Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005467.1

Orthogroup ID

OG0002712

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3188

Gene Structure 3188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005467.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 707 bp

atctgaaaccaggagagaaaggcttggactggccaacaaggaagcgcattgcttttggtgcagcccatggcttggagtatctacatgagtattgcaatcctaagattatacaccgtgacttgaaggctgcaaacattcttctagatgattattttgagcctgttcttggagattttgggctagcacagctggtcgatacaaaagcaactcatgttactactcaagtgcgtggtaccatgggtcatattgcccctgaatatttgtccactggaaaatcttcagaaaagactgatgtttttggatatggtatcacactgctcgaacttgtcactggtcagcgtgctatagattttgctcggcttgaagaagaggaggatgttcttctgcttgaccatatcaagaagctgctgagagaaaatagacttgatgacattgtggatggaaatatgaagacctatgatgaaaaagaagttggtactgtcattcaggttgcattgctctgcacccagagcttacctgaggaccgtccaacaatggctgaagtggttagattgctgcagggagtggatctagcagagagatgggctgagtgggagcaacttgaagatgtaaggagtcgtgaattctcactcctgtcgcaccagtttgcatgggctgaggagactacacatgatcaagtagctatacagctgtccaaggcaagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

234

Amino Acids

26.57

Weight (kDa)

5.01

Isoelectric Point (pI)

30.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63710 AT5G63710 AT5G63710 AT5G63710
fragaria_vesca	FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740
malus_domestica	MD15G1139900.v1.1
prunus_persica	Prupe.4G284100_v2.0.a1 Prupe.4G284400_v2.0.a1 Prupe.4G284400_v2.0.a1 Prupe.4G285600_v2.0.a1 Prupe.4G285600_v2.0.a1 Prupe.4G285600_v2.0.a1
pyrus_communis	pycom15g12640
rosa_chinensis	RchiOBHm_Chr3g0484651
rosa_laevigata	RLG00000023209
rosa_multiflora	Rmu_sc0005467.1_g000001 Rmu_sc0006192.1_g000001
rosa_roxburghii	Rroxscaffold_6G00397540
rosa_rugosa	Rorug03G0212900 Rorug03G0213000 Rorug03G0213100 Rorug03G0213200
rosa_samantha	Rh3AG263000 Rh3AG263200 Rh3BG298600 Rh3CG295700 Rh3CG295900 Rh3DG291900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	232
AccB1I	GGYRCC	1 cut(s)	232
AccB7I	CCANNNNNTGG	1 cut(s)	72
AclWI	GGATC	1 cut(s)	575
AcoI	YGGCCR	1 cut(s)	31
AcsI	RAATTY	1 cut(s)	622
AcuI	CTGAAG	2 cut(s)	263, 560
AfaI	GTAC	2 cut(s)	234, 477
AfiI	CCNNNNNNNGG	2 cut(s)	72, 166
AgsI	TTSAA	3 cut(s)	123, 364, 604
AjnI	CCWGG	1 cut(s)	9
AjuI	GAANNNNNNNTTGG	2 cut(s)	455, 487
AluBI	AGCT	5 cut(s)	189, 405, 512, 682, 690
AluI	AGCT	5 cut(s)	189, 405, 512, 682, 690
Alw26I	GTCTC	1 cut(s)	655
AlwI	GGATC	1 cut(s)	575
AoxI	GGCC	1 cut(s)	31
ApeKI	GCWGC	4 cut(s)	61, 127, 405, 555
ApoI	RAATTY	1 cut(s)	622
Asp700I	GAANNNNTTC	1 cut(s)	276
Asp718I	GGTACC	1 cut(s)	232
AspLEI	GCGC	1 cut(s)	47
AspS9I	GGNCC	1 cut(s)	522
AsuNHI	GCTAGC	1 cut(s)	180
AvaII	GGWCC	1 cut(s)	522
AxyI	CCTNAGG	1 cut(s)	518
BalI	TGGCCA	1 cut(s)	33
BanI	GGYRCC	1 cut(s)	232
BbsI	GAAGAC	1 cut(s)	457
BbvCI	CCTCAGC	1 cut(s)	656
BbvI	GCAGC	4 cut(s)	73, 114, 392, 542
BccI	CCATC	2 cut(s)	433, 575
BciT130I	CCWGG	1 cut(s)	11
BclI	TGATCA	1 cut(s)	672
BcoDI	GTCTC	1 cut(s)	655
BfaI	CTAG	3 cut(s)	142, 181, 571
BfmI	CTRYAG	2 cut(s)	344, 556
BisI	GCNGC	4 cut(s)	62, 128, 406, 556
BlsI	GCNGC	4 cut(s)	63, 129, 407, 557
Bme1390I	CCNGG	1 cut(s)	11
Bme18I	GGWCC	1 cut(s)	522
BmgT120I	GGNCC	1 cut(s)	522
BmiI	GGNNCC	1 cut(s)	234
BmrFI	CCNGG	1 cut(s)	11
BmtI	GCTAGC	1 cut(s)	184
BpiI	GAAGAC	1 cut(s)	457
Bpu10I	CCTNAGC	1 cut(s)	656
BpuEI	CTTGAG	1 cut(s)	206
BsaJI	CCNNGG	3 cut(s)	66, 236, 695
Bsc4I	CCNNNNNNNGG	2 cut(s)	72, 166
Bse1I	ACTGG	4 cut(s)	34, 273, 336, 642
Bse21I	CCTNAGG	1 cut(s)	518
Bse3DI	GCAATG	2 cut(s)	47, 493
BseBI	CCWGG	1 cut(s)	11
BseDI	CCNNGG	3 cut(s)	66, 236, 695
BseGI	GGATG	2 cut(s)	381, 444
BseLI	CCNNNNNNNGG	2 cut(s)	72, 166
BseMI	GCAATG	2 cut(s)	47, 493
BseMII	CTCAG	4 cut(s)	400, 509, 578, 647
BseNI	ACTGG	4 cut(s)	34, 273, 336, 642
BseRI	GAGGAG	2 cut(s)	385, 673
BseXI	GCAGC	4 cut(s)	73, 114, 392, 542
BsgI	GTGCAG	2 cut(s)	80, 486
BshFI	GGCC	1 cut(s)	33
BshNI	GGYRCC	1 cut(s)	232
BslI	CCNNNNNNNGG	2 cut(s)	72, 166
BsmAI	GTCTC	1 cut(s)	655
BsnI	GGCC	1 cut(s)	33
Bsp143I	GATC	2 cut(s)	567, 672
Bsp19I	CCATGG	2 cut(s)	66, 236
BspANI	GGCC	1 cut(s)	33
BspCNI	CTCAG	4 cut(s)	401, 510, 579, 648
BspLI	GGNNCC	1 cut(s)	234
BspMAI	CTGCAG	1 cut(s)	560
BspOI	GCTAGC	1 cut(s)	184
BspPI	GGATC	1 cut(s)	575
BspT107I	GGYRCC	1 cut(s)	232
BsrDI	GCAATG	2 cut(s)	47, 493
BsrI	ACTGG	4 cut(s)	34, 273, 336, 642
BssECI	CCNNGG	3 cut(s)	66, 236, 695
BssMI	GATC	2 cut(s)	567, 672
BssT1I	CCWWGG	3 cut(s)	66, 236, 695
Bst2UI	CCWGG	1 cut(s)	11
Bst4CI	ACNGT	3 cut(s)	115, 480, 526
Bst6I	CTCTTC	1 cut(s)	362
BstC8I	GCNNGC	2 cut(s)	182, 341
BstDEI	CTNAG	5 cut(s)	101, 409, 518, 587, 656
BstDSI	CCRYGG	2 cut(s)	66, 236
BstF5I	GGATG	2 cut(s)	381, 444
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	2 cut(s)	570, 675
BstMAI	GTCTC	1 cut(s)	655
BstMBI	GATC	2 cut(s)	567, 672
BstMWI	GCNNNNNNNGC	3 cut(s)	58, 186, 509
BstNI	CCWGG	1 cut(s)	11
BstSCI	CCNGG	1 cut(s)	9
BstSFI	CTRYAG	2 cut(s)	344, 556
BstV1I	GCAGC	4 cut(s)	73, 114, 392, 542
BstV2I	GAAGAC	1 cut(s)	457
BstX2I	RGATCY	1 cut(s)	567
BstYI	RGATCY	1 cut(s)	567
Bsu36I	CCTNAGG	1 cut(s)	518
BsuRI	GGCC	1 cut(s)	33
BtgI	CCRYGG	2 cut(s)	66, 236
BtsCI	GGATG	2 cut(s)	381, 444
BtsI	GCAGTG	1 cut(s)	313
BtsIMutI	CAGTG	3 cut(s)	266, 313, 329
Cac8I	GCNNGC	2 cut(s)	182, 341
CfoI	GCGC	1 cut(s)	47
Cfr13I	GGNCC	1 cut(s)	522
Csp6I	GTAC	2 cut(s)	233, 476
CviAII	CATG	6 cut(s)	67, 85, 211, 237, 650, 670
CviQI	GTAC	2 cut(s)	233, 476
DdeI	CTNAG	5 cut(s)	101, 409, 518, 587, 656
DpnI	GATC	2 cut(s)	569, 674
DpnII	GATC	2 cut(s)	567, 672
EaeI	YGGCCR	1 cut(s)	31
Eam1104I	CTCTTC	1 cut(s)	362
EarI	CTCTTC	1 cut(s)	362
Eco130I	CCWWGG	3 cut(s)	66, 236, 695
Eco47I	GGWCC	1 cut(s)	522
Eco57I	CTGAAG	2 cut(s)	263, 560
Eco81I	CCTNAGG	1 cut(s)	518
EcoRI	GAATTC	1 cut(s)	622
EcoRII	CCWGG	1 cut(s)	9
EcoT14I	CCWWGG	3 cut(s)	66, 236, 695
ErhI	CCWWGG	3 cut(s)	66, 236, 695
FaeI	CATG	6 cut(s)	70, 88, 214, 240, 653, 673
FatI	CATG	6 cut(s)	66, 84, 210, 236, 649, 669
FbaI	TGATCA	1 cut(s)	672
Fnu4HI	GCNGC	4 cut(s)	62, 128, 406, 556
FokI	GGATG	2 cut(s)	388, 451
Fsp4HI	GCNGC	4 cut(s)	62, 128, 406, 556
FspBI	CTAG	3 cut(s)	142, 181, 571
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	4 cut(s)	62, 128, 406, 556
HaeIII	GGCC	1 cut(s)	33
HhaI	GCGC	1 cut(s)	47
Hin1II	CATG	6 cut(s)	70, 88, 214, 240, 653, 673
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HinfI	GANTC	1 cut(s)	615
Hpy166II	GTNNAC	1 cut(s)	266
Hpy188I	TCNGA	2 cut(s)	5, 282
Hpy188III	TCNNGA	3 cut(s)	142, 399, 619
Hpy8I	GTNNAC	1 cut(s)	266
HpyAV	CCTTC	1 cut(s)	117
HpyCH4III	ACNGT	3 cut(s)	115, 480, 526
HpyCH4V	TGCA	7 cut(s)	61, 95, 130, 493, 503, 558, 649
HpyF10VI	GCNNNNNNNGC	3 cut(s)	58, 186, 509
HpyF3I	CTNAG	5 cut(s)	101, 409, 518, 587, 656
Hsp92II	CATG	6 cut(s)	70, 88, 214, 240, 653, 673
HspAI	GCGC	1 cut(s)	45
KpnI	GGTACC	1 cut(s)	236
Ksp22I	TGATCA	1 cut(s)	672
Kzo9I	GATC	2 cut(s)	567, 672
LmnI	GCTCC	1 cut(s)	594
Lsp1109I	GCAGC	4 cut(s)	73, 114, 392, 542
MaeI	CTAG	3 cut(s)	142, 181, 571
MaeIII	GTNAC	3 cut(s)	115, 213, 327
MalI	GATC	2 cut(s)	569, 674
MboI	GATC	2 cut(s)	567, 672
MboII	GAAGA	7 cut(s)	130, 269, 373, 376, 379, 462, 616
MflI	RGATCY	1 cut(s)	567
MlsI	TGGCCA	1 cut(s)	33
MluCI	AATT	1 cut(s)	622
MluNI	TGGCCA	1 cut(s)	33
MlyI	GAGTC	1 cut(s)	624
MmeI	TCCRAC	1 cut(s)	553
MnlI	CCTC	4 cut(s)	363, 366, 513, 651
Mox20I	TGGCCA	1 cut(s)	33
MroXI	GAANNNNTTC	1 cut(s)	276
MscI	TGGCCA	1 cut(s)	33
Msp20I	TGGCCA	1 cut(s)	33
MspA1I	CMGCKG	2 cut(s)	189, 690
MspR9I	CCNGG	1 cut(s)	11
MvaI	CCWGG	1 cut(s)	11
MwoI	GCNNNNNNNGC	3 cut(s)	58, 186, 509
NcoI	CCATGG	2 cut(s)	66, 236
NdeII	GATC	2 cut(s)	567, 672
NheI	GCTAGC	1 cut(s)	180
NlaIII	CATG	6 cut(s)	70, 88, 214, 240, 653, 673
NlaIV	GGNNCC	1 cut(s)	234
NmeAIII	GCCGAG	1 cut(s)	336
NmuCI	GTSAC	2 cut(s)	115, 327
PdmI	GAANNNNTTC	1 cut(s)	276
PflMI	CCANNNNNTGG	1 cut(s)	72
PkrI	GCNGC	4 cut(s)	63, 129, 407, 557
PleI	GAGTC	1 cut(s)	623
PpsI	GAGTC	1 cut(s)	623
Psp6I	CCWGG	1 cut(s)	9
PspGI	CCWGG	1 cut(s)	9
PspN4I	GGNNCC	1 cut(s)	234
PspPI	GGNCC	1 cut(s)	522
PstI	CTGCAG	1 cut(s)	560
PsuI	RGATCY	1 cut(s)	567
PvuII	CAGCTG	2 cut(s)	189, 690
RsaI	GTAC	2 cut(s)	234, 477
RsaNI	GTAC	2 cut(s)	233, 476
SatI	GCNGC	4 cut(s)	62, 128, 406, 556
Sau3AI	GATC	2 cut(s)	567, 672
Sau96I	GGNCC	1 cut(s)	522
SchI	GAGTC	1 cut(s)	624
ScrFI	CCNGG	1 cut(s)	11
SetI	ASST	8 cut(s)	191, 407, 457, 491, 514, 519, 684, 692
SfcI	CTRYAG	2 cut(s)	344, 556
SinI	GGWCC	1 cut(s)	522
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
Sse9I	AATT	1 cut(s)	622
SspI	AATATT	1 cut(s)	259
SspMI	CTAG	3 cut(s)	142, 181, 571
StyD4I	CCNGG	1 cut(s)	9
StyI	CCWWGG	3 cut(s)	66, 236, 695
TaaI	ACNGT	3 cut(s)	115, 480, 526
TaqI	TCGA	2 cut(s)	194, 320
TasI	AATT	1 cut(s)	622
TscAI	CASTG	3 cut(s)	273, 320, 336
TseFI	GTSAC	2 cut(s)	115, 327
TseI	GCWGC	4 cut(s)	61, 127, 405, 555
Tsp45I	GTSAC	2 cut(s)	115, 327
TspDTI	ATGAA	2 cut(s)	463, 476
TspRI	CASTG	3 cut(s)	273, 320, 336
Van91I	CCANNNNNTGG	1 cut(s)	72
VpaK11BI	GGWCC	1 cut(s)	522
XapI	RAATTY	1 cut(s)	622
XbaI	TCTAGA	1 cut(s)	141
XmnI	GAANNNNTTC	1 cut(s)	276
XspI	CTAG	3 cut(s)	142, 181, 571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.