Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002712

Physical Location & Seq

Genomic Coordinates Forward (+)

19234074 .. 19234780

Gene Structure 707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0213100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGATTTCTGGCGAAGCCGTACCAGATGGATTCCTACTCCAGAACAAATAAGAATCCTCAAGGATCTTTACTACTTCAAGGGATTTAAGTGCCCATCTACAGAGCACATTCACGAGATCTGCCTCCAGCTGAACCAGTATGGACATGTTGAGGGTAAGAACATTTACTTTTGGTTCCAGAACGTCAGGGCTCGAGAGAAGCAGATGAATAGGTGTAATCAGGCTGCTCCAGTGCCCATGGGAACTAGTTCTCTTGGTACTGGTGGATCCATCGATCTCAATTTTGGGTCCACTGGTTCTACTGGTGCTGGTGGATCCATCGACATCAATTTTGGGTCCACTAGTTCTACTGATGATGGAGGACAAACATCCCTACAACAACGAGAAGGAGATCACCAGGAGGTTCAAACTCTTCCTCTGTTCCCCGTGCACGGCGAGGACGTCTTTGGTAACCTGAAGACTACTTCCGAGGAAGGTAGCGCATTTGGTTACTATTCTGGTGGCTCAGGCGGTTACCACAGTGGCTCAAACGTTTCTCTTGAGCTCAGCCTCAACCCATCCGGAGCTGCTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

191

Amino Acids

20.83

Weight (kDa)

5.46

Isoelectric Point (pI)

40.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	7 - 68	6.1e-10	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63710 AT5G63710 AT5G63710 AT5G63710
fragaria_vesca	FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740
malus_domestica	MD15G1139900.v1.1
prunus_persica	Prupe.4G284100_v2.0.a1 Prupe.4G284400_v2.0.a1 Prupe.4G284400_v2.0.a1 Prupe.4G285600_v2.0.a1 Prupe.4G285600_v2.0.a1 Prupe.4G285600_v2.0.a1
pyrus_communis	pycom15g12640
rosa_chinensis	RchiOBHm_Chr3g0484651
rosa_laevigata	RLG00000023209
rosa_multiflora	Rmu_sc0005467.1_g000001 Rmu_sc0006192.1_g000001
rosa_roxburghii	Rroxscaffold_6G00397540
rosa_rugosa	Rorug03G0212900 Rorug03G0213000 Rorug03G0213100 Rorug03G0213200
rosa_samantha	Rh3AG263000 Rh3AG263200 Rh3BG298600 Rh3CG295700 Rh3CG295900 Rh3DG291900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	444
AccIII	TCCGGA	1 cut(s)	560
AciI	CCGC	1 cut(s)	510
AclI	AACGTT	1 cut(s)	531
AclWI	GGATC	5 cut(s)	72, 261, 274, 309, 322
AcuI	CTGAAG	1 cut(s)	476
AcyI	GRCGYC	1 cut(s)	441
AfaI	GTAC	2 cut(s)	22, 259
AfiI	CCNNNNNNNGG	1 cut(s)	431
AflIII	ACRYGT	1 cut(s)	145
AgsI	TTSAA	2 cut(s)	79, 407
AhlI	ACTAGT	2 cut(s)	245, 341
AjnI	CCWGG	1 cut(s)	396
AluBI	AGCT	3 cut(s)	130, 544, 566
AluI	AGCT	3 cut(s)	130, 544, 566
Alw21I	GWGCWC	3 cut(s)	108, 432, 546
Alw44I	GTGCAC	1 cut(s)	428
AlwI	GGATC	5 cut(s)	72, 261, 274, 309, 322
Ama87I	CYCGRG	1 cut(s)	192
Aor13HI	TCCGGA	1 cut(s)	560
ApaLI	GTGCAC	1 cut(s)	428
ApeKI	GCWGC	2 cut(s)	224, 566
ArsI	GACNNNNNNTTYG	2 cut(s)	314, 346
Asp700I	GAANNNNTTC	1 cut(s)	247
AspLEI	GCGC	1 cut(s)	482
AspS9I	GGNCC	2 cut(s)	288, 336
AsuHPI	GGTGA	1 cut(s)	386
AvaI	CYCGRG	1 cut(s)	192
AvaII	GGWCC	2 cut(s)	288, 336
BaeGI	GKGCMC	3 cut(s)	95, 237, 432
BamHI	GGATCC	2 cut(s)	266, 314
BanII	GRGCYC	2 cut(s)	193, 546
BauI	CACGAG	1 cut(s)	113
BbsI	GAAGAC	1 cut(s)	464
Bbv12I	GWGCWC	3 cut(s)	108, 432, 546
BbvI	GCAGC	2 cut(s)	211, 553
BccI	CCATC	6 cut(s)	21, 103, 278, 326, 350, 565
BceAI	ACGGC	2 cut(s)	3, 448
BciT130I	CCWGG	1 cut(s)	398
BcuI	ACTAGT	2 cut(s)	245, 341
BfaI	CTAG	3 cut(s)	246, 342, 574
BfmI	CTRYAG	1 cut(s)	99
BglII	AGATCT	1 cut(s)	117
BisI	GCNGC	2 cut(s)	225, 567
BlpI	GCTNAGC	1 cut(s)	545
BlsI	GCNGC	2 cut(s)	226, 568
Bme1390I	CCNGG	1 cut(s)	398
Bme18I	GGWCC	2 cut(s)	288, 336
BmeT110I	CYCGRG	1 cut(s)	192
BmgT120I	GGNCC	2 cut(s)	288, 336
BmiI	GGNNCC	5 cut(s)	176, 268, 289, 316, 337
BmrFI	CCNGG	1 cut(s)	398
BpiI	GAAGAC	1 cut(s)	464
BpmI	CTGGAG	3 cut(s)	24, 110, 213
Bpu10I	CCTNAGC	1 cut(s)	505
Bpu1102I	GCTNAGC	1 cut(s)	545
BpuEI	CTTGAG	2 cut(s)	44, 560
Bsa29I	ATCGAT	1 cut(s)	273
BsaHI	GRCGYC	1 cut(s)	441
BsaJI	CCNNGG	2 cut(s)	237, 468
BsaWI	WCCGGW	1 cut(s)	560
Bsc4I	CCNNNNNNNGG	1 cut(s)	431
Bse1I	ACTGG	5 cut(s)	136, 230, 265, 298, 307
BseAI	TCCGGA	1 cut(s)	560
BseBI	CCWGG	1 cut(s)	398
BseCI	ATCGAT	1 cut(s)	273
BseDI	CCNNGG	2 cut(s)	237, 468
BseGI	GGATG	2 cut(s)	368, 557
BseLI	CCNNNNNNNGG	1 cut(s)	431
BseMII	CTCAG	2 cut(s)	519, 559
BseNI	ACTGG	5 cut(s)	136, 230, 265, 298, 307
BseSI	GKGCMC	3 cut(s)	95, 237, 432
BseXI	GCAGC	2 cut(s)	211, 553
BshVI	ATCGAT	1 cut(s)	273
BsiHKAI	GWGCWC	3 cut(s)	108, 432, 546
BsiHKCI	CYCGRG	1 cut(s)	192
BsiSI	CCGG	1 cut(s)	561
BslI	CCNNNNNNNGG	1 cut(s)	431
BsoBI	CYCGRG	1 cut(s)	192
Bsp1286I	GDGCHC	6 cut(s)	95, 108, 193, 237, 432, 546
Bsp13I	TCCGGA	1 cut(s)	560
Bsp143I	GATC	6 cut(s)	64, 117, 266, 274, 314, 391
Bsp1720I	GCTNAGC	1 cut(s)	545
Bsp19I	CCATGG	1 cut(s)	237
BspACI	CCGC	1 cut(s)	510
BspCNI	CTCAG	2 cut(s)	518, 558
BspDI	ATCGAT	1 cut(s)	273
BspEI	TCCGGA	1 cut(s)	560
BspLI	GGNNCC	5 cut(s)	176, 268, 289, 316, 337
BspPI	GGATC	5 cut(s)	72, 261, 274, 309, 322
BsrI	ACTGG	5 cut(s)	136, 230, 265, 298, 307
BssECI	CCNNGG	2 cut(s)	237, 468
BssMI	GATC	6 cut(s)	64, 117, 266, 274, 314, 391
BssNI	GRCGYC	1 cut(s)	441
BssSI	CACGAG	1 cut(s)	113
BssT1I	CCWWGG	1 cut(s)	237
Bst2BI	CACGAG	1 cut(s)	113
Bst2UI	CCWGG	1 cut(s)	398
Bst4CI	ACNGT	1 cut(s)	521
Bst6I	CTCTTC	1 cut(s)	417
BstACI	GRCGYC	1 cut(s)	441
BstDEI	CTNAG	2 cut(s)	505, 545
BstDSI	CCRYGG	1 cut(s)	237
BstEII	GGTNACC	2 cut(s)	449, 512
BstF5I	GGATG	2 cut(s)	368, 557
BstHHI	GCGC	1 cut(s)	482
BstKTI	GATC	6 cut(s)	67, 120, 269, 277, 317, 394
BstMBI	GATC	6 cut(s)	64, 117, 266, 274, 314, 391
BstNI	CCWGG	1 cut(s)	398
BstNSI	RCATGY	1 cut(s)	149
BstPI	GGTNACC	2 cut(s)	449, 512
BstSCI	CCNGG	1 cut(s)	396
BstSFI	CTRYAG	1 cut(s)	99
BstSLI	GKGCMC	3 cut(s)	95, 237, 432
BstV1I	GCAGC	2 cut(s)	211, 553
BstV2I	GAAGAC	1 cut(s)	464
BstX2I	RGATCY	4 cut(s)	64, 117, 266, 314
BstYI	RGATCY	4 cut(s)	64, 117, 266, 314
Bsu15I	ATCGAT	1 cut(s)	273
BsuTUI	ATCGAT	1 cut(s)	273
BtgI	CCRYGG	1 cut(s)	237
BtsCI	GGATG	2 cut(s)	368, 557
BtsIMutI	CAGTG	3 cut(s)	237, 291, 526
CfoI	GCGC	1 cut(s)	482
Cfr13I	GGNCC	2 cut(s)	288, 336
ClaI	ATCGAT	1 cut(s)	273
Csp6I	GTAC	2 cut(s)	21, 258
CviAII	CATG	2 cut(s)	146, 238
CviJI	RGCY	9 cut(s)	18, 130, 191, 224, 504, 525, 544, 549, 566
CviKI_1	RGCY	9 cut(s)	18, 130, 191, 224, 504, 525, 544, 549, 566
CviQI	GTAC	2 cut(s)	21, 258
DdeI	CTNAG	2 cut(s)	505, 545
DpnI	GATC	6 cut(s)	66, 119, 268, 276, 316, 393
DpnII	GATC	6 cut(s)	64, 117, 266, 274, 314, 391
Eam1104I	CTCTTC	1 cut(s)	417
EarI	CTCTTC	1 cut(s)	417
Ecl136II	GAGCTC	1 cut(s)	544
Eco130I	CCWWGG	1 cut(s)	237
Eco24I	GRGCYC	2 cut(s)	193, 546
Eco47I	GGWCC	2 cut(s)	288, 336
Eco53kI	GAGCTC	1 cut(s)	544
Eco57I	CTGAAG	1 cut(s)	476
Eco88I	CYCGRG	1 cut(s)	192
Eco91I	GGTNACC	2 cut(s)	449, 512
EcoICRI	GAGCTC	1 cut(s)	544
EcoO65I	GGTNACC	2 cut(s)	449, 512
EcoRII	CCWGG	1 cut(s)	396
EcoT14I	CCWWGG	1 cut(s)	237
EcoT38I	GRGCYC	2 cut(s)	193, 546
ErhI	CCWWGG	1 cut(s)	237
FaeI	CATG	2 cut(s)	149, 241
FaiI	YATR	3 cut(s)	141, 147, 239
FatI	CATG	2 cut(s)	145, 237
Fnu4HI	GCNGC	2 cut(s)	225, 567
FokI	GGATG	2 cut(s)	355, 544
FriOI	GRGCYC	2 cut(s)	193, 546
Fsp4HI	GCNGC	2 cut(s)	225, 567
FspBI	CTAG	3 cut(s)	246, 342, 574
GlaI	GCGC	1 cut(s)	481
GluI	GCNGC	2 cut(s)	225, 567
GsuI	CTGGAG	3 cut(s)	24, 110, 213
HapII	CCGG	1 cut(s)	561
HhaI	GCGC	1 cut(s)	482
Hin1I	GRCGYC	1 cut(s)	441
Hin1II	CATG	2 cut(s)	149, 241
Hin6I	GCGC	1 cut(s)	480
HinP1I	GCGC	1 cut(s)	480
HinfI	GANTC	2 cut(s)	31, 54
HpaII	CCGG	1 cut(s)	561
HphI	GGTGA	1 cut(s)	386
Hpy166II	GTNNAC	3 cut(s)	291, 339, 430
Hpy188I	TCNGA	1 cut(s)	469
Hpy188III	TCNNGA	6 cut(s)	41, 113, 178, 194, 539, 561
Hpy8I	GTNNAC	3 cut(s)	291, 339, 430
HpyAV	CCTTC	2 cut(s)	380, 467
HpyCH4III	ACNGT	1 cut(s)	521
HpyCH4IV	ACGT	3 cut(s)	183, 441, 531
HpyCH4V	TGCA	1 cut(s)	430
HpyF3I	CTNAG	2 cut(s)	505, 545
HpySE526I	ACGT	3 cut(s)	183, 441, 531
Hsp92I	GRCGYC	1 cut(s)	441
Hsp92II	CATG	2 cut(s)	149, 241
HspAI	GCGC	1 cut(s)	480
Kpn2I	TCCGGA	1 cut(s)	560
Kzo9I	GATC	6 cut(s)	64, 117, 266, 274, 314, 391
LmnI	GCTCC	2 cut(s)	232, 563
Lsp1109I	GCAGC	2 cut(s)	211, 553
MaeI	CTAG	3 cut(s)	246, 342, 574
MaeII	ACGT	3 cut(s)	183, 441, 531
MaeIII	GTNAC	3 cut(s)	449, 488, 512
MalI	GATC	6 cut(s)	66, 119, 268, 276, 316, 393
MboI	GATC	6 cut(s)	64, 117, 266, 274, 314, 391
MboII	GAAGA	2 cut(s)	404, 469
MflI	RGATCY	4 cut(s)	64, 117, 266, 314
MhlI	GDGCHC	6 cut(s)	95, 108, 193, 237, 432, 546
MluCI	AATT	2 cut(s)	280, 328
MnlI	CCTC	9 cut(s)	68, 134, 145, 353, 394, 426, 430, 463, 560
MroI	TCCGGA	1 cut(s)	560
MroXI	GAANNNNTTC	1 cut(s)	247
MseI	TTAA	1 cut(s)	87
MspA1I	CMGCKG	1 cut(s)	130
MspI	CCGG	1 cut(s)	561
MspR9I	CCNGG	1 cut(s)	398
MvaI	CCWGG	1 cut(s)	398
NcoI	CCATGG	1 cut(s)	237
NdeII	GATC	6 cut(s)	64, 117, 266, 274, 314, 391
NlaIII	CATG	2 cut(s)	149, 241
NlaIV	GGNNCC	5 cut(s)	176, 268, 289, 316, 337
NspI	RCATGY	1 cut(s)	149
PaeR7I	CTCGAG	1 cut(s)	192
PciI	ACATGT	1 cut(s)	145
PcsI	WCGNNNNNNNCGW	1 cut(s)	438
PdmI	GAANNNNTTC	1 cut(s)	247
PfeI	GAWTC	2 cut(s)	31, 54
PkrI	GCNGC	2 cut(s)	226, 568
PscI	ACATGT	1 cut(s)	145
Psp124BI	GAGCTC	1 cut(s)	546
Psp1406I	AACGTT	1 cut(s)	531
Psp6I	CCWGG	1 cut(s)	396
PspEI	GGTNACC	2 cut(s)	449, 512
PspGI	CCWGG	1 cut(s)	396
PspN4I	GGNNCC	5 cut(s)	176, 268, 289, 316, 337
PspPI	GGNCC	2 cut(s)	288, 336
PsuI	RGATCY	4 cut(s)	64, 117, 266, 314
PvuII	CAGCTG	1 cut(s)	130
RsaI	GTAC	2 cut(s)	22, 259
RsaNI	GTAC	2 cut(s)	21, 258
SacI	GAGCTC	1 cut(s)	546
SaqAI	TTAA	1 cut(s)	87
SatI	GCNGC	2 cut(s)	225, 567
Sau3AI	GATC	6 cut(s)	64, 117, 266, 274, 314, 391
Sau96I	GGNCC	2 cut(s)	288, 336
ScrFI	CCNGG	1 cut(s)	398
SduI	GDGCHC	6 cut(s)	95, 108, 193, 237, 432, 546
SfcI	CTRYAG	1 cut(s)	99
Sfr274I	CTCGAG	1 cut(s)	192
SinI	GGWCC	2 cut(s)	288, 336
SlaI	CTCGAG	1 cut(s)	192
SmlI	CTYRAG	3 cut(s)	59, 192, 539
SmoI	CTYRAG	3 cut(s)	59, 192, 539
SpeI	ACTAGT	2 cut(s)	245, 341
Sse9I	AATT	2 cut(s)	280, 328
SsiI	CCGC	1 cut(s)	510
SspMI	CTAG	3 cut(s)	246, 342, 574
SstI	GAGCTC	1 cut(s)	546
StyD4I	CCNGG	1 cut(s)	396
StyI	CCWWGG	1 cut(s)	237
TaaI	ACNGT	1 cut(s)	521
TaiI	ACGT	3 cut(s)	186, 444, 534
TaqI	TCGA	3 cut(s)	193, 273, 321
TasI	AATT	2 cut(s)	280, 328
TfiI	GAWTC	2 cut(s)	31, 54
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TscAI	CASTG	3 cut(s)	237, 298, 526
TseI	GCWGC	2 cut(s)	224, 566
TspDTI	ATGAA	1 cut(s)	221
TspRI	CASTG	3 cut(s)	237, 298, 526
VneI	GTGCAC	1 cut(s)	428
VpaK11BI	GGWCC	2 cut(s)	288, 336
XceI	RCATGY	1 cut(s)	149
XhoI	CTCGAG	1 cut(s)	192
XmnI	GAANNNNTTC	1 cut(s)	247
XspI	CTAG	3 cut(s)	246, 342, 574
ZraI	GACGTC	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.