Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002712

Physical Location & Seq

Genomic Coordinates Reverse (-)

19243422 .. 19244982

Gene Structure 1561 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0213200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGCTACTATCCAAGACGACAAGACAGTCACTGGCTATCCGGTTCAGCCGGGTCAAGTCCCTACCGGTTACCGATCCGCTCCGCCCTATCCCTTCCCACCACCACCACCACCACCGGAGTTCCACTACAACCCCCAGCCCGCTGGGCCCAATAAGCCCACCTCCTTCGTCCGCGTCCTGATGGGATTCTTCGCCGTATCTGCAGTCATTATCTTAATAACCTTCTTGAATTGGCTGGTGATGCACCCTAAACTCCCGGAGTTCAAGGTCGAATCGGCCACCGTGTCCCTACTCAACGTGACTCGCTCCGAGTTAACGGCCACGTGGGACATCAGCCTCCTCTCCACCAACCCCAACAAGAAACTCAGAATCAACTACGACCACGTCGAGGCCTCGATTGTCTACGGCGACCACAACCACATCAGGCTCGGGAGAACGCCGTTGCGTCCCTTCGTTGTGAACCATAGGAACCAGACACGTATAGACATGAAACTCGGAGCGGTGAGTGAATGGGTCGGCAATGACGTGGCGAATGAAATCTCCGACGACAGGTCTCGGGGATTGGTGACTTTTGGAGTCAGGCTGATGGCTTCTGTGAGGTTTAAGTGTGGACTATGGCTGTCGAAATCCCGTTTGTTGCTGGTCACCTGCGATAGGGTCGATTTAGGGTTTTCTCCGAATAATGGGACCGGCTCGTTGACGGGTCAGTCGAGGGAGTGCCGGGTTCACTTCTATTCATTGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

248

Amino Acids

27.75

Weight (kDa)

9.48

Isoelectric Point (pI)

46.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63710 AT5G63710 AT5G63710 AT5G63710
fragaria_vesca	FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740
malus_domestica	MD15G1139900.v1.1
prunus_persica	Prupe.4G284100_v2.0.a1 Prupe.4G284400_v2.0.a1 Prupe.4G284400_v2.0.a1 Prupe.4G285600_v2.0.a1 Prupe.4G285600_v2.0.a1 Prupe.4G285600_v2.0.a1
pyrus_communis	pycom15g12640
rosa_chinensis	RchiOBHm_Chr3g0484651
rosa_laevigata	RLG00000023209
rosa_multiflora	Rmu_sc0005467.1_g000001 Rmu_sc0006192.1_g000001
rosa_roxburghii	Rroxscaffold_6G00397540
rosa_rugosa	Rorug03G0212900 Rorug03G0213000 Rorug03G0213100 Rorug03G0213200
rosa_samantha	Rh3AG263000 Rh3AG263200 Rh3BG298600 Rh3CG295700 Rh3CG295900 Rh3DG291900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	656
AasI	GACNNNNNNGTC	2 cut(s)	26, 706
Acc36I	ACCTGC	1 cut(s)	656
AccBSI	CCGCTC	2 cut(s)	80, 500
AccI	GTMKAC	1 cut(s)	402
AccII	CGCG	1 cut(s)	174
AciI	CCGC	5 cut(s)	78, 83, 141, 172, 500
AclWI	GGATC	1 cut(s)	69
AcoI	YGGCCR	2 cut(s)	276, 318
AcvI	CACGTG	1 cut(s)	324
AfiI	CCNNNNNNNGG	4 cut(s)	388, 549, 654, 683
AflIII	ACRYGT	1 cut(s)	476
AgeI	ACCGGT	1 cut(s)	65
AgsI	TTSAA	2 cut(s)	229, 265
AhdI	GACNNNNNGTC	1 cut(s)	550
AjiI	CACGTC	2 cut(s)	385, 526
Alw26I	GTCTC	1 cut(s)	558
AlwI	GGATC	1 cut(s)	69
AlwNI	CAGNNNCTG	1 cut(s)	32
Ama87I	CYCGRG	2 cut(s)	428, 555
AoxI	GGCC	4 cut(s)	146, 276, 318, 390
ApaI	GGGCCC	1 cut(s)	150
AsiGI	ACCGGT	1 cut(s)	65
AspS9I	GGNCC	3 cut(s)	146, 147, 687
AsuC2I	CCSGG	3 cut(s)	51, 257, 722
AsuHPI	GGTGA	4 cut(s)	250, 514, 577, 637
AvaI	CYCGRG	2 cut(s)	428, 555
AvaII	GGWCC	1 cut(s)	687
BaeGI	GKGCMC	1 cut(s)	150
BanII	GRGCYC	1 cut(s)	150
BbrPI	CACGTG	1 cut(s)	324
BccI	CCATC	2 cut(s)	175, 580
BceAI	ACGGC	4 cut(s)	179, 333, 421, 424
BcnI	CCSGG	3 cut(s)	51, 257, 722
BcoDI	GTCTC	1 cut(s)	558
BfmI	CTRYAG	1 cut(s)	201
BfuAI	ACCTGC	1 cut(s)	656
BglI	GCCNNNNNGGC	1 cut(s)	145
Bme1390I	CCNGG	3 cut(s)	51, 257, 722
Bme18I	GGWCC	1 cut(s)	687
BmeRI	GACNNNNNGTC	1 cut(s)	550
BmeT110I	CYCGRG	2 cut(s)	428, 555
BmgBI	CACGTC	2 cut(s)	385, 526
BmgT120I	GGNCC	3 cut(s)	146, 147, 687
BmiI	GGNNCC	3 cut(s)	148, 470, 688
BmrFI	CCNGG	3 cut(s)	51, 257, 722
BmsI	GCATC	1 cut(s)	231
BpuMI	CCSGG	3 cut(s)	51, 257, 722
BsaAI	YACGTR	2 cut(s)	324, 479
BsaI	GGTCTC	1 cut(s)	558
BsaWI	WCCGGW	3 cut(s)	40, 65, 115
Bsc4I	CCNNNNNNNGG	4 cut(s)	388, 549, 654, 683
Bse118I	RCCGGY	2 cut(s)	65, 689
Bse1I	ACTGG	1 cut(s)	37
Bse3DI	GCAATG	1 cut(s)	526
BseLI	CCNNNNNNNGG	4 cut(s)	388, 549, 654, 683
BseMI	GCAATG	1 cut(s)	526
BseMII	CTCAG	1 cut(s)	379
BseNI	ACTGG	1 cut(s)	37
BseRI	GAGGAG	1 cut(s)	329
BseSI	GKGCMC	1 cut(s)	150
BseYI	CCCAGC	2 cut(s)	135, 143
Bsh1236I	CGCG	1 cut(s)	174
BshFI	GGCC	4 cut(s)	148, 278, 320, 392
BshTI	ACCGGT	1 cut(s)	65
BsiHKCI	CYCGRG	2 cut(s)	428, 555
BsiSI	CCGG	7 cut(s)	41, 50, 66, 116, 257, 690, 721
BslFI	GGGAC	5 cut(s)	44, 271, 341, 432, 700
BslI	CCNNNNNNNGG	4 cut(s)	388, 549, 654, 683
BsmAI	GTCTC	1 cut(s)	558
BsmFI	GGGAC	5 cut(s)	44, 271, 341, 432, 700
BsnI	GGCC	4 cut(s)	148, 278, 320, 392
Bso31I	GGTCTC	1 cut(s)	558
BsoBI	CYCGRG	2 cut(s)	428, 555
Bsp120I	GGGCCC	1 cut(s)	146
Bsp1286I	GDGCHC	1 cut(s)	150
Bsp143I	GATC	1 cut(s)	74
BspACI	CCGC	5 cut(s)	78, 83, 141, 172, 500
BspANI	GGCC	4 cut(s)	148, 278, 320, 392
BspCNI	CTCAG	1 cut(s)	378
BspFNI	CGCG	1 cut(s)	174
BspLI	GGNNCC	3 cut(s)	148, 470, 688
BspMAI	CTGCAG	1 cut(s)	205
BspMI	ACCTGC	1 cut(s)	656
BspPI	GGATC	1 cut(s)	69
BspTNI	GGTCTC	1 cut(s)	558
BsrBI	CCGCTC	2 cut(s)	80, 500
BsrDI	GCAATG	1 cut(s)	526
BsrFI	RCCGGY	2 cut(s)	65, 689
BsrI	ACTGG	1 cut(s)	37
BssAI	RCCGGY	2 cut(s)	65, 689
BssMI	GATC	1 cut(s)	74
Bst4CI	ACNGT	2 cut(s)	28, 283
BstBAI	YACGTR	2 cut(s)	324, 479
BstC8I	GCNNGC	1 cut(s)	141
BstDEI	CTNAG	1 cut(s)	365
BstEII	GGTNACC	2 cut(s)	68, 643
BstENI	CCTNNNNNAGG	1 cut(s)	652
BstFNI	CGCG	1 cut(s)	174
BstKTI	GATC	1 cut(s)	77
BstMAI	GTCTC	1 cut(s)	558
BstMBI	GATC	1 cut(s)	74
BstMWI	GCNNNNNNNGC	4 cut(s)	145, 154, 200, 241
BstPI	GGTNACC	2 cut(s)	68, 643
BstSCI	CCNGG	3 cut(s)	49, 255, 720
BstSFI	CTRYAG	1 cut(s)	201
BstSLI	GKGCMC	1 cut(s)	150
BstUI	CGCG	1 cut(s)	174
BstXI	CCANNNNNNTGG	1 cut(s)	143
BsuRI	GGCC	4 cut(s)	148, 278, 320, 392
BtrI	CACGTC	2 cut(s)	385, 526
BtsIMutI	CAGTG	1 cut(s)	30
BveI	ACCTGC	1 cut(s)	656
Cac8I	GCNNGC	1 cut(s)	141
CaiI	CAGNNNCTG	1 cut(s)	32
Cfr10I	RCCGGY	2 cut(s)	65, 689
Cfr13I	GGNCC	3 cut(s)	146, 147, 687
CseI	GACGC	2 cut(s)	163, 434
CspAI	ACCGGT	1 cut(s)	65
CviAII	CATG	1 cut(s)	487
DdeI	CTNAG	1 cut(s)	365
DpnI	GATC	1 cut(s)	76
DpnII	GATC	1 cut(s)	74
DrdI	GACNNNNNNGTC	2 cut(s)	26, 706
DriI	GACNNNNNGTC	1 cut(s)	550
DseDI	GACNNNNNNGTC	2 cut(s)	26, 706
EaeI	YGGCCR	2 cut(s)	276, 318
Eam1105I	GACNNNNNGTC	1 cut(s)	550
EciI	GGCGGA	1 cut(s)	72
Eco147I	AGGCCT	1 cut(s)	392
Eco24I	GRGCYC	1 cut(s)	150
Eco31I	GGTCTC	1 cut(s)	558
Eco47I	GGWCC	1 cut(s)	687
Eco72I	CACGTG	1 cut(s)	324
Eco88I	CYCGRG	2 cut(s)	428, 555
Eco91I	GGTNACC	2 cut(s)	68, 643
EcoNI	CCTNNNNNAGG	1 cut(s)	652
EcoO65I	GGTNACC	2 cut(s)	68, 643
EcoT38I	GRGCYC	1 cut(s)	150
FaeI	CATG	1 cut(s)	490
FaiI	YATR	4 cut(s)	465, 482, 488, 616
FaqI	GGGAC	5 cut(s)	44, 271, 341, 432, 700
FatI	CATG	1 cut(s)	486
FauI	CCCGC	1 cut(s)	148
FblI	GTMKAC	1 cut(s)	402
FriOI	GRGCYC	1 cut(s)	150
GsaI	CCCAGC	2 cut(s)	139, 147
HaeIII	GGCC	4 cut(s)	148, 278, 320, 392
HapII	CCGG	7 cut(s)	41, 50, 66, 116, 257, 690, 721
HgaI	GACGC	2 cut(s)	163, 434
Hin1II	CATG	1 cut(s)	490
HincII	GTYRAC	2 cut(s)	315, 699
HindII	GTYRAC	2 cut(s)	315, 699
HinfI	GANTC	5 cut(s)	186, 272, 301, 369, 576
HpaI	GTTAAC	1 cut(s)	315
HpaII	CCGG	7 cut(s)	41, 50, 66, 116, 257, 690, 721
HphI	GGTGA	4 cut(s)	250, 514, 577, 637
Hpy166II	GTNNAC	6 cut(s)	315, 403, 460, 611, 699, 727
Hpy188I	TCNGA	5 cut(s)	310, 368, 497, 544, 678
Hpy188III	TCNNGA	3 cut(s)	178, 226, 430
Hpy8I	GTNNAC	6 cut(s)	315, 403, 460, 611, 699, 727
Hpy99I	CGWCG	2 cut(s)	389, 548
HpyAV	CCTTC	4 cut(s)	103, 175, 232, 460
HpyCH4III	ACNGT	2 cut(s)	28, 283
HpyCH4IV	ACGT	5 cut(s)	297, 323, 384, 478, 525
HpyCH4V	TGCA	2 cut(s)	203, 244
HpyF10VI	GCNNNNNNNGC	4 cut(s)	145, 154, 200, 241
HpyF3I	CTNAG	1 cut(s)	365
HpySE526I	ACGT	5 cut(s)	297, 323, 384, 478, 525
Hsp92II	CATG	1 cut(s)	490
KspAI	GTTAAC	1 cut(s)	315
Kzo9I	GATC	1 cut(s)	74
LmnI	GCTCC	3 cut(s)	85, 311, 497
LweI	GCATC	1 cut(s)	231
MaeII	ACGT	5 cut(s)	297, 323, 384, 478, 525
MaeIII	GTNAC	5 cut(s)	28, 68, 298, 565, 643
MalI	GATC	1 cut(s)	76
MbiI	CCGCTC	2 cut(s)	80, 500
MboI	GATC	1 cut(s)	74
MboII	GAAGA	1 cut(s)	181
MhlI	GDGCHC	1 cut(s)	150
MluCI	AATT	1 cut(s)	229
MlyI	GAGTC	2 cut(s)	295, 585
MmeI	TCCRAC	1 cut(s)	567
MnlI	CCTC	7 cut(s)	172, 347, 350, 382, 403, 591, 705
MseI	TTAA	3 cut(s)	215, 314, 603
MspA1I	CMGCKG	1 cut(s)	143
MspI	CCGG	7 cut(s)	41, 50, 66, 116, 257, 690, 721
MspR9I	CCNGG	3 cut(s)	51, 257, 722
MvnI	CGCG	1 cut(s)	174
MwoI	GCNNNNNNNGC	4 cut(s)	145, 154, 200, 241
NciI	CCSGG	3 cut(s)	51, 257, 722
NdeII	GATC	1 cut(s)	74
NlaIII	CATG	1 cut(s)	490
NlaIV	GGNNCC	3 cut(s)	148, 470, 688
NmuCI	GTSAC	4 cut(s)	28, 298, 565, 643
PaqCI	CACCTGC	1 cut(s)	656
PceI	AGGCCT	1 cut(s)	392
PcsI	WCGNNNNNNNCGW	3 cut(s)	384, 522, 707
PfeI	GAWTC	3 cut(s)	186, 272, 369
PflFI	GACNNNGTC	1 cut(s)	383
PfoI	TCCNGGA	1 cut(s)	255
PinAI	ACCGGT	1 cut(s)	65
PleI	GAGTC	2 cut(s)	295, 584
PmaCI	CACGTG	1 cut(s)	324
PmlI	CACGTG	1 cut(s)	324
PpsI	GAGTC	2 cut(s)	295, 584
Ppu21I	YACGTR	2 cut(s)	324, 479
PspCI	CACGTG	1 cut(s)	324
PspEI	GGTNACC	2 cut(s)	68, 643
PspFI	CCCAGC	2 cut(s)	135, 143
PspN4I	GGNNCC	3 cut(s)	148, 470, 688
PspOMI	GGGCCC	1 cut(s)	146
PspPI	GGNCC	3 cut(s)	146, 147, 687
PstI	CTGCAG	1 cut(s)	205
PstNI	CAGNNNCTG	1 cut(s)	32
PsyI	GACNNNGTC	1 cut(s)	383
SaqAI	TTAA	3 cut(s)	215, 314, 603
Sau3AI	GATC	1 cut(s)	74
Sau96I	GGNCC	3 cut(s)	146, 147, 687
SchI	GAGTC	2 cut(s)	295, 585
ScrFI	CCNGG	3 cut(s)	51, 257, 722
SduI	GDGCHC	1 cut(s)	150
SfaNI	GCATC	1 cut(s)	231
SfcI	CTRYAG	1 cut(s)	201
SinI	GGWCC	1 cut(s)	687
Sse9I	AATT	1 cut(s)	229
SseBI	AGGCCT	1 cut(s)	392
SsiI	CCGC	5 cut(s)	78, 83, 141, 172, 500
StuI	AGGCCT	1 cut(s)	392
StyD4I	CCNGG	3 cut(s)	49, 255, 720
TaaI	ACNGT	2 cut(s)	28, 283
TaiI	ACGT	5 cut(s)	300, 326, 387, 481, 528
TaqI	TCGA	6 cut(s)	270, 387, 395, 623, 660, 710
TasI	AATT	1 cut(s)	229
TfiI	GAWTC	3 cut(s)	186, 272, 369
Tru1I	TTAA	3 cut(s)	215, 314, 603
Tru9I	TTAA	3 cut(s)	215, 314, 603
TscAI	CASTG	1 cut(s)	37
TseFI	GTSAC	4 cut(s)	28, 298, 565, 643
Tsp45I	GTSAC	4 cut(s)	28, 298, 565, 643
TspDTI	ATGAA	3 cut(s)	503, 549, 726
TspRI	CASTG	1 cut(s)	37
Tth111I	GACNNNGTC	1 cut(s)	383
VpaK11BI	GGWCC	1 cut(s)	687
XagI	CCTNNNNNAGG	1 cut(s)	652
XmiI	GTMKAC	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.