Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002712

Physical Location & Seq

Genomic Coordinates Reverse (-)

19192990 .. 19194185

Gene Structure 1196 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0212900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGTCAGAGAAACAAGCCCACTTGAATGGAGCCAACTACGGCCCATCAGGCCCGCCAAGAGAGACCTACCACCGCCCCGGCCGCGGCGGAGGTCTCCTCAGCTGCTGCTGCAGCTGCATCTTCAGTCTCGTCTTCAAGCTCATCTTCGCCGCAGTTGTATTCTTGGGCTTAGCCGTCCTCGTCTTCTGGCTCATAGTCAGGCCAACCGGAGTCAAGTTCCACGTCACGGATGCCACCCTCACCCAGTTCAACTTCTCCTCCGACAACAACCTCCACTACAATCTCGCTGCCAACCTCACCATCCGAAACCCCAACAAGAAGATCGGCATCTACTACGATCGCATCGAAGCCAGAGCCCTGTACGAGGGGCAAAGGTTCAGTACGGTTACTCTCACGCCGTTTTACCAAGGCCATAAAACTACAAACGTTCTGAACCCGGTGTTTCAGGGACAACAATTGATTGTTGGATCCAACTTGCTTGAGGAGTTTAATCAACAGAAGAGCGCAGGGGTTTACGAGATTGAGATGAAGCTTTATCTGAGGATTCGGTTCAAGTTGGGTAGAATCAAGACCGGAAAGTTCAAGCCTAGAATTAAGTGTGACTTGAAGGTTCCTTTGAACCAGAATGGGAATTCAGTTGGTACTTTTCAGACTGAGAAGTGCTCCATTGATTACTTCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

227

Amino Acids

25.61

Weight (kDa)

9.6

Isoelectric Point (pI)

26.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	99 - 199	9.1e-11	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63710 AT5G63710 AT5G63710 AT5G63710
fragaria_vesca	FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740
malus_domestica	MD15G1139900.v1.1
prunus_persica	Prupe.4G284100_v2.0.a1 Prupe.4G284400_v2.0.a1 Prupe.4G284400_v2.0.a1 Prupe.4G285600_v2.0.a1 Prupe.4G285600_v2.0.a1 Prupe.4G285600_v2.0.a1
pyrus_communis	pycom15g12640
rosa_chinensis	RchiOBHm_Chr3g0484651
rosa_laevigata	RLG00000023209
rosa_multiflora	Rmu_sc0005467.1_g000001 Rmu_sc0006192.1_g000001
rosa_roxburghii	Rroxscaffold_6G00397540
rosa_rugosa	Rorug03G0212900 Rorug03G0213000 Rorug03G0213100 Rorug03G0213200
rosa_samantha	Rh3AG263000 Rh3AG263200 Rh3BG298600 Rh3CG295700 Rh3CG295900 Rh3DG291900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	84
AciI	CCGC	6 cut(s)	53, 73, 82, 84, 87, 150
AclI	AACGTT	1 cut(s)	426
AclWI	GGATC	2 cut(s)	462, 475
AcoI	YGGCCR	1 cut(s)	79
AcsI	RAATTY	1 cut(s)	631
AcuI	CTGAAG	1 cut(s)	106
AfaI	GTAC	3 cut(s)	362, 382, 643
AfiI	CCNNNNNNNGG	3 cut(s)	83, 226, 364
AgsI	TTSAA	8 cut(s)	25, 136, 250, 553, 583, 607, 619, 679
AjiI	CACGTC	1 cut(s)	223
AluBI	AGCT	4 cut(s)	102, 114, 139, 532
AluI	AGCT	4 cut(s)	102, 114, 139, 532
Alw21I	GWGCWC	1 cut(s)	665
Alw26I	GTCTC	3 cut(s)	56, 98, 131
AlwI	GGATC	2 cut(s)	462, 475
AlwNI	CAGNNNCTG	1 cut(s)	105
AoxI	GGCC	5 cut(s)	40, 49, 79, 200, 409
ApeKI	GCWGC	6 cut(s)	102, 105, 108, 111, 114, 287
ApoI	RAATTY	1 cut(s)	631
AspLEI	GCGC	1 cut(s)	506
AspS9I	GGNCC	2 cut(s)	41, 50
AsuC2I	CCSGG	2 cut(s)	78, 437
AsuHPI	GGTGA	2 cut(s)	232, 289
BamHI	GGATCC	1 cut(s)	467
BanII	GRGCYC	1 cut(s)	358
BbsI	GAAGAC	2 cut(s)	124, 175
Bbv12I	GWGCWC	1 cut(s)	665
BbvCI	CCTCAGC	1 cut(s)	98
BbvI	GCAGC	6 cut(s)	89, 92, 95, 101, 123, 274
BccI	CCATC	2 cut(s)	52, 308
BceAI	ACGGC	3 cut(s)	55, 158, 382
BcnI	CCSGG	2 cut(s)	78, 437
BcoDI	GTCTC	3 cut(s)	56, 98, 131
BfaI	CTAG	1 cut(s)	588
BfmI	CTRYAG	1 cut(s)	109
BglI	GCCNNNNNGGC	1 cut(s)	48
BisI	GCNGC	9 cut(s)	82, 85, 103, 106, 109, 112, 115, 150, 288
BlpI	GCTNAGC	1 cut(s)	169
BlsI	GCNGC	9 cut(s)	83, 86, 104, 107, 110, 113, 116, 151, 289
Bme1390I	CCNGG	2 cut(s)	78, 437
BmgBI	CACGTC	1 cut(s)	223
BmgT120I	GGNCC	2 cut(s)	41, 50
BmiI	GGNNCC	3 cut(s)	31, 469, 612
BmrFI	CCNGG	2 cut(s)	78, 437
BmrI	ACTGGG	1 cut(s)	238
BmsI	GCATC	4 cut(s)	126, 220, 336, 351
BmuI	ACTGGG	1 cut(s)	238
BpiI	GAAGAC	2 cut(s)	124, 175
BplI	GAGNNNNNCTC	4 cut(s)	81, 113, 647, 679
Bpu10I	CCTNAGC	1 cut(s)	98
Bpu1102I	GCTNAGC	1 cut(s)	169
BpuEI	CTTGAG	1 cut(s)	500
BpuMI	CCSGG	2 cut(s)	78, 437
BsaBI	GATNNNNATC	1 cut(s)	326
BsaI	GGTCTC	2 cut(s)	56, 98
BsaJI	CCNNGG	3 cut(s)	76, 82, 406
BsaWI	WCCGGW	2 cut(s)	206, 572
BsaXI	ACNNNNNCTCC	2 cut(s)	242, 272
Bsc4I	CCNNNNNNNGG	3 cut(s)	83, 226, 364
Bse1I	ACTGG	1 cut(s)	244
Bse8I	GATNNNNATC	1 cut(s)	326
BseDI	CCNNGG	3 cut(s)	76, 82, 406
BseGI	GGATG	2 cut(s)	235, 300
BseJI	GATNNNNATC	1 cut(s)	326
BseLI	CCNNNNNNNGG	3 cut(s)	83, 226, 364
BseMII	CTCAG	3 cut(s)	112, 530, 645
BseNI	ACTGG	1 cut(s)	244
BseRI	GAGGAG	3 cut(s)	86, 247, 497
BseX3I	CGGCCG	1 cut(s)	79
BseXI	GCAGC	6 cut(s)	89, 92, 95, 101, 123, 274
Bsh1236I	CGCG	1 cut(s)	84
Bsh1285I	CGRYCG	2 cut(s)	82, 340
BshFI	GGCC	5 cut(s)	42, 51, 81, 202, 411
BsiEI	CGRYCG	2 cut(s)	82, 340
BsiHKAI	GWGCWC	1 cut(s)	665
BsiSI	CCGG	4 cut(s)	78, 207, 437, 573
BslFI	GGGAC	1 cut(s)	462
BslI	CCNNNNNNNGG	3 cut(s)	83, 226, 364
BsmAI	GTCTC	3 cut(s)	56, 98, 131
BsmFI	GGGAC	1 cut(s)	462
BsnI	GGCC	5 cut(s)	42, 51, 81, 202, 411
Bso31I	GGTCTC	2 cut(s)	56, 98
Bsp1286I	GDGCHC	2 cut(s)	358, 665
Bsp143I	GATC	3 cut(s)	321, 337, 467
Bsp1720I	GCTNAGC	1 cut(s)	169
BspACI	CCGC	6 cut(s)	53, 73, 82, 84, 87, 150
BspANI	GGCC	5 cut(s)	42, 51, 81, 202, 411
BspCNI	CTCAG	3 cut(s)	111, 531, 646
BspFNI	CGCG	1 cut(s)	84
BspLI	GGNNCC	3 cut(s)	31, 469, 612
BspMAI	CTGCAG	1 cut(s)	113
BspPI	GGATC	2 cut(s)	462, 475
BspQI	GCTCTTC	1 cut(s)	494
BspTNI	GGTCTC	2 cut(s)	56, 98
BsrI	ACTGG	1 cut(s)	244
BssECI	CCNNGG	3 cut(s)	76, 82, 406
BssMI	GATC	3 cut(s)	321, 337, 467
BssT1I	CCWWGG	1 cut(s)	406
Bst4CI	ACNGT	1 cut(s)	385
Bst6I	CTCTTC	1 cut(s)	494
BstC8I	GCNNGC	1 cut(s)	53
BstDEI	CTNAG	4 cut(s)	98, 169, 539, 654
BstDSI	CCRYGG	1 cut(s)	82
BstENI	CCTNNNNNAGG	1 cut(s)	362
BstF5I	GGATG	2 cut(s)	235, 300
BstFNI	CGCG	1 cut(s)	84
BstHHI	GCGC	1 cut(s)	506
BstKTI	GATC	3 cut(s)	324, 340, 470
BstMAI	GTCTC	3 cut(s)	56, 98, 131
BstMBI	GATC	3 cut(s)	321, 337, 467
BstMCI	CGRYCG	2 cut(s)	82, 340
BstMWI	GCNNNNNNNGC	5 cut(s)	48, 81, 108, 111, 114
BstSCI	CCNGG	2 cut(s)	76, 435
BstSFI	CTRYAG	1 cut(s)	109
BstUI	CGCG	1 cut(s)	84
BstV1I	GCAGC	6 cut(s)	89, 92, 95, 101, 123, 274
BstV2I	GAAGAC	2 cut(s)	124, 175
BstX2I	RGATCY	1 cut(s)	467
BstXI	CCANNNNNNTGG	1 cut(s)	26
BstYI	RGATCY	1 cut(s)	467
BstZI	CGGCCG	1 cut(s)	79
BsuRI	GGCC	5 cut(s)	42, 51, 81, 202, 411
BtgI	CCRYGG	1 cut(s)	82
BtrI	CACGTC	1 cut(s)	223
BtsCI	GGATG	2 cut(s)	235, 300
Cac8I	GCNNGC	1 cut(s)	53
CaiI	CAGNNNCTG	1 cut(s)	105
CfoI	GCGC	1 cut(s)	506
Cfr13I	GGNCC	2 cut(s)	41, 50
Cfr42I	CCGCGG	1 cut(s)	85
Csp6I	GTAC	3 cut(s)	361, 381, 642
CviQI	GTAC	3 cut(s)	361, 381, 642
DdeI	CTNAG	4 cut(s)	98, 169, 539, 654
DpnI	GATC	3 cut(s)	323, 339, 469
DpnII	GATC	3 cut(s)	321, 337, 467
EaeI	YGGCCR	1 cut(s)	79
EagI	CGGCCG	1 cut(s)	79
Eam1104I	CTCTTC	1 cut(s)	494
EarI	CTCTTC	1 cut(s)	494
EciI	GGCGGA	1 cut(s)	102
EclXI	CGGCCG	1 cut(s)	79
Eco130I	CCWWGG	1 cut(s)	406
Eco24I	GRGCYC	1 cut(s)	358
Eco31I	GGTCTC	2 cut(s)	56, 98
Eco52I	CGGCCG	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	106
EcoNI	CCTNNNNNAGG	1 cut(s)	362
EcoRI	GAATTC	1 cut(s)	631
EcoT14I	CCWWGG	1 cut(s)	406
EcoT38I	GRGCYC	1 cut(s)	358
ErhI	CCWWGG	1 cut(s)	406
FaiI	YATR	2 cut(s)	194, 414
FalI	AAGNNNNNCTT	4 cut(s)	128, 160, 587, 619
FaqI	GGGAC	1 cut(s)	462
FauI	CCCGC	1 cut(s)	60
Fnu4HI	GCNGC	9 cut(s)	82, 85, 103, 106, 109, 112, 115, 150, 288
FokI	GGATG	2 cut(s)	242, 287
FriOI	GRGCYC	1 cut(s)	358
Fsp4HI	GCNGC	9 cut(s)	82, 85, 103, 106, 109, 112, 115, 150, 288
FspBI	CTAG	1 cut(s)	588
GlaI	GCGC	1 cut(s)	505
GluI	GCNGC	9 cut(s)	82, 85, 103, 106, 109, 112, 115, 150, 288
HaeIII	GGCC	5 cut(s)	42, 51, 81, 202, 411
HapII	CCGG	4 cut(s)	78, 207, 437, 573
HhaI	GCGC	1 cut(s)	506
Hin6I	GCGC	1 cut(s)	504
HinP1I	GCGC	1 cut(s)	504
HindIII	AAGCTT	1 cut(s)	530
HinfI	GANTC	3 cut(s)	210, 544, 564
HpaII	CCGG	4 cut(s)	78, 207, 437, 573
HphI	GGTGA	2 cut(s)	232, 289
Hpy166II	GTNNAC	1 cut(s)	514
Hpy188I	TCNGA	6 cut(s)	7, 262, 305, 432, 540, 651
Hpy188III	TCNNGA	1 cut(s)	568
Hpy8I	GTNNAC	1 cut(s)	514
HpyAV	CCTTC	1 cut(s)	601
HpyCH4III	ACNGT	1 cut(s)	385
HpyCH4IV	ACGT	2 cut(s)	222, 426
HpyCH4V	TGCA	2 cut(s)	111, 117
HpyF10VI	GCNNNNNNNGC	5 cut(s)	48, 81, 108, 111, 114
HpyF3I	CTNAG	4 cut(s)	98, 169, 539, 654
HpySE526I	ACGT	2 cut(s)	222, 426
HspAI	GCGC	1 cut(s)	504
KspI	CCGCGG	1 cut(s)	85
Kzo9I	GATC	3 cut(s)	321, 337, 467
LguI	GCTCTTC	1 cut(s)	494
LmnI	GCTCC	2 cut(s)	29, 668
Lsp1109I	GCAGC	6 cut(s)	89, 92, 95, 101, 123, 274
LweI	GCATC	4 cut(s)	126, 220, 336, 351
MaeI	CTAG	1 cut(s)	588
MaeII	ACGT	2 cut(s)	222, 426
MaeIII	GTNAC	3 cut(s)	223, 385, 599
MalI	GATC	3 cut(s)	323, 339, 469
MboI	GATC	3 cut(s)	321, 337, 467
MboII	GAAGA	6 cut(s)	112, 124, 136, 175, 331, 511
MfeI	CAATTG	2 cut(s)	455, 679
MflI	RGATCY	1 cut(s)	467
MhlI	GDGCHC	2 cut(s)	358, 665
MluCI	AATT	4 cut(s)	455, 591, 631, 679
MlyI	GAGTC	1 cut(s)	219
MmeI	TCCRAC	3 cut(s)	285, 445, 495
MseI	TTAA	2 cut(s)	489, 594
MslI	CAYNNNNRTG	1 cut(s)	24
MspA1I	CMGCKG	3 cut(s)	84, 102, 114
MspI	CCGG	4 cut(s)	78, 207, 437, 573
MspR9I	CCNGG	2 cut(s)	78, 437
MunI	CAATTG	2 cut(s)	455, 679
MvnI	CGCG	1 cut(s)	84
MwoI	GCNNNNNNNGC	5 cut(s)	48, 81, 108, 111, 114
NciI	CCSGG	2 cut(s)	78, 437
NdeII	GATC	3 cut(s)	321, 337, 467
NlaIV	GGNNCC	3 cut(s)	31, 469, 612
NmuCI	GTSAC	2 cut(s)	223, 599
PciSI	GCTCTTC	1 cut(s)	494
PcsI	WCGNNNNNNNCGW	1 cut(s)	342
PfeI	GAWTC	2 cut(s)	544, 564
PkrI	GCNGC	9 cut(s)	83, 86, 104, 107, 110, 113, 116, 151, 289
Ple19I	CGATCG	1 cut(s)	340
PleI	GAGTC	1 cut(s)	218
PpsI	GAGTC	1 cut(s)	218
Psp1406I	AACGTT	1 cut(s)	426
PspN4I	GGNNCC	3 cut(s)	31, 469, 612
PspPI	GGNCC	2 cut(s)	41, 50
PstI	CTGCAG	1 cut(s)	113
PstNI	CAGNNNCTG	1 cut(s)	105
PsuI	RGATCY	1 cut(s)	467
PvuI	CGATCG	1 cut(s)	340
PvuII	CAGCTG	2 cut(s)	102, 114
RsaI	GTAC	3 cut(s)	362, 382, 643
RsaNI	GTAC	3 cut(s)	361, 381, 642
RseI	CAYNNNNRTG	1 cut(s)	24
SacII	CCGCGG	1 cut(s)	85
SapI	GCTCTTC	1 cut(s)	494
SaqAI	TTAA	2 cut(s)	489, 594
SatI	GCNGC	9 cut(s)	82, 85, 103, 106, 109, 112, 115, 150, 288
Sau3AI	GATC	3 cut(s)	321, 337, 467
Sau96I	GGNCC	2 cut(s)	41, 50
SchI	GAGTC	1 cut(s)	219
ScrFI	CCNGG	2 cut(s)	78, 437
SduI	GDGCHC	2 cut(s)	358, 665
SfaNI	GCATC	4 cut(s)	126, 220, 336, 351
SfcI	CTRYAG	1 cut(s)	109
SfiI	GGCCNNNNNGGCC	1 cut(s)	48
Sfr303I	CCGCGG	1 cut(s)	85
SgrBI	CCGCGG	1 cut(s)	85
SmiMI	CAYNNNNRTG	1 cut(s)	24
SmlI	CTYRAG	1 cut(s)	479
SmoI	CTYRAG	1 cut(s)	479
Sse9I	AATT	4 cut(s)	455, 591, 631, 679
SsiI	CCGC	6 cut(s)	53, 73, 82, 84, 87, 150
SspMI	CTAG	1 cut(s)	588
StyD4I	CCNGG	2 cut(s)	76, 435
StyI	CCWWGG	1 cut(s)	406
TaaI	ACNGT	1 cut(s)	385
TaiI	ACGT	2 cut(s)	225, 429
TaqI	TCGA	1 cut(s)	345
TasI	AATT	4 cut(s)	455, 591, 631, 679
TauI	GCSGC	3 cut(s)	84, 87, 152
TfiI	GAWTC	2 cut(s)	544, 564
Tru1I	TTAA	2 cut(s)	489, 594
Tru9I	TTAA	2 cut(s)	489, 594
TseFI	GTSAC	2 cut(s)	223, 599
TseI	GCWGC	6 cut(s)	102, 105, 108, 111, 114, 287
Tsp45I	GTSAC	2 cut(s)	223, 599
TspDTI	ATGAA	1 cut(s)	542
TspGWI	ACGGA	1 cut(s)	242
XagI	CCTNNNNNAGG	1 cut(s)	362
XapI	RAATTY	1 cut(s)	631
XspI	CTAG	1 cut(s)	588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.