Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002712

Physical Location & Seq

Genomic Coordinates Reverse (-)

31047002 .. 31050201

Gene Structure 3200 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44936

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGCAAAGTCTGAAGCATGAGGTGTTTGTTGATGTTTTGGGTGAAGATGACTGTAAAATTTCCTTTGGTCAATTGAGAAGATTTTCTTGGCGTGAAATTCAAATTGCCACAGATAATTTCGATGAGAATAACATAATTGGACAGGGAGGCTTTGGAAGAGTTTACAGAGGTGTTCTCTCAGACAATGTAAAAATTGCAGTGAAACGCCTTACCGACTATAACAGTCCTGGTGGAGAGGCTGCATTCCTGAGAGAAGTACAACTCATTAGTGTTGCAGTTCATAGGAATCTTTTACGGTTGATTGGCTTTTGTACAACTTCATCTGAGAGGGTCCTTGTTTATCCGTTCATGAAAAACCTGAGTGTTGCATATCGCTTGAGAGATCTGAAACCAGGAGAGAAAGGCTTGGACTGGCCAACAAGGAAGCGCATTGCTTTTGGTGCAGCCCATGGCTTGGAGTATCTACATGAGTATTGCAATCCTAAGATTATACACCGTGACTTGAAGGCTGCAAACATTCTTCTAGATGATTATTTTGAGCCTGTTCTTGGAGATTTTGGGCTAGCACAGCTGGTCGATACAAAAGCAACTCATGTTACTACTCAAGTGCGTGGTACCATGGGTCATATTGCCCCTGAATATTTGTCCACTGGAAAATCTTCAGAAAAGACTGATGTTTTTGGATATGGTATCACACTTCTCGAACTTGTCACTGGTCAGCGTGCTATAGATTTTGCTCGGCTTGAAGAAGAGGAGGATGTTCTTCTGCTTGACCATATCAAGAAGCTGCTGAGAGAAAATAGACTTGATGACATTGTGGATGGAAATATGAAGACCTATGATGAAAAAGAAGTTGGTACTGTCATTCAGGTTGCATTGCTCTGCACACAGAGCTCACCTGAGGACCGTCCAACAATGGCTGAAGTGGTTAGATTGCTGCAGGGAGTGGATCTAGCAGAGAGATGGGCTGAGTGGGAGCAACTTGAAGATGTAATGAGTCGTGAATTCTCACTCCTGTCGCACCAGTTTGCATGGGCTGAGGAGACTACACATGATCAAGTAGCTATACAGCTGTCCAAGGCAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

362

Amino Acids

41.1

Weight (kDa)

5.33

Isoelectric Point (pI)

33.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	41 - 310	4.9e-40	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	44 - 312	9.7e-42	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63710 AT5G63710 AT5G63710 AT5G63710
fragaria_vesca	FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740
malus_domestica	MD15G1139900.v1.1
prunus_persica	Prupe.4G284100_v2.0.a1 Prupe.4G284400_v2.0.a1 Prupe.4G284400_v2.0.a1 Prupe.4G285600_v2.0.a1 Prupe.4G285600_v2.0.a1 Prupe.4G285600_v2.0.a1
pyrus_communis	pycom15g12640
rosa_chinensis	RchiOBHm_Chr3g0484651
rosa_laevigata	RLG00000023209
rosa_multiflora	Rmu_sc0005467.1_g000001 Rmu_sc0006192.1_g000001
rosa_roxburghii	Rroxscaffold_6G00397540
rosa_rugosa	Rorug03G0212900 Rorug03G0213000 Rorug03G0213100 Rorug03G0213200
rosa_samantha	Rh3AG263000 Rh3AG263200 Rh3BG298600 Rh3CG295700 Rh3CG295900 Rh3DG291900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	614
AccB1I	GGYRCC	1 cut(s)	614
AccB7I	CCANNNNNTGG	1 cut(s)	454
AclWI	GGATC	1 cut(s)	957
AcoI	YGGCCR	1 cut(s)	413
AcsI	RAATTY	3 cut(s)	57, 96, 1004
AcuI	CTGAAG	3 cut(s)	32, 645, 942
AfaI	GTAC	4 cut(s)	258, 313, 616, 859
AfiI	CCNNNNNNNGG	2 cut(s)	454, 548
AgsI	TTSAA	4 cut(s)	101, 505, 746, 986
AjnI	CCWGG	2 cut(s)	226, 391
AjuI	GAANNNNNNNTTGG	4 cut(s)	70, 102, 837, 869
AluBI	AGCT	5 cut(s)	571, 787, 894, 1064, 1072
AluI	AGCT	5 cut(s)	571, 787, 894, 1064, 1072
Alw21I	GWGCWC	1 cut(s)	896
Alw26I	GTCTC	1 cut(s)	1037
AlwI	GGATC	1 cut(s)	957
AoxI	GGCC	1 cut(s)	413
ApeKI	GCWGC	5 cut(s)	239, 443, 509, 787, 937
ApoI	RAATTY	3 cut(s)	57, 96, 1004
Asp700I	GAANNNNTTC	2 cut(s)	82, 658
Asp718I	GGTACC	1 cut(s)	614
AspLEI	GCGC	1 cut(s)	429
AspS9I	GGNCC	2 cut(s)	331, 904
AsuHPI	GGTGA	2 cut(s)	53, 888
AsuNHI	GCTAGC	1 cut(s)	562
AvaII	GGWCC	2 cut(s)	331, 904
AxyI	CCTNAGG	1 cut(s)	900
BalI	TGGCCA	1 cut(s)	415
BanI	GGYRCC	1 cut(s)	614
BanII	GRGCYC	1 cut(s)	896
BbsI	GAAGAC	1 cut(s)	839
Bbv12I	GWGCWC	1 cut(s)	896
BbvCI	CCTCAGC	1 cut(s)	1038
BbvI	GCAGC	5 cut(s)	226, 455, 496, 774, 924
BccI	CCATC	2 cut(s)	815, 957
BciT130I	CCWGG	2 cut(s)	228, 393
BclI	TGATCA	1 cut(s)	1054
BcoDI	GTCTC	1 cut(s)	1037
BfaI	CTAG	3 cut(s)	524, 563, 953
BfmI	CTRYAG	2 cut(s)	726, 938
BglII	AGATCT	1 cut(s)	382
BisI	GCNGC	5 cut(s)	240, 444, 510, 788, 938
BlsI	GCNGC	5 cut(s)	241, 445, 511, 789, 939
Bme1390I	CCNGG	2 cut(s)	228, 393
Bme18I	GGWCC	2 cut(s)	331, 904
BmgT120I	GGNCC	2 cut(s)	331, 904
BmiI	GGNNCC	2 cut(s)	332, 616
BmrFI	CCNGG	2 cut(s)	228, 393
BmtI	GCTAGC	1 cut(s)	566
BpiI	GAAGAC	1 cut(s)	839
BplI	GAGNNNNNCTC	2 cut(s)	159, 191
Bpu10I	CCTNAGC	1 cut(s)	1038
BpuEI	CTTGAG	2 cut(s)	397, 588
BsaJI	CCNNGG	3 cut(s)	448, 618, 1077
Bsc4I	CCNNNNNNNGG	2 cut(s)	454, 548
Bse1I	ACTGG	4 cut(s)	416, 655, 718, 1024
Bse21I	CCTNAGG	1 cut(s)	900
Bse3DI	GCAATG	2 cut(s)	429, 875
BseBI	CCWGG	2 cut(s)	228, 393
BseDI	CCNNGG	3 cut(s)	448, 618, 1077
BseGI	GGATG	2 cut(s)	763, 826
BseLI	CCNNNNNNNGG	2 cut(s)	454, 548
BseMI	GCAATG	2 cut(s)	429, 875
BseMII	CTCAG	8 cut(s)	192, 239, 315, 350, 782, 891, 960, 1029
BseNI	ACTGG	4 cut(s)	416, 655, 718, 1024
BseRI	GAGGAG	2 cut(s)	767, 1055
BseXI	GCAGC	5 cut(s)	226, 455, 496, 774, 924
BsgI	GTGCAG	2 cut(s)	462, 868
BshFI	GGCC	1 cut(s)	415
BshNI	GGYRCC	1 cut(s)	614
BsiHKAI	GWGCWC	1 cut(s)	896
BslI	CCNNNNNNNGG	2 cut(s)	454, 548
BsmAI	GTCTC	1 cut(s)	1037
BsmI	GAATGC	1 cut(s)	242
BsnI	GGCC	1 cut(s)	415
Bsp1286I	GDGCHC	1 cut(s)	896
Bsp1407I	TGTACA	1 cut(s)	311
Bsp143I	GATC	3 cut(s)	382, 949, 1054
Bsp19I	CCATGG	2 cut(s)	448, 618
BspANI	GGCC	1 cut(s)	415
BspCNI	CTCAG	8 cut(s)	191, 240, 316, 351, 783, 892, 961, 1030
BspHI	TCATGA	1 cut(s)	348
BspLI	GGNNCC	2 cut(s)	332, 616
BspMAI	CTGCAG	1 cut(s)	942
BspOI	GCTAGC	1 cut(s)	566
BspPI	GGATC	1 cut(s)	957
BspT107I	GGYRCC	1 cut(s)	614
BsrDI	GCAATG	2 cut(s)	429, 875
BsrGI	TGTACA	1 cut(s)	311
BsrI	ACTGG	4 cut(s)	416, 655, 718, 1024
BssECI	CCNNGG	3 cut(s)	448, 618, 1077
BssMI	GATC	3 cut(s)	382, 949, 1054
BssT1I	CCWWGG	3 cut(s)	448, 618, 1077
Bst2UI	CCWGG	2 cut(s)	228, 393
Bst4CI	ACNGT	6 cut(s)	53, 224, 297, 497, 862, 908
Bst6I	CTCTTC	2 cut(s)	151, 744
BstAUI	TGTACA	1 cut(s)	311
BstC8I	GCNNGC	2 cut(s)	564, 723
BstDEI	CTNAG	9 cut(s)	178, 248, 324, 359, 483, 791, 900, 969, 1038
BstDSI	CCRYGG	2 cut(s)	448, 618
BstF5I	GGATG	2 cut(s)	763, 826
BstHHI	GCGC	1 cut(s)	429
BstKTI	GATC	3 cut(s)	385, 952, 1057
BstMAI	GTCTC	1 cut(s)	1037
BstMBI	GATC	3 cut(s)	382, 949, 1054
BstMWI	GCNNNNNNNGC	3 cut(s)	440, 568, 891
BstNI	CCWGG	2 cut(s)	228, 393
BstSCI	CCNGG	2 cut(s)	226, 391
BstSFI	CTRYAG	2 cut(s)	726, 938
BstV1I	GCAGC	5 cut(s)	226, 455, 496, 774, 924
BstV2I	GAAGAC	1 cut(s)	839
BstX2I	RGATCY	2 cut(s)	382, 949
BstYI	RGATCY	2 cut(s)	382, 949
Bsu36I	CCTNAGG	1 cut(s)	900
BsuRI	GGCC	1 cut(s)	415
BtgI	CCRYGG	2 cut(s)	448, 618
BtsCI	GGATG	2 cut(s)	763, 826
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	3 cut(s)	204, 648, 711
Cac8I	GCNNGC	2 cut(s)	564, 723
CciI	TCATGA	1 cut(s)	348
CfoI	GCGC	1 cut(s)	429
Cfr13I	GGNCC	2 cut(s)	331, 904
Csp6I	GTAC	4 cut(s)	257, 312, 615, 858
CviAII	CATG	8 cut(s)	17, 349, 449, 467, 593, 619, 1032, 1052
CviQI	GTAC	4 cut(s)	257, 312, 615, 858
DdeI	CTNAG	9 cut(s)	178, 248, 324, 359, 483, 791, 900, 969, 1038
DpnI	GATC	3 cut(s)	384, 951, 1056
DpnII	GATC	3 cut(s)	382, 949, 1054
EaeI	YGGCCR	1 cut(s)	413
Eam1104I	CTCTTC	2 cut(s)	151, 744
EarI	CTCTTC	2 cut(s)	151, 744
Ecl136II	GAGCTC	1 cut(s)	894
Eco130I	CCWWGG	3 cut(s)	448, 618, 1077
Eco24I	GRGCYC	1 cut(s)	896
Eco47I	GGWCC	2 cut(s)	331, 904
Eco53kI	GAGCTC	1 cut(s)	894
Eco57I	CTGAAG	3 cut(s)	32, 645, 942
Eco81I	CCTNAGG	1 cut(s)	900
EcoICRI	GAGCTC	1 cut(s)	894
EcoO109I	RGGNCCY	1 cut(s)	331
EcoRI	GAATTC	1 cut(s)	1004
EcoRII	CCWGG	2 cut(s)	226, 391
EcoT14I	CCWWGG	3 cut(s)	448, 618, 1077
EcoT38I	GRGCYC	1 cut(s)	896
ErhI	CCWWGG	3 cut(s)	448, 618, 1077
FaeI	CATG	8 cut(s)	20, 352, 452, 470, 596, 622, 1035, 1055
FalI	AAGNNNNNCTT	2 cut(s)	70, 102
FatI	CATG	8 cut(s)	16, 348, 448, 466, 592, 618, 1031, 1051
FbaI	TGATCA	1 cut(s)	1054
Fnu4HI	GCNGC	5 cut(s)	240, 444, 510, 788, 938
FokI	GGATG	2 cut(s)	770, 833
FriOI	GRGCYC	1 cut(s)	896
Fsp4HI	GCNGC	5 cut(s)	240, 444, 510, 788, 938
FspBI	CTAG	3 cut(s)	524, 563, 953
GlaI	GCGC	1 cut(s)	428
GluI	GCNGC	5 cut(s)	240, 444, 510, 788, 938
HaeIII	GGCC	1 cut(s)	415
HhaI	GCGC	1 cut(s)	429
Hin1II	CATG	8 cut(s)	20, 352, 452, 470, 596, 622, 1035, 1055
Hin6I	GCGC	1 cut(s)	427
HinP1I	GCGC	1 cut(s)	427
HinfI	GANTC	2 cut(s)	286, 997
HphI	GGTGA	2 cut(s)	53, 888
Hpy166II	GTNNAC	2 cut(s)	163, 648
Hpy188I	TCNGA	5 cut(s)	12, 181, 325, 387, 664
Hpy188III	TCNNGA	6 cut(s)	247, 349, 524, 701, 781, 1001
Hpy8I	GTNNAC	2 cut(s)	163, 648
HpyAV	CCTTC	1 cut(s)	499
HpyCH4III	ACNGT	6 cut(s)	53, 224, 297, 497, 862, 908
HpyF10VI	GCNNNNNNNGC	3 cut(s)	440, 568, 891
HpyF3I	CTNAG	9 cut(s)	178, 248, 324, 359, 483, 791, 900, 969, 1038
Hsp92II	CATG	8 cut(s)	20, 352, 452, 470, 596, 622, 1035, 1055
HspAI	GCGC	1 cut(s)	427
KpnI	GGTACC	1 cut(s)	618
Ksp22I	TGATCA	1 cut(s)	1054
Kzo9I	GATC	3 cut(s)	382, 949, 1054
LmnI	GCTCC	1 cut(s)	976
Lsp1109I	GCAGC	5 cut(s)	226, 455, 496, 774, 924
MaeI	CTAG	3 cut(s)	524, 563, 953
MaeIII	GTNAC	3 cut(s)	497, 595, 709
MalI	GATC	3 cut(s)	384, 951, 1056
MboI	GATC	3 cut(s)	382, 949, 1054
MfeI	CAATTG	1 cut(s)	71
MflI	RGATCY	2 cut(s)	382, 949
MhlI	GDGCHC	1 cut(s)	896
MlsI	TGGCCA	1 cut(s)	415
MluCI	AATT	8 cut(s)	57, 71, 96, 102, 115, 135, 192, 1004
MluNI	TGGCCA	1 cut(s)	415
MlyI	GAGTC	1 cut(s)	1006
MmeI	TCCRAC	1 cut(s)	935
MnlI	CCTC	9 cut(s)	13, 140, 161, 229, 321, 745, 748, 895, 1033
Mox20I	TGGCCA	1 cut(s)	415
MroXI	GAANNNNTTC	2 cut(s)	82, 658
MscI	TGGCCA	1 cut(s)	415
Msp20I	TGGCCA	1 cut(s)	415
MspA1I	CMGCKG	2 cut(s)	571, 1072
MspR9I	CCNGG	2 cut(s)	228, 393
MunI	CAATTG	1 cut(s)	71
Mva1269I	GAATGC	1 cut(s)	242
MvaI	CCWGG	2 cut(s)	228, 393
MwoI	GCNNNNNNNGC	3 cut(s)	440, 568, 891
NcoI	CCATGG	2 cut(s)	448, 618
NdeII	GATC	3 cut(s)	382, 949, 1054
NheI	GCTAGC	1 cut(s)	562
NlaIII	CATG	8 cut(s)	20, 352, 452, 470, 596, 622, 1035, 1055
NlaIV	GGNNCC	2 cut(s)	332, 616
NmeAIII	GCCGAG	1 cut(s)	718
NmuCI	GTSAC	2 cut(s)	497, 709
PagI	TCATGA	1 cut(s)	348
PctI	GAATGC	1 cut(s)	242
PdmI	GAANNNNTTC	2 cut(s)	82, 658
PfeI	GAWTC	1 cut(s)	286
PflMI	CCANNNNNTGG	1 cut(s)	454
PkrI	GCNGC	5 cut(s)	241, 445, 511, 789, 939
PleI	GAGTC	1 cut(s)	1005
PpsI	GAGTC	1 cut(s)	1005
PpuMI	RGGWCCY	1 cut(s)	331
Psp124BI	GAGCTC	1 cut(s)	896
Psp5II	RGGWCCY	1 cut(s)	331
Psp6I	CCWGG	2 cut(s)	226, 391
PspGI	CCWGG	2 cut(s)	226, 391
PspN4I	GGNNCC	2 cut(s)	332, 616
PspPI	GGNCC	2 cut(s)	331, 904
PspPPI	RGGWCCY	1 cut(s)	331
PstI	CTGCAG	1 cut(s)	942
PsuI	RGATCY	2 cut(s)	382, 949
PvuII	CAGCTG	2 cut(s)	571, 1072
RsaI	GTAC	4 cut(s)	258, 313, 616, 859
RsaNI	GTAC	4 cut(s)	257, 312, 615, 858
SacI	GAGCTC	1 cut(s)	896
SatI	GCNGC	5 cut(s)	240, 444, 510, 788, 938
Sau3AI	GATC	3 cut(s)	382, 949, 1054
Sau96I	GGNCC	2 cut(s)	331, 904
SchI	GAGTC	1 cut(s)	1006
ScrFI	CCNGG	2 cut(s)	228, 393
SduI	GDGCHC	1 cut(s)	896
SfcI	CTRYAG	2 cut(s)	726, 938
SinI	GGWCC	2 cut(s)	331, 904
SmlI	CTYRAG	2 cut(s)	376, 603
SmoI	CTYRAG	2 cut(s)	376, 603
Sse9I	AATT	8 cut(s)	57, 71, 96, 102, 115, 135, 192, 1004
SspI	AATATT	1 cut(s)	641
SspMI	CTAG	3 cut(s)	524, 563, 953
SstI	GAGCTC	1 cut(s)	896
StyD4I	CCNGG	2 cut(s)	226, 391
StyI	CCWWGG	3 cut(s)	448, 618, 1077
TaaI	ACNGT	6 cut(s)	53, 224, 297, 497, 862, 908
TaqI	TCGA	3 cut(s)	120, 576, 702
TasI	AATT	8 cut(s)	57, 71, 96, 102, 115, 135, 192, 1004
TatI	WGTACW	2 cut(s)	256, 311
TfiI	GAWTC	1 cut(s)	286
TscAI	CASTG	3 cut(s)	204, 655, 718
TseFI	GTSAC	2 cut(s)	497, 709
TseI	GCWGC	5 cut(s)	239, 443, 509, 787, 937
Tsp45I	GTSAC	2 cut(s)	497, 709
TspDTI	ATGAA	6 cut(s)	269, 309, 337, 365, 845, 858
TspGWI	ACGGA	1 cut(s)	333
TspRI	CASTG	3 cut(s)	204, 655, 718
Van91I	CCANNNNNTGG	1 cut(s)	454
VpaK11BI	GGWCC	2 cut(s)	331, 904
XapI	RAATTY	3 cut(s)	57, 96, 1004
XbaI	TCTAGA	1 cut(s)	523
XmnI	GAANNNNTTC	2 cut(s)	82, 658
XspI	CTAG	3 cut(s)	524, 563, 953

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.