044
BanII	GRGCYC	2 cut(s)	191, 1040
BbsI	GAAGAC	1 cut(s)	983
Bbv12I	GWGCWC	1 cut(s)	1040
BbvCI	CCTCAGC	1 cut(s)	1182
BbvI	GCAGC	2 cut(s)	918, 1068
BccI	CCATC	4 cut(s)	15, 49, 959, 1101
BciT130I	CCWGG	3 cut(s)	248, 314, 323
BclI	TGATCA	1 cut(s)	1198
BcoDI	GTCTC	2 cut(s)	210, 1181
BfaI	CTAG	3 cut(s)	18, 627, 1097
BfmI	CTRYAG	3 cut(s)	90, 870, 1082
BisI	GCNGC	2 cut(s)	932, 1082
BlsI	GCNGC	2 cut(s)	933, 1083
Bme1390I	CCNGG	3 cut(s)	248, 314, 323
Bme18I	GGWCC	2 cut(s)	413, 1048
BmgT120I	GGNCC	2 cut(s)	413, 1048
BmrFI	CCNGG	3 cut(s)	248, 314, 323
BmsI	GCATC	4 cut(s)	20, 34, 95, 260
BpiI	GAAGAC	1 cut(s)	983
BpmI	CTGGAG	1 cut(s)	362
Bpu10I	CCTNAGC	2 cut(s)	242, 1182
Bsa29I	ATCGAT	2 cut(s)	123, 757
BsaI	GGTCTC	1 cut(s)	210
BsaJI	CCNNGG	1 cut(s)	1221
BsaWI	WCCGGW	1 cut(s)	493
BsaXI	ACNNNNNCTCC	2 cut(s)	262, 292
Bsc4I	CCNNNNNNNGG	2 cut(s)	247, 429
Bse1I	ACTGG	2 cut(s)	862, 1168
Bse21I	CCTNAGG	1 cut(s)	1044
Bse3DI	GCAATG	1 cut(s)	1019
BseAI	TCCGGA	1 cut(s)	493
BseBI	CCWGG	3 cut(s)	248, 314, 323
BseCI	ATCGAT	2 cut(s)	123, 757
BseDI	CCNNGG	1 cut(s)	1221
BseGI	GGATG	3 cut(s)	25, 907, 970
BseLI	CCNNNNNNNGG	2 cut(s)	247, 429
BseMI	GCAATG	1 cut(s)	1019
BseMII	CTCAG	5 cut(s)	233, 926, 1035, 1104, 1173
BseNI	ACTGG	2 cut(s)	862, 1168
BseRI	GAGGAG	2 cut(s)	911, 1199
BseXI	GCAGC	2 cut(s)	918, 1068
BsgI	GTGCAG	1 cut(s)	1012
BshFI	GGCC	1 cut(s)	156
BshVI	ATCGAT	2 cut(s)	123, 757
BsiHKAI	GWGCWC	1 cut(s)	1040
BsiSI	CCGG	1 cut(s)	494
BslI	CCNNNNNNNGG	2 cut(s)	247, 429
BsmAI	GTCTC	2 cut(s)	210, 1181
BsnI	GGCC	1 cut(s)	156
Bso31I	GGTCTC	1 cut(s)	210
Bsp1286I	GDGCHC	2 cut(s)	191, 1040
Bsp13I	TCCGGA	1 cut(s)	493
Bsp143I	GATC	3 cut(s)	532, 1093, 1198
BspACI	CCGC	1 cut(s)	806
BspANI	GGCC	1 cut(s)	156
BspCNI	CTCAG	5 cut(s)	234, 927, 1036, 1105, 1174
BspDI	ATCGAT	2 cut(s)	123, 757
BspEI	TCCGGA	1 cut(s)	493
BspMAI	CTGCAG	1 cut(s)	1086
BspPI	GGATC	2 cut(s)	540, 1101
BspQI	GCTCTTC	1 cut(s)	661
BspTNI	GGTCTC	1 cut(s)	210
BsrDI	GCAATG	1 cut(s)	1019
BsrI	ACTGG	2 cut(s)	862, 1168
BssECI	CCNNGG	1 cut(s)	1221
BssMI	GATC	3 cut(s)	532, 1093, 1198
BssT1I	CCWWGG	1 cut(s)	1221
Bst2UI	CCWGG	3 cut(s)	248, 314, 323
Bst4CI	ACNGT	3 cut(s)	583, 1006, 1052
Bst6I	CTCTTC	4 cut(s)	581, 661, 685, 888
BstC8I	GCNNGC	1 cut(s)	867
BstDEI	CTNAG	5 cut(s)	242, 935, 1044, 1113, 1182
BstF5I	GGATG	3 cut(s)	25, 907, 970
BstKTI	GATC	3 cut(s)	535, 1096, 1201
BstMAI	GTCTC	2 cut(s)	210, 1181
BstMBI	GATC	3 cut(s)	532, 1093, 1198
BstMWI	GCNNNNNNNGC	1 cut(s)	1035
BstNI	CCWGG	3 cut(s)	248, 314, 323
BstNSI	RCATGY	1 cut(s)	772
BstSCI	CCNGG	3 cut(s)	246, 312, 321
BstSFI	CTRYAG	3 cut(s)	90, 870, 1082
BstV1I	GCAGC	2 cut(s)	918, 1068
BstV2I	GAAGAC	1 cut(s)	983
BstX2I	RGATCY	2 cut(s)	532, 1093
BstYI	RGATCY	2 cut(s)	532, 1093
Bsu15I	ATCGAT	2 cut(s)	123, 757
Bsu36I	CCTNAGG	1 cut(s)	1044
BsuRI	GGCC	1 cut(s)	156
BsuTUI	ATCGAT	2 cut(s)	123, 757
BtsCI	GGATG	3 cut(s)	25, 907, 970
BtsIMutI	CAGTG	2 cut(s)	137, 855
Cac8I	GCNNGC	1 cut(s)	867
CaiI	CAGNNNCTG	2 cut(s)	98, 778
Cfr13I	GGNCC	2 cut(s)	413, 1048
ClaI	ATCGAT	2 cut(s)	123, 757
Csp6I	GTAC	1 cut(s)	1002
CviAII	CATG	5 cut(s)	192, 209, 769, 785, 1196
CviQI	GTAC	1 cut(s)	1002
DdeI	CTNAG	5 cut(s)	242, 935, 1044, 1113, 1182
DpnI	GATC	3 cut(s)	534, 1095, 1200
DpnII	GATC	3 cut(s)	532, 1093, 1198
DraI	TTTAAA	1 cut(s)	33
EaeI	YGGCCR	1 cut(s)	154
Eam1104I	CTCTTC	4 cut(s)	581, 661, 685, 888
EarI	CTCTTC	4 cut(s)	581, 661, 685, 888
Ecl136II	GAGCTC	1 cut(s)	1038
Eco130I	CCWWGG	1 cut(s)	1221
Eco24I	GRGCYC	2 cut(s)	191, 1040
Eco31I	GGTCTC	1 cut(s)	210
Eco32I	GATATC	1 cut(s)	755
Eco47I	GGWCC	2 cut(s)	413, 1048
Eco53kI	GAGCTC	1 cut(s)	1038
Eco57I	CTGAAG	3 cut(s)	27, 391, 800
Eco81I	CCTNAGG	1 cut(s)	1044
EcoICRI	GAGCTC	1 cut(s)	1038
EcoO109I	RGGNCCY	1 cut(s)	413
EcoRI	GAATTC	1 cut(s)	1148
EcoRII	CCWGG	3 cut(s)	246, 312, 321
EcoRV	GATATC	1 cut(s)	755
EcoT14I	CCWWGG	1 cut(s)	1221
EcoT38I	GRGCYC	2 cut(s)	191, 1040
ErhI	CCWWGG	1 cut(s)	1221
FaeI	CATG	5 cut(s)	195, 212, 772, 788, 1199
FatI	CATG	5 cut(s)	191, 208, 768, 784, 1195
FbaI	TGATCA	1 cut(s)	1198
Fnu4HI	GCNGC	2 cut(s)	932, 1082
FokI	GGATG	3 cut(s)	12, 914, 977
FriOI	GRGCYC	2 cut(s)	191, 1040
Fsp4HI	GCNGC	2 cut(s)	932, 1082
FspBI	CTAG	3 cut(s)	18, 627, 1097
GluI	GCNGC	2 cut(s)	932, 1082
GsuI	CTGGAG	1 cut(s)	362
HaeIII	GGCC	1 cut(s)	156
HapII	CCGG	1 cut(s)	494
Hin1II	CATG	5 cut(s)	195, 212, 772, 788, 1199
HincII	GTYRAC	1 cut(s)	437
HindII	GTYRAC	1 cut(s)	437
HinfI	GANTC	5 cut(s)	146, 382, 497, 775, 1141
HpaII	CCGG	1 cut(s)	494
HphI	GGTGA	3 cut(s)	122, 497, 1032
Hpy166II	GTNNAC	1 cut(s)	437
Hpy188I	TCNGA	3 cut(s)	7, 410, 780
Hpy188III	TCNNGA	7 cut(s)	18, 267, 379, 494, 845, 925, 1145
Hpy8I	GTNNAC	1 cut(s)	437
HpyAV	CCTTC	2 cut(s)	101, 291
HpyCH4III	ACNGT	3 cut(s)	583, 1006, 1052
HpyCH4V	TGCA	8 cut(s)	86, 137, 395, 571, 772, 1019, 1029, 1084
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1035
HpyF3I	CTNAG	5 cut(s)	242, 935, 1044, 1113, 1182
Hsp92II	CATG	5 cut(s)	195, 212, 772, 788, 1199
Kpn2I	TCCGGA	1 cut(s)	493
Ksp22I	TGATCA	1 cut(s)	1198
Kzo9I	GATC	3 cut(s)	532, 1093, 1198
LguI	GCTCTTC	1 cut(s)	661
LmnI	GCTCC	1 cut(s)	1120
Lsp1109I	GCAGC	2 cut(s)	918, 1068
LweI	GCATC	4 cut(s)	20, 34, 95, 260
MaeI	CTAG	3 cut(s)	18, 627, 1097
MaeIII	GTNAC	4 cut(s)	211, 345, 718, 853
MalI	GATC	3 cut(s)	534, 1095, 1200
MboI	GATC	3 cut(s)	532, 1093, 1198
MboII	GAAGA	9 cut(s)	6, 568, 648, 702, 899, 902, 905, 988, 1142
MflI	RGATCY	2 cut(s)	532, 1093
MhlI	GDGCHC	2 cut(s)	191, 1040
MluCI	AATT	5 cut(s)	299, 527, 561, 595, 1148
MlyI	GAGTC	2 cut(s)	784, 1150
MmeI	TCCRAC	1 cut(s)	1079
MnlI	CCTC	8 cut(s)	404, 459, 547, 781, 889, 892, 1039, 1177
MroI	TCCGGA	1 cut(s)	493
MroXI	GAANNNNTTC	1 cut(s)	274
MseI	TTAA	3 cut(s)	32, 119, 132
MspA1I	CMGCKG	1 cut(s)	1216
MspI	CCGG	1 cut(s)	494
MspR9I	CCNGG	3 cut(s)	248, 314, 323
MvaI	CCWGG	3 cut(s)	248, 314, 323
MwoI	GCNNNNNNNGC	1 cut(s)	1035
NdeII	GATC	3 cut(s)	532, 1093, 1198
NlaIII	CATG	5 cut(s)	195, 212, 772, 788, 1199
NmeAIII	GCCGAG	1 cut(s)	862
NmuCI	GTSAC	3 cut(s)	211, 718, 853
NspI	RCATGY	1 cut(s)	772
PciSI	GCTCTTC	1 cut(s)	661
PdmI	GAANNNNTTC	1 cut(s)	274
PfeI	GAWTC	3 cut(s)	146, 382, 497
PflMI	CCANNNNNTGG	1 cut(s)	429
PfoI	TCCNGGA	1 cut(s)	321
PkrI	GCNGC	2 cut(s)	933, 1083
PleI	GAGTC	2 cut(s)	783, 1149
PpsI	GAGTC	2 cut(s)	783, 1149
PpuMI	RGGWCCY	1 cut(s)	413
PshBI	ATTAAT	1 cut(s)	119
PsiI	TTATAA	1 cut(s)	698
Psp124BI	GAGCTC	1 cut(s)	1040
Psp5II	RGGWCCY	1 cut(s)	413
Psp6I	CCWGG	3 cut(s)	246, 312, 321
PspGI	CCWGG	3 cut(s)	246, 312, 321
PspPI	GGNCC	2 cut(s)	413, 1048
PspPPI	RGGWCCY	1 cut(s)	413
PsrI	GAACNNNNNNTAC	2 cut(s)	598, 630
PstI	CTGCAG	1 cut(s)	1086
PstNI	CAGNNNCTG	2 cut(s)	98, 778
PsuI	RGATCY	2 cut(s)	532, 1093
PvuII	CAGCTG	1 cut(s)	1216
RsaI	GTAC	1 cut(s)	1003
RsaNI	GTAC	1 cut(s)	1002
SacI	GAGCTC	1 cut(s)	1040
SapI	GCTCTTC	1 cut(s)	661
SaqAI	TTAA	3 cut(s)	32, 119, 132
SatI	GCNGC	2 cut(s)	932, 1082
Sau3AI	GATC	3 cut(s)	532, 1093, 1198
Sau96I	GGNCC	2 cut(s)	413, 1048
SchI	GAGTC	2 cut(s)	784, 1150
ScrFI	CCNGG	3 cut(s)	248, 314, 323
SduI	GDGCHC	2 cut(s)	191, 1040
SfaNI	GCATC	4 cut(s)	20, 34, 95, 260
SfcI	CTRYAG	3 cut(s)	90, 870, 1082
SinI	GGWCC	2 cut(s)	413, 1048
Sse9I	AATT	5 cut(s)	299, 527, 561, 595, 1148
SsiI	CCGC	1 cut(s)	806
SspMI	CTAG	3 cut(s)	18, 627, 1097
SstI	GAGCTC	1 cut(s)	1040
StyD4I	CCNGG	3 cut(s)	246, 312, 321
StyI	CCWWGG	1 cut(s)	1221
TaaI	ACNGT	3 cut(s)	583, 1006, 1052
TaqI	TCGA	3 cut(s)	123, 757, 846
TasI	AATT	5 cut(s)	299, 527, 561, 595, 1148
TfiI	GAWTC	3 cut(s)	146, 382, 497
Tru1I	TTAA	3 cut(s)	32, 119, 132
Tru9I	TTAA	3 cut(s)	32, 119, 132
TscAI	CASTG	2 cut(s)	144, 862
TseFI	GTSAC	3 cut(s)	211, 718, 853
TseI	GCWGC	2 cut(s)	931, 1081
Tsp45I	GTSAC	3 cut(s)	211, 718, 853
TspDTI	ATGAA	5 cut(s)	31, 528, 575, 989, 1002
TspRI	CASTG	2 cut(s)	144, 862
Van91I	CCANNNNNTGG	1 cut(s)	429
VpaK11BI	GGWCC	2 cut(s)	413, 1048
VspI	ATTAAT	1 cut(s)	119
XapI	RAATTY	3 cut(s)	299, 561, 1148
XbaI	TCTAGA	1 cut(s)	17
XceI	RCATGY	1 cut(s)	772
XcmI	CCANNNNNNNNNTGG	2 cut(s)	45, 198
XmnI	GAANNNNTTC	1 cut(s)	274
XspI	CTAG	3 cut(s)	18, 627, 1097

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.