Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0002712

Physical Location & Seq

Genomic Coordinates Reverse (-)

30248691 .. 30262780

Gene Structure 14090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG295700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGCATAACATCAAGAAGCTGCTTAGAGAAAATAGACTTGATGACATTGTGGATGGAAATATGAAGACCTATGATGAAAAAGAAGTTGGTACTGTCATTCAGGTTGCATTGCTCTGCACCCAGAGCTTACCTGAGGACCGTCCAACAATGGCAGAAGTGGTTAGATTGCTGCAGGGAGTGGATCTAGCAGAGAGATGGGCTGAGTGGGAGCAACTTGAAGATGTAAGGAGTCGTGAATTCTCACTCCTGTCGCACCAGTTTGCATGGGCTGAGGAGACTACACATGATCAAGTAGCTATACAGTTGTCCAAGGCAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

106

Amino Acids

12.33

Weight (kDa)

4.89

Isoelectric Point (pI)

46.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63710 AT5G63710 AT5G63710 AT5G63710
fragaria_vesca	FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740
malus_domestica	MD15G1139900.v1.1
prunus_persica	Prupe.4G284100_v2.0.a1 Prupe.4G284400_v2.0.a1 Prupe.4G284400_v2.0.a1 Prupe.4G285600_v2.0.a1 Prupe.4G285600_v2.0.a1 Prupe.4G285600_v2.0.a1
pyrus_communis	pycom15g12640
rosa_chinensis	RchiOBHm_Chr3g0484651
rosa_laevigata	RLG00000023209
rosa_multiflora	Rmu_sc0005467.1_g000001 Rmu_sc0006192.1_g000001
rosa_roxburghii	Rroxscaffold_6G00397540
rosa_rugosa	Rorug03G0212900 Rorug03G0213000 Rorug03G0213100 Rorug03G0213200
rosa_samantha	Rh3AG263000 Rh3AG263200 Rh3BG298600 Rh3CG295700 Rh3CG295900 Rh3DG291900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	189
AcsI	RAATTY	1 cut(s)	236
AfaI	GTAC	1 cut(s)	91
AgsI	TTSAA	1 cut(s)	218
AjuI	GAANNNNNNNTTGG	2 cut(s)	69, 101
AluBI	AGCT	3 cut(s)	19, 126, 296
AluI	AGCT	3 cut(s)	19, 126, 296
Alw26I	GTCTC	1 cut(s)	269
AlwI	GGATC	1 cut(s)	189
ApeKI	GCWGC	2 cut(s)	19, 169
ApoI	RAATTY	1 cut(s)	236
AspS9I	GGNCC	1 cut(s)	136
AvaII	GGWCC	1 cut(s)	136
AxyI	CCTNAGG	1 cut(s)	132
BbsI	GAAGAC	1 cut(s)	71
BbvCI	CCTCAGC	1 cut(s)	270
BbvI	GCAGC	2 cut(s)	6, 156
BccI	CCATC	2 cut(s)	47, 189
BclI	TGATCA	1 cut(s)	286
BcoDI	GTCTC	1 cut(s)	269
BfaI	CTAG	1 cut(s)	185
BfmI	CTRYAG	1 cut(s)	170
BisI	GCNGC	2 cut(s)	20, 170
BlsI	GCNGC	2 cut(s)	21, 171
Bme18I	GGWCC	1 cut(s)	136
BmgT120I	GGNCC	1 cut(s)	136
BpiI	GAAGAC	1 cut(s)	71
Bpu10I	CCTNAGC	1 cut(s)	270
BsaJI	CCNNGG	1 cut(s)	309
Bse1I	ACTGG	1 cut(s)	256
Bse21I	CCTNAGG	1 cut(s)	132
Bse3DI	GCAATG	1 cut(s)	107
BseDI	CCNNGG	1 cut(s)	309
BseGI	GGATG	1 cut(s)	58
BseMI	GCAATG	1 cut(s)	107
BseMII	CTCAG	3 cut(s)	123, 192, 261
BseNI	ACTGG	1 cut(s)	256
BseRI	GAGGAG	1 cut(s)	287
BseXI	GCAGC	2 cut(s)	6, 156
BsgI	GTGCAG	1 cut(s)	100
BsmAI	GTCTC	1 cut(s)	269
Bsp143I	GATC	2 cut(s)	181, 286
BspCNI	CTCAG	3 cut(s)	124, 193, 262
BspMAI	CTGCAG	1 cut(s)	174
BspPI	GGATC	1 cut(s)	189
BsrDI	GCAATG	1 cut(s)	107
BsrI	ACTGG	1 cut(s)	256
BssECI	CCNNGG	1 cut(s)	309
BssMI	GATC	2 cut(s)	181, 286
BssT1I	CCWWGG	1 cut(s)	309
Bst4CI	ACNGT	3 cut(s)	94, 140, 303
BstDEI	CTNAG	4 cut(s)	23, 132, 201, 270
BstF5I	GGATG	1 cut(s)	58
BstKTI	GATC	2 cut(s)	184, 289
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	2 cut(s)	181, 286
BstMWI	GCNNNNNNNGC	1 cut(s)	123
BstSFI	CTRYAG	1 cut(s)	170
BstV1I	GCAGC	2 cut(s)	6, 156
BstV2I	GAAGAC	1 cut(s)	71
BstX2I	RGATCY	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	181
Bsu36I	CCTNAGG	1 cut(s)	132
BtsCI	GGATG	1 cut(s)	58
Cfr13I	GGNCC	1 cut(s)	136
Csp6I	GTAC	1 cut(s)	90
CviAII	CATG	2 cut(s)	264, 284
CviJI	RGCY	5 cut(s)	19, 126, 200, 269, 296
CviKI_1	RGCY	5 cut(s)	19, 126, 200, 269, 296
CviQI	GTAC	1 cut(s)	90
DdeI	CTNAG	4 cut(s)	23, 132, 201, 270
DpnI	GATC	2 cut(s)	183, 288
DpnII	GATC	2 cut(s)	181, 286
Eco130I	CCWWGG	1 cut(s)	309
Eco47I	GGWCC	1 cut(s)	136
Eco81I	CCTNAGG	1 cut(s)	132
EcoRI	GAATTC	1 cut(s)	236
EcoT14I	CCWWGG	1 cut(s)	309
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	309
FaeI	CATG	2 cut(s)	267, 287
FaiI	YATR	6 cut(s)	6, 62, 72, 265, 285, 299
FatI	CATG	2 cut(s)	263, 283
FbaI	TGATCA	1 cut(s)	286
Fnu4HI	GCNGC	2 cut(s)	20, 170
FokI	GGATG	1 cut(s)	65
Fsp4HI	GCNGC	2 cut(s)	20, 170
FspBI	CTAG	1 cut(s)	185
GluI	GCNGC	2 cut(s)	20, 170
Hin1II	CATG	2 cut(s)	267, 287
HinfI	GANTC	1 cut(s)	229
Hpy188III	TCNNGA	2 cut(s)	13, 233
HpyCH4III	ACNGT	3 cut(s)	94, 140, 303
HpyCH4V	TGCA	5 cut(s)	4, 107, 117, 172, 263
HpyF10VI	GCNNNNNNNGC	1 cut(s)	123
HpyF3I	CTNAG	4 cut(s)	23, 132, 201, 270
Hsp92II	CATG	2 cut(s)	267, 287
Ksp22I	TGATCA	1 cut(s)	286
Kzo9I	GATC	2 cut(s)	181, 286
LmnI	GCTCC	1 cut(s)	208
LpnPI	CCDG	6 cut(s)	86, 134, 144, 158, 260, 269
Lsp1109I	GCAGC	2 cut(s)	6, 156
MaeI	CTAG	1 cut(s)	185
MalI	GATC	2 cut(s)	183, 288
MboI	GATC	2 cut(s)	181, 286
MboII	GAAGA	2 cut(s)	76, 230
MflI	RGATCY	1 cut(s)	181
MluCI	AATT	1 cut(s)	236
MlyI	GAGTC	1 cut(s)	238
MmeI	TCCRAC	1 cut(s)	167
MnlI	CCTC	2 cut(s)	127, 265
Mph1103I	ATGCAT	1 cut(s)	6
MwoI	GCNNNNNNNGC	1 cut(s)	123
NdeII	GATC	2 cut(s)	181, 286
NlaIII	CATG	2 cut(s)	267, 287
NsiI	ATGCAT	1 cut(s)	6
PkrI	GCNGC	2 cut(s)	21, 171
PleI	GAGTC	1 cut(s)	237
PpsI	GAGTC	1 cut(s)	237
PspPI	GGNCC	1 cut(s)	136
PstI	CTGCAG	1 cut(s)	174
PsuI	RGATCY	1 cut(s)	181
RsaI	GTAC	1 cut(s)	91
RsaNI	GTAC	1 cut(s)	90
SatI	GCNGC	2 cut(s)	20, 170
Sau3AI	GATC	2 cut(s)	181, 286
Sau96I	GGNCC	1 cut(s)	136
SchI	GAGTC	1 cut(s)	238
SetI	ASST	6 cut(s)	21, 71, 105, 128, 133, 298
SfcI	CTRYAG	1 cut(s)	170
SinI	GGWCC	1 cut(s)	136
Sse9I	AATT	1 cut(s)	236
SspMI	CTAG	1 cut(s)	185
StyI	CCWWGG	1 cut(s)	309
TaaI	ACNGT	3 cut(s)	94, 140, 303
TasI	AATT	1 cut(s)	236
TseI	GCWGC	2 cut(s)	19, 169
TspDTI	ATGAA	2 cut(s)	77, 90
VpaK11BI	GGWCC	1 cut(s)	136
XapI	RAATTY	1 cut(s)	236
XspI	CTAG	1 cut(s)	185
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.