Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002712

Physical Location & Seq

Genomic Coordinates Reverse (-)

24652216 .. 24654492

Gene Structure 2277 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G284400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGCACAAACTAACACATGATGTCGTTGTTGATGTTACAGGTGAAGATGAGTGCAAAATTTCCTTTGGCCAGTTAAGAAGATTTTCTTGGCGTGAAATTCAGCTTGCTACAGATAACTTCGATGAAAGCAACATAATTGGACAAGGGGGCTTTGGAAGAGTTTACAAAGGTGTCCTCTCAGACAATGTAAAGGTTGCAGTGAAACGCCTTACAGATTATAACAGTCCTGGTGGAGAGGCTGCATTCTTGAGAGAAGTACAACTAATTAGCGTTGCAGTTCACAAGAATCTTTTACGTTTGATTGGATTTTGTACAACTTCATCTGAGAGAATCCTTGTTTATCCATTCATGAAAAATCTTAGTGTTGCGTATCGCTTGAGAGATTTAAAACCTGGTGAGAAAGGCTTGGACTGGTCAACAAGGAAACGCATTGCTTTTGGTGCAGCCCATGGCTTAGAGTATTTACATGAGCATTGTAATCCTAAGATTATACACCGTGACTTAAAGGCTGCAAACATTCTTCTAGATGATAATTTTGAGCCCGTTCTTGGAGATTTTGGGCTAGCAAAGCTGGTTGATACAAAATCAACTCACGTTACCACTCAAGTGCGTGGTACCATGAGTCATATTGCCCCAGAATATTTGTCCACTGGAAAATCGTCAGAAAAGACTGATGTTTTTGGATATGGTATCACACTTCTCGAACTTGTCACTGGTCAGCGTGCTATAGATTTTGCTCGGCTTGAAGAAGAGGAGGATGTTCTTCTGCTTGATCATTGTTACAAGCGGTACTTAATTTGGGCTAAAGAAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

272

Amino Acids

30.61

Weight (kDa)

6.56

Isoelectric Point (pI)

34.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63710 AT5G63710 AT5G63710 AT5G63710
fragaria_vesca	FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740
malus_domestica	MD15G1139900.v1.1
prunus_persica	Prupe.4G284100_v2.0.a1 Prupe.4G284400_v2.0.a1 Prupe.4G284400_v2.0.a1 Prupe.4G285600_v2.0.a1 Prupe.4G285600_v2.0.a1 Prupe.4G285600_v2.0.a1
pyrus_communis	pycom15g12640
rosa_chinensis	RchiOBHm_Chr3g0484651
rosa_laevigata	RLG00000023209
rosa_multiflora	Rmu_sc0005467.1_g000001 Rmu_sc0006192.1_g000001
rosa_roxburghii	Rroxscaffold_6G00397540
rosa_rugosa	Rorug03G0212900 Rorug03G0213000 Rorug03G0213100 Rorug03G0213200
rosa_samantha	Rh3AG263000 Rh3AG263200 Rh3BG298600 Rh3CG295700 Rh3CG295900 Rh3DG291900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	219
Acc65I	GGTACC	1 cut(s)	614
AccB1I	GGYRCC	1 cut(s)	614
AciI	CCGC	1 cut(s)	787
AcoI	YGGCCR	1 cut(s)	67
AcsI	RAATTY	2 cut(s)	57, 96
AfaI	GTAC	4 cut(s)	258, 313, 616, 791
AfiI	CCNNNNNNNGG	1 cut(s)	548
AgsI	TTSAA	1 cut(s)	746
AjnI	CCWGG	2 cut(s)	226, 391
AjuI	GAANNNNNNNTTGG	2 cut(s)	70, 102
AleI	CACNNNNGTG	1 cut(s)	605
AluBI	AGCT	2 cut(s)	103, 571
AluI	AGCT	2 cut(s)	103, 571
AoxI	GGCC	1 cut(s)	67
ApeKI	GCWGC	3 cut(s)	239, 443, 509
ApoI	RAATTY	2 cut(s)	57, 96
Asp700I	GAANNNNTTC	1 cut(s)	82
Asp718I	GGTACC	1 cut(s)	614
AsuHPI	GGTGA	2 cut(s)	53, 407
AsuNHI	GCTAGC	1 cut(s)	562
BalI	TGGCCA	1 cut(s)	69
BanI	GGYRCC	1 cut(s)	614
BanII	GRGCYC	1 cut(s)	543
BbvI	GCAGC	3 cut(s)	226, 455, 496
BciT130I	CCWGG	2 cut(s)	228, 393
BclI	TGATCA	1 cut(s)	772
BfaI	CTAG	2 cut(s)	524, 563
BfmI	CTRYAG	2 cut(s)	108, 726
BisI	GCNGC	3 cut(s)	240, 444, 510
BlsI	GCNGC	3 cut(s)	241, 445, 511
Bme1390I	CCNGG	2 cut(s)	228, 393
BmiI	GGNNCC	1 cut(s)	616
BmrFI	CCNGG	2 cut(s)	228, 393
BmtI	GCTAGC	1 cut(s)	566
BpuEI	CTTGAG	3 cut(s)	268, 397, 588
BsaJI	CCNNGG	1 cut(s)	448
Bsc4I	CCNNNNNNNGG	1 cut(s)	548
Bse1I	ACTGG	4 cut(s)	70, 416, 655, 718
Bse3DI	GCAATG	1 cut(s)	429
BseBI	CCWGG	2 cut(s)	228, 393
BseDI	CCNNGG	1 cut(s)	448
BseGI	GGATG	1 cut(s)	763
BseLI	CCNNNNNNNGG	1 cut(s)	548
BseMI	GCAATG	1 cut(s)	429
BseMII	CTCAG	2 cut(s)	192, 315
BseNI	ACTGG	4 cut(s)	70, 416, 655, 718
BseRI	GAGGAG	1 cut(s)	767
BseXI	GCAGC	3 cut(s)	226, 455, 496
BsgI	GTGCAG	1 cut(s)	462
BshFI	GGCC	1 cut(s)	69
BshNI	GGYRCC	1 cut(s)	614
BslI	CCNNNNNNNGG	1 cut(s)	548
BsmI	GAATGC	1 cut(s)	242
BsnI	GGCC	1 cut(s)	69
Bsp1286I	GDGCHC	1 cut(s)	543
Bsp1407I	TGTACA	1 cut(s)	311
Bsp143I	GATC	1 cut(s)	772
Bsp19I	CCATGG	1 cut(s)	448
BspACI	CCGC	1 cut(s)	787
BspANI	GGCC	1 cut(s)	69
BspCNI	CTCAG	2 cut(s)	191, 316
BspHI	TCATGA	1 cut(s)	348
BspLI	GGNNCC	1 cut(s)	616
BspOI	GCTAGC	1 cut(s)	566
BspT107I	GGYRCC	1 cut(s)	614
BsrDI	GCAATG	1 cut(s)	429
BsrGI	TGTACA	1 cut(s)	311
BsrI	ACTGG	4 cut(s)	70, 416, 655, 718
BssECI	CCNNGG	1 cut(s)	448
BssMI	GATC	1 cut(s)	772
BssT1I	CCWWGG	1 cut(s)	448
Bst2UI	CCWGG	2 cut(s)	228, 393
Bst4CI	ACNGT	2 cut(s)	224, 497
Bst6I	CTCTTC	2 cut(s)	151, 744
BstAUI	TGTACA	1 cut(s)	311
BstC8I	GCNNGC	3 cut(s)	105, 564, 723
BstDEI	CTNAG	5 cut(s)	178, 324, 359, 454, 483
BstDSI	CCRYGG	1 cut(s)	448
BstF5I	GGATG	1 cut(s)	763
BstKTI	GATC	1 cut(s)	775
BstMBI	GATC	1 cut(s)	772
BstMWI	GCNNNNNNNGC	2 cut(s)	440, 568
BstNI	CCWGG	2 cut(s)	228, 393
BstSCI	CCNGG	2 cut(s)	226, 391
BstSFI	CTRYAG	2 cut(s)	108, 726
BstV1I	GCAGC	3 cut(s)	226, 455, 496
BsuRI	GGCC	1 cut(s)	69
BtgI	CCRYGG	1 cut(s)	448
BtsCI	GGATG	1 cut(s)	763
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	3 cut(s)	204, 648, 711
Cac8I	GCNNGC	3 cut(s)	105, 564, 723
CciI	TCATGA	1 cut(s)	348
CsiI	ACCWGGT	1 cut(s)	391
Csp6I	GTAC	4 cut(s)	257, 312, 615, 790
CviAII	CATG	5 cut(s)	17, 349, 449, 467, 619
CviQI	GTAC	4 cut(s)	257, 312, 615, 790
DdeI	CTNAG	5 cut(s)	178, 324, 359, 454, 483
DpnI	GATC	1 cut(s)	774
DpnII	GATC	1 cut(s)	772
DraI	TTTAAA	1 cut(s)	387
EaeI	YGGCCR	1 cut(s)	67
Eam1104I	CTCTTC	2 cut(s)	151, 744
EarI	CTCTTC	2 cut(s)	151, 744
Eco130I	CCWWGG	1 cut(s)	448
Eco24I	GRGCYC	1 cut(s)	543
EcoRII	CCWGG	2 cut(s)	226, 391
EcoT14I	CCWWGG	1 cut(s)	448
EcoT38I	GRGCYC	1 cut(s)	543
ErhI	CCWWGG	1 cut(s)	448
FaeI	CATG	5 cut(s)	20, 352, 452, 470, 622
FalI	AAGNNNNNCTT	4 cut(s)	70, 102, 776, 808
FatI	CATG	5 cut(s)	16, 348, 448, 466, 618
FbaI	TGATCA	1 cut(s)	772
Fnu4HI	GCNGC	3 cut(s)	240, 444, 510
FokI	GGATG	1 cut(s)	770
FriOI	GRGCYC	1 cut(s)	543
Fsp4HI	GCNGC	3 cut(s)	240, 444, 510
FspBI	CTAG	2 cut(s)	524, 563
GluI	GCNGC	3 cut(s)	240, 444, 510
HaeIII	GGCC	1 cut(s)	69
Hin1II	CATG	5 cut(s)	20, 352, 452, 470, 622
HincII	GTYRAC	1 cut(s)	417
HindII	GTYRAC	1 cut(s)	417
HinfI	GANTC	3 cut(s)	286, 330, 622
HphI	GGTGA	2 cut(s)	53, 407
Hpy166II	GTNNAC	4 cut(s)	163, 280, 417, 648
Hpy188I	TCNGA	3 cut(s)	181, 325, 664
Hpy188III	TCNNGA	4 cut(s)	247, 349, 524, 701
Hpy8I	GTNNAC	4 cut(s)	163, 280, 417, 648
HpyCH4III	ACNGT	2 cut(s)	224, 497
HpyCH4IV	ACGT	2 cut(s)	295, 594
HpyCH4V	TGCA	7 cut(s)	4, 54, 197, 242, 275, 443, 512
HpyF10VI	GCNNNNNNNGC	2 cut(s)	440, 568
HpyF3I	CTNAG	5 cut(s)	178, 324, 359, 454, 483
HpySE526I	ACGT	2 cut(s)	295, 594
Hsp92II	CATG	5 cut(s)	20, 352, 452, 470, 622
KpnI	GGTACC	1 cut(s)	618
Ksp22I	TGATCA	1 cut(s)	772
Kzo9I	GATC	1 cut(s)	772
Lsp1109I	GCAGC	3 cut(s)	226, 455, 496
MabI	ACCWGGT	1 cut(s)	391
MaeI	CTAG	2 cut(s)	524, 563
MaeII	ACGT	2 cut(s)	295, 594
MaeIII	GTNAC	5 cut(s)	34, 497, 595, 709, 779
MalI	GATC	1 cut(s)	774
MboI	GATC	1 cut(s)	772
MboII	GAAGA	7 cut(s)	56, 90, 168, 512, 755, 758, 761
MhlI	GDGCHC	1 cut(s)	543
MlsI	TGGCCA	1 cut(s)	69
MluCI	AATT	6 cut(s)	57, 96, 135, 264, 532, 795
MluNI	TGGCCA	1 cut(s)	69
MlyI	GAGTC	1 cut(s)	631
MnlI	CCTC	4 cut(s)	185, 229, 745, 748
Mox20I	TGGCCA	1 cut(s)	69
MroXI	GAANNNNTTC	1 cut(s)	82
MscI	TGGCCA	1 cut(s)	69
MseI	TTAA	5 cut(s)	74, 386, 503, 794, 814
MslI	CAYNNNNRTG	1 cut(s)	605
Msp20I	TGGCCA	1 cut(s)	69
MspR9I	CCNGG	2 cut(s)	228, 393
Mva1269I	GAATGC	1 cut(s)	242
MvaI	CCWGG	2 cut(s)	228, 393
MwoI	GCNNNNNNNGC	2 cut(s)	440, 568
NcoI	CCATGG	1 cut(s)	448
NdeII	GATC	1 cut(s)	772
NheI	GCTAGC	1 cut(s)	562
NlaIII	CATG	5 cut(s)	20, 352, 452, 470, 622
NlaIV	GGNNCC	1 cut(s)	616
NmeAIII	GCCGAG	1 cut(s)	718
NmuCI	GTSAC	2 cut(s)	497, 709
OliI	CACNNNNGTG	1 cut(s)	605
PagI	TCATGA	1 cut(s)	348
PctI	GAATGC	1 cut(s)	242
PdmI	GAANNNNTTC	1 cut(s)	82
PfeI	GAWTC	2 cut(s)	286, 330
PkrI	GCNGC	3 cut(s)	241, 445, 511
PleI	GAGTC	1 cut(s)	630
PpsI	GAGTC	1 cut(s)	630
PsiI	TTATAA	1 cut(s)	219
Psp6I	CCWGG	2 cut(s)	226, 391
PspGI	CCWGG	2 cut(s)	226, 391
PspN4I	GGNNCC	1 cut(s)	616
RsaI	GTAC	4 cut(s)	258, 313, 616, 791
RsaNI	GTAC	4 cut(s)	257, 312, 615, 790
RseI	CAYNNNNRTG	1 cut(s)	605
SaqAI	TTAA	5 cut(s)	74, 386, 503, 794, 814
SatI	GCNGC	3 cut(s)	240, 444, 510
Sau3AI	GATC	1 cut(s)	772
SchI	GAGTC	1 cut(s)	631
ScrFI	CCNGG	2 cut(s)	228, 393
SduI	GDGCHC	1 cut(s)	543
SetI	ASST	8 cut(s)	43, 105, 172, 195, 298, 394, 573, 597
SexAI	ACCWGGT	1 cut(s)	391
SfcI	CTRYAG	2 cut(s)	108, 726
SmiMI	CAYNNNNRTG	1 cut(s)	605
SmlI	CTYRAG	3 cut(s)	247, 376, 603
SmoI	CTYRAG	3 cut(s)	247, 376, 603
Sse9I	AATT	6 cut(s)	57, 96, 135, 264, 532, 795
SsiI	CCGC	1 cut(s)	787
SspI	AATATT	1 cut(s)	641
SspMI	CTAG	2 cut(s)	524, 563
StyD4I	CCNGG	2 cut(s)	226, 391
StyI	CCWWGG	1 cut(s)	448
TaaI	ACNGT	2 cut(s)	224, 497
TaiI	ACGT	2 cut(s)	298, 597
TaqI	TCGA	2 cut(s)	120, 702
TasI	AATT	6 cut(s)	57, 96, 135, 264, 532, 795
TatI	WGTACW	2 cut(s)	256, 311
TfiI	GAWTC	2 cut(s)	286, 330
Tru1I	TTAA	5 cut(s)	74, 386, 503, 794, 814
Tru9I	TTAA	5 cut(s)	74, 386, 503, 794, 814
TscAI	CASTG	3 cut(s)	204, 655, 718
TseFI	GTSAC	2 cut(s)	497, 709
TseI	GCWGC	3 cut(s)	239, 443, 509
Tsp45I	GTSAC	2 cut(s)	497, 709
TspDTI	ATGAA	4 cut(s)	138, 309, 337, 365
TspRI	CASTG	3 cut(s)	204, 655, 718
XapI	RAATTY	2 cut(s)	57, 96
XbaI	TCTAGA	1 cut(s)	523
XmnI	GAANNNNTTC	1 cut(s)	82
XspI	CTAG	2 cut(s)	524, 563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.