Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0002712

Physical Location & Seq

Genomic Coordinates Reverse (-)

29297285 .. 29298038

Gene Structure 754 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG263000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGCGCTCCCTTATCAAGAAGCTGCTTAGAGAAAATAGATTTGATGACATTGTGGATGGAAATATGAAGACCTATGATGAAAAAGAAGTCGGTGCTGTCATTCAGGTTGCATTGCTCTGCACCCAGAGCTCACCTGAGGACCGTCCAACAATGGCTGAAGTGGTTAGATTGCTGCAGGGAGTGGATCTAGCAGAGAGATGGGCTGAGTGTGAGCAACTTGAAGATGTAAGGAGTCGTGAATTCTCACTCCTGTCGCACCAGTTTGCATGGGCTGAGGAGACTACACATGATCAAGTAGCTATACTACACATGATCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

106

Amino Acids

12.27

Weight (kDa)

4.89

Isoelectric Point (pI)

50.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63710 AT5G63710 AT5G63710 AT5G63710
fragaria_vesca	FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740
malus_domestica	MD15G1139900.v1.1
prunus_persica	Prupe.4G284100_v2.0.a1 Prupe.4G284400_v2.0.a1 Prupe.4G284400_v2.0.a1 Prupe.4G285600_v2.0.a1 Prupe.4G285600_v2.0.a1 Prupe.4G285600_v2.0.a1
pyrus_communis	pycom15g12640
rosa_chinensis	RchiOBHm_Chr3g0484651
rosa_laevigata	RLG00000023209
rosa_multiflora	Rmu_sc0005467.1_g000001 Rmu_sc0006192.1_g000001
rosa_roxburghii	Rroxscaffold_6G00397540
rosa_rugosa	Rorug03G0212900 Rorug03G0213000 Rorug03G0213100 Rorug03G0213200
rosa_samantha	Rh3AG263000 Rh3AG263200 Rh3BG298600 Rh3CG295700 Rh3CG295900 Rh3DG291900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	192
AcsI	RAATTY	1 cut(s)	239
AcuI	CTGAAG	1 cut(s)	177
AgsI	TTSAA	1 cut(s)	221
AluBI	AGCT	3 cut(s)	22, 129, 299
AluI	AGCT	3 cut(s)	22, 129, 299
Alw21I	GWGCWC	1 cut(s)	131
Alw26I	GTCTC	1 cut(s)	272
AlwI	GGATC	1 cut(s)	192
ApeKI	GCWGC	2 cut(s)	22, 172
ApoI	RAATTY	1 cut(s)	239
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	1 cut(s)	139
AsuHPI	GGTGA	1 cut(s)	123
AvaII	GGWCC	1 cut(s)	139
AxyI	CCTNAGG	1 cut(s)	135
BanII	GRGCYC	1 cut(s)	131
BbsI	GAAGAC	1 cut(s)	74
Bbv12I	GWGCWC	1 cut(s)	131
BbvCI	CCTCAGC	1 cut(s)	273
BbvI	GCAGC	2 cut(s)	9, 159
BccI	CCATC	2 cut(s)	50, 192
BclI	TGATCA	2 cut(s)	289, 312
BcoDI	GTCTC	1 cut(s)	272
BfaI	CTAG	1 cut(s)	188
BfmI	CTRYAG	1 cut(s)	173
BisI	GCNGC	2 cut(s)	23, 173
BlsI	GCNGC	2 cut(s)	24, 174
Bme18I	GGWCC	1 cut(s)	139
BmgT120I	GGNCC	1 cut(s)	139
BpiI	GAAGAC	1 cut(s)	74
Bpu10I	CCTNAGC	1 cut(s)	273
Bse1I	ACTGG	1 cut(s)	259
Bse21I	CCTNAGG	1 cut(s)	135
Bse3DI	GCAATG	1 cut(s)	110
BseGI	GGATG	1 cut(s)	61
BseMI	GCAATG	1 cut(s)	110
BseMII	CTCAG	3 cut(s)	126, 195, 264
BseNI	ACTGG	1 cut(s)	259
BseRI	GAGGAG	1 cut(s)	290
BseXI	GCAGC	2 cut(s)	9, 159
BsgI	GTGCAG	1 cut(s)	103
BsiHKAI	GWGCWC	1 cut(s)	131
BsmAI	GTCTC	1 cut(s)	272
Bsp1286I	GDGCHC	1 cut(s)	131
Bsp143I	GATC	3 cut(s)	184, 289, 312
BspCNI	CTCAG	3 cut(s)	127, 196, 265
BspMAI	CTGCAG	1 cut(s)	177
BspPI	GGATC	1 cut(s)	192
BsrDI	GCAATG	1 cut(s)	110
BsrI	ACTGG	1 cut(s)	259
BssMI	GATC	3 cut(s)	184, 289, 312
Bst4CI	ACNGT	1 cut(s)	143
BstDEI	CTNAG	4 cut(s)	26, 135, 204, 273
BstF5I	GGATG	1 cut(s)	61
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	3 cut(s)	187, 292, 315
BstMAI	GTCTC	1 cut(s)	272
BstMBI	GATC	3 cut(s)	184, 289, 312
BstMWI	GCNNNNNNNGC	1 cut(s)	126
BstSFI	CTRYAG	1 cut(s)	173
BstV1I	GCAGC	2 cut(s)	9, 159
BstV2I	GAAGAC	1 cut(s)	74
BstX2I	RGATCY	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	184
Bsu36I	CCTNAGG	1 cut(s)	135
BtsCI	GGATG	1 cut(s)	61
CfoI	GCGC	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	139
CviAII	CATG	3 cut(s)	267, 287, 310
CviJI	RGCY	6 cut(s)	22, 129, 155, 203, 272, 299
CviKI_1	RGCY	6 cut(s)	22, 129, 155, 203, 272, 299
DdeI	CTNAG	4 cut(s)	26, 135, 204, 273
DpnI	GATC	3 cut(s)	186, 291, 314
DpnII	GATC	3 cut(s)	184, 289, 312
Ecl136II	GAGCTC	1 cut(s)	129
Eco24I	GRGCYC	1 cut(s)	131
Eco47I	GGWCC	1 cut(s)	139
Eco53kI	GAGCTC	1 cut(s)	129
Eco57I	CTGAAG	1 cut(s)	177
Eco81I	CCTNAGG	1 cut(s)	135
EcoICRI	GAGCTC	1 cut(s)	129
EcoRI	GAATTC	1 cut(s)	239
EcoT38I	GRGCYC	1 cut(s)	131
FaeI	CATG	3 cut(s)	270, 290, 313
FaiI	YATR	6 cut(s)	65, 75, 268, 288, 302, 311
FatI	CATG	3 cut(s)	266, 286, 309
FbaI	TGATCA	2 cut(s)	289, 312
Fnu4HI	GCNGC	2 cut(s)	23, 173
FokI	GGATG	1 cut(s)	68
FriOI	GRGCYC	1 cut(s)	131
Fsp4HI	GCNGC	2 cut(s)	23, 173
FspBI	CTAG	1 cut(s)	188
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	2 cut(s)	23, 173
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	3 cut(s)	270, 290, 313
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HinfI	GANTC	1 cut(s)	232
HphI	GGTGA	1 cut(s)	123
Hpy188III	TCNNGA	2 cut(s)	16, 236
HpyCH4III	ACNGT	1 cut(s)	143
HpyCH4V	TGCA	4 cut(s)	110, 120, 175, 266
HpyF10VI	GCNNNNNNNGC	1 cut(s)	126
HpyF3I	CTNAG	4 cut(s)	26, 135, 204, 273
Hsp92II	CATG	3 cut(s)	270, 290, 313
HspAI	GCGC	1 cut(s)	4
Ksp22I	TGATCA	2 cut(s)	289, 312
Kzo9I	GATC	3 cut(s)	184, 289, 312
LmnI	GCTCC	1 cut(s)	11
LpnPI	CCDG	6 cut(s)	89, 137, 147, 161, 263, 272
Lsp1109I	GCAGC	2 cut(s)	9, 159
MaeI	CTAG	1 cut(s)	188
MalI	GATC	3 cut(s)	186, 291, 314
MboI	GATC	3 cut(s)	184, 289, 312
MboII	GAAGA	2 cut(s)	79, 233
MflI	RGATCY	1 cut(s)	184
MhlI	GDGCHC	1 cut(s)	131
MluCI	AATT	1 cut(s)	239
MlyI	GAGTC	1 cut(s)	241
MmeI	TCCRAC	1 cut(s)	170
MnlI	CCTC	2 cut(s)	130, 268
MwoI	GCNNNNNNNGC	1 cut(s)	126
NdeII	GATC	3 cut(s)	184, 289, 312
NlaIII	CATG	3 cut(s)	270, 290, 313
PkrI	GCNGC	2 cut(s)	24, 174
PleI	GAGTC	1 cut(s)	240
PpsI	GAGTC	1 cut(s)	240
Psp124BI	GAGCTC	1 cut(s)	131
PspPI	GGNCC	1 cut(s)	139
PstI	CTGCAG	1 cut(s)	177
PsuI	RGATCY	1 cut(s)	184
SacI	GAGCTC	1 cut(s)	131
SatI	GCNGC	2 cut(s)	23, 173
Sau3AI	GATC	3 cut(s)	184, 289, 312
Sau96I	GGNCC	1 cut(s)	139
SchI	GAGTC	1 cut(s)	241
SduI	GDGCHC	1 cut(s)	131
SetI	ASST	6 cut(s)	24, 74, 108, 131, 136, 301
SfcI	CTRYAG	1 cut(s)	173
SinI	GGWCC	1 cut(s)	139
Sse9I	AATT	1 cut(s)	239
SspMI	CTAG	1 cut(s)	188
SstI	GAGCTC	1 cut(s)	131
TaaI	ACNGT	1 cut(s)	143
TasI	AATT	1 cut(s)	239
TseI	GCWGC	2 cut(s)	22, 172
TspDTI	ATGAA	2 cut(s)	80, 93
VpaK11BI	GGWCC	1 cut(s)	139
XapI	RAATTY	1 cut(s)	239
XspI	CTAG	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.