Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0007085

Physical Location & Seq

Genomic Coordinates Forward (+)

3963543 .. 3964151

Gene Structure 609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G034600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGCTGAAGGTTTGAAGGACGACGCCAAACCCCATCTAATCTTCACCTACGGCACACTCAAACAAGGCTTCCACAACCACAAGCTAACGCAGGACCTTATCAATCACGACGACGCCGTTTTGTTAGGCCCCTACATCACCCGCCATTCTTACCCGCTCGTCTGTGGACCCTACGGAATCCCCTACCTGATCAACCTCCCCGGGTCCGGTCACCAGGTCAAGGGCGAGCTCTACTCCGTGTCGACCCGAGGACTCGCTCGACTCGACGAATTGGAGGGCACGAGCATCGGGCACTACGAGCGGCTACCTGTTGATGTGATGAATGCCGACGACGACATCGTTTCGGTGGAGGCTCAGGCGTATTACGCGCACAGAAGCTTTGGGCCTGCGATGTGGGAGAGAATTGGGAAGGCGGGTTTGAGTGAGTTCACGGAGAAGGAGGCCAAAGGGTACGTGAAAAGACAAGATAGGCCTTGCCAGGGTCGCGCCATTCTTGAGGACGTCCGGCATTTTGTGTCCGGAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GGACT

Protein Analysis

176

Amino Acids

19.56

Weight (kDa)

6.12

Isoelectric Point (pI)

26.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46720
fragaria_vesca	FvH4_5g22190
malus_domestica	MD16G1273600.v1.1
prunus_persica	Prupe.5G034600_v2.0.a1 Prupe.5G034600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0209861 RchiOBHm_Chr7g0209871
rosa_laevigata	RLG00000003083 RLG00000003085
rosa_multiflora	Rmu_sc0003776.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248880 Rroxscaffold_3G00248890
rosa_rugosa	Rorug07G0116500 Rorug07G0116600 Rorug07G0116700
rosa_samantha	Rh7AG250700 Rh7AG250800 Rh7BG244800 Rh7BG244900 Rh7BG245000 Rh7CG266800 Rh7CG266900 Rh7DG256500
rosa_wichuraiana	Rw7G021240 Rw7G021250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	504
AccBSI	CCGCTC	2 cut(s)	157, 301
AccI	GTMKAC	1 cut(s)	242
AccII	CGCG	2 cut(s)	368, 486
AccIII	TCCGGA	1 cut(s)	518
AciI	CCGC	4 cut(s)	142, 155, 301, 413
AcuI	CTGAAG	1 cut(s)	27
AcyI	GRCGYC	3 cut(s)	24, 114, 501
AfaI	GTAC	1 cut(s)	452
AfiI	CCNNNNNNNGG	3 cut(s)	206, 220, 479
AgsI	TTSAA	1 cut(s)	16
AjnI	CCWGG	2 cut(s)	213, 477
AluBI	AGCT	3 cut(s)	85, 229, 378
AluI	AGCT	3 cut(s)	85, 229, 378
Alw21I	GWGCWC	1 cut(s)	231
Ama87I	CYCGRG	2 cut(s)	200, 246
Aor13HI	TCCGGA	1 cut(s)	518
AoxI	GGCC	4 cut(s)	127, 383, 441, 470
AspLEI	GCGC	2 cut(s)	370, 488
AspS9I	GGNCC	5 cut(s)	94, 128, 167, 204, 383
AsuC2I	CCSGG	2 cut(s)	201, 202
AsuHPI	GGTGA	3 cut(s)	37, 130, 203
AvaI	CYCGRG	2 cut(s)	200, 246
AvaII	GGWCC	3 cut(s)	94, 167, 204
BaeGI	GKGCMC	2 cut(s)	281, 294
BanII	GRGCYC	1 cut(s)	231
BauI	CACGAG	1 cut(s)	280
Bbv12I	GWGCWC	1 cut(s)	231
BccI	CCATC	1 cut(s)	42
BceAI	ACGGC	2 cut(s)	67, 101
BcgI	CGANNNNNNTGC	2 cut(s)	268, 302
BciT130I	CCWGG	2 cut(s)	215, 479
BclI	TGATCA	1 cut(s)	189
BcnI	CCSGG	2 cut(s)	201, 202
BisI	GCNGC	1 cut(s)	302
BlsI	GCNGC	1 cut(s)	303
Bme1390I	CCNGG	4 cut(s)	201, 202, 215, 479
Bme18I	GGWCC	3 cut(s)	94, 167, 204
BmeT110I	CYCGRG	2 cut(s)	200, 246
BmgT120I	GGNCC	5 cut(s)	94, 128, 167, 204, 383
BmiI	GGNNCC	3 cut(s)	130, 169, 205
BmrFI	CCNGG	4 cut(s)	201, 202, 215, 479
BmsI	GCATC	1 cut(s)	294
BplI	GAGNNNNNCTC	2 cut(s)	218, 250
Bpu10I	CCTNAGC	1 cut(s)	354
BpuEI	CTTGAG	1 cut(s)	515
BpuMI	CCSGG	2 cut(s)	201, 202
BsaAI	YACGTR	1 cut(s)	454
BsaHI	GRCGYC	3 cut(s)	24, 114, 501
BsaJI	CCNNGG	4 cut(s)	199, 200, 247, 478
BsaWI	WCCGGW	2 cut(s)	206, 518
Bsc4I	CCNNNNNNNGG	3 cut(s)	206, 220, 479
BseAI	TCCGGA	1 cut(s)	518
BseBI	CCWGG	2 cut(s)	215, 479
BseDI	CCNNGG	4 cut(s)	199, 200, 247, 478
BseLI	CCNNNNNNNGG	3 cut(s)	206, 220, 479
BseMII	CTCAG	1 cut(s)	368
BseSI	GKGCMC	2 cut(s)	281, 294
Bsh1236I	CGCG	2 cut(s)	368, 486
BshFI	GGCC	4 cut(s)	129, 385, 443, 472
BsiHKAI	GWGCWC	1 cut(s)	231
BsiHKCI	CYCGRG	2 cut(s)	200, 246
BsiSI	CCGG	4 cut(s)	201, 207, 505, 519
BslI	CCNNNNNNNGG	3 cut(s)	206, 220, 479
BsmI	GAATGC	1 cut(s)	328
BsnI	GGCC	4 cut(s)	129, 385, 443, 472
BsoBI	CYCGRG	2 cut(s)	200, 246
Bsp1286I	GDGCHC	3 cut(s)	231, 281, 294
Bsp13I	TCCGGA	1 cut(s)	518
Bsp143I	GATC	1 cut(s)	189
BspACI	CCGC	4 cut(s)	142, 155, 301, 413
BspANI	GGCC	4 cut(s)	129, 385, 443, 472
BspCNI	CTCAG	1 cut(s)	367
BspEI	TCCGGA	1 cut(s)	518
BspFNI	CGCG	2 cut(s)	368, 486
BspLI	GGNNCC	3 cut(s)	130, 169, 205
BsrBI	CCGCTC	2 cut(s)	157, 301
BssECI	CCNNGG	4 cut(s)	199, 200, 247, 478
BssMI	GATC	1 cut(s)	189
BssNI	GRCGYC	3 cut(s)	24, 114, 501
BssSI	CACGAG	1 cut(s)	280
Bst2BI	CACGAG	1 cut(s)	280
Bst2UI	CCWGG	2 cut(s)	215, 479
BstACI	GRCGYC	3 cut(s)	24, 114, 501
BstBAI	YACGTR	1 cut(s)	454
BstC8I	GCNNGC	2 cut(s)	227, 387
BstDEI	CTNAG	1 cut(s)	354
BstEII	GGTNACC	1 cut(s)	209
BstFNI	CGCG	2 cut(s)	368, 486
BstHHI	GCGC	2 cut(s)	370, 488
BstKTI	GATC	1 cut(s)	192
BstMBI	GATC	1 cut(s)	189
BstMWI	GCNNNNNNNGC	3 cut(s)	298, 365, 483
BstNI	CCWGG	2 cut(s)	215, 479
BstPI	GGTNACC	1 cut(s)	209
BstSCI	CCNGG	4 cut(s)	199, 200, 213, 477
BstSLI	GKGCMC	2 cut(s)	281, 294
BstUI	CGCG	2 cut(s)	368, 486
BsuRI	GGCC	4 cut(s)	129, 385, 443, 472
BtgZI	GCGATG	1 cut(s)	404
Cac8I	GCNNGC	2 cut(s)	227, 387
CfoI	GCGC	2 cut(s)	370, 488
Cfr13I	GGNCC	5 cut(s)	94, 128, 167, 204, 383
Cfr9I	CCCGGG	1 cut(s)	200
CseI	GACGC	2 cut(s)	32, 122
CsiI	ACCWGGT	1 cut(s)	213
Csp6I	GTAC	1 cut(s)	451
CviQI	GTAC	1 cut(s)	451
DdeI	CTNAG	1 cut(s)	354
DpnI	GATC	1 cut(s)	191
DpnII	GATC	1 cut(s)	189
Ecl136II	GAGCTC	1 cut(s)	229
Eco147I	AGGCCT	1 cut(s)	472
Eco24I	GRGCYC	1 cut(s)	231
Eco47I	GGWCC	3 cut(s)	94, 167, 204
Eco53kI	GAGCTC	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	27
Eco88I	CYCGRG	2 cut(s)	200, 246
Eco91I	GGTNACC	1 cut(s)	209
EcoICRI	GAGCTC	1 cut(s)	229
EcoO109I	RGGNCCY	2 cut(s)	94, 128
EcoO65I	GGTNACC	1 cut(s)	209
EcoRII	CCWGG	2 cut(s)	213, 477
EcoT38I	GRGCYC	1 cut(s)	231
FauI	CCCGC	3 cut(s)	149, 162, 406
FbaI	TGATCA	1 cut(s)	189
FblI	GTMKAC	1 cut(s)	242
Fnu4HI	GCNGC	1 cut(s)	302
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	1 cut(s)	302
GlaI	GCGC	2 cut(s)	369, 487
GluI	GCNGC	1 cut(s)	302
HaeIII	GGCC	4 cut(s)	129, 385, 443, 472
HapII	CCGG	4 cut(s)	201, 207, 505, 519
HgaI	GACGC	2 cut(s)	32, 122
HhaI	GCGC	2 cut(s)	370, 488
Hin1I	GRCGYC	3 cut(s)	24, 114, 501
Hin6I	GCGC	2 cut(s)	368, 486
HinP1I	GCGC	2 cut(s)	368, 486
HincII	GTYRAC	1 cut(s)	243
HindII	GTYRAC	1 cut(s)	243
HindIII	AAGCTT	1 cut(s)	376
HinfI	GANTC	3 cut(s)	177, 252, 261
HpaII	CCGG	4 cut(s)	201, 207, 505, 519
HphI	GGTGA	3 cut(s)	37, 130, 203
Hpy166II	GTNNAC	3 cut(s)	167, 243, 429
Hpy188III	TCNNGA	3 cut(s)	107, 494, 519
Hpy8I	GTNNAC	3 cut(s)	167, 243, 429
Hpy99I	CGWCG	6 cut(s)	26, 113, 116, 269, 332, 335
HpyAV	CCTTC	3 cut(s)	10, 403, 430
HpyCH4IV	ACGT	2 cut(s)	453, 501
HpyF10VI	GCNNNNNNNGC	3 cut(s)	298, 365, 483
HpyF3I	CTNAG	1 cut(s)	354
HpySE526I	ACGT	2 cut(s)	453, 501
Hsp92I	GRCGYC	3 cut(s)	24, 114, 501
HspAI	GCGC	2 cut(s)	368, 486
Kpn2I	TCCGGA	1 cut(s)	518
Ksp22I	TGATCA	1 cut(s)	189
Kzo9I	GATC	1 cut(s)	189
LweI	GCATC	1 cut(s)	294
MabI	ACCWGGT	1 cut(s)	213
MaeII	ACGT	2 cut(s)	453, 501
MaeIII	GTNAC	1 cut(s)	209
MalI	GATC	1 cut(s)	191
MbiI	CCGCTC	2 cut(s)	157, 301
MboI	GATC	1 cut(s)	189
MboII	GAAGA	1 cut(s)	34
MhlI	GDGCHC	3 cut(s)	231, 281, 294
MluCI	AATT	2 cut(s)	269, 402
MlyI	GAGTC	2 cut(s)	246, 255
MnlI	CCTC	6 cut(s)	206, 242, 268, 343, 433, 490
MroI	TCCGGA	1 cut(s)	518
MspI	CCGG	4 cut(s)	201, 207, 505, 519
MspR9I	CCNGG	4 cut(s)	201, 202, 215, 479
Mva1269I	GAATGC	1 cut(s)	328
MvaI	CCWGG	2 cut(s)	215, 479
MvnI	CGCG	2 cut(s)	368, 486
MwoI	GCNNNNNNNGC	3 cut(s)	298, 365, 483
NciI	CCSGG	2 cut(s)	201, 202
NdeII	GATC	1 cut(s)	189
NlaIV	GGNNCC	3 cut(s)	130, 169, 205
NmuCI	GTSAC	1 cut(s)	209
PceI	AGGCCT	1 cut(s)	472
PcsI	WCGNNNNNNNCGW	4 cut(s)	114, 261, 294, 336
PctI	GAATGC	1 cut(s)	328
PfeI	GAWTC	1 cut(s)	177
PkrI	GCNGC	1 cut(s)	303
PleI	GAGTC	2 cut(s)	246, 255
PpsI	GAGTC	2 cut(s)	246, 255
Ppu21I	YACGTR	1 cut(s)	454
PpuMI	RGGWCCY	1 cut(s)	94
Psp124BI	GAGCTC	1 cut(s)	231
Psp5II	RGGWCCY	1 cut(s)	94
Psp6I	CCWGG	2 cut(s)	213, 477
PspEI	GGTNACC	1 cut(s)	209
PspGI	CCWGG	2 cut(s)	213, 477
PspN4I	GGNNCC	3 cut(s)	130, 169, 205
PspPI	GGNCC	5 cut(s)	94, 128, 167, 204, 383
PspPPI	RGGWCCY	1 cut(s)	94
RsaI	GTAC	1 cut(s)	452
RsaNI	GTAC	1 cut(s)	451
SacI	GAGCTC	1 cut(s)	231
SalI	GTCGAC	1 cut(s)	241
SatI	GCNGC	1 cut(s)	302
Sau3AI	GATC	1 cut(s)	189
Sau96I	GGNCC	5 cut(s)	94, 128, 167, 204, 383
SchI	GAGTC	2 cut(s)	246, 255
ScrFI	CCNGG	4 cut(s)	201, 202, 215, 479
SduI	GDGCHC	3 cut(s)	231, 281, 294
SexAI	ACCWGGT	1 cut(s)	213
SfaNI	GCATC	1 cut(s)	294
SinI	GGWCC	3 cut(s)	94, 167, 204
SmaI	CCCGGG	1 cut(s)	202
SmlI	CTYRAG	1 cut(s)	494
SmoI	CTYRAG	1 cut(s)	494
Sse9I	AATT	2 cut(s)	269, 402
SseBI	AGGCCT	1 cut(s)	472
SsiI	CCGC	4 cut(s)	142, 155, 301, 413
SstI	GAGCTC	1 cut(s)	231
StuI	AGGCCT	1 cut(s)	472
StyD4I	CCNGG	4 cut(s)	199, 200, 213, 477
TaiI	ACGT	2 cut(s)	456, 504
TaqI	TCGA	3 cut(s)	242, 259, 264
TasI	AATT	2 cut(s)	269, 402
TauI	GCSGC	1 cut(s)	304
TfiI	GAWTC	1 cut(s)	177
TseFI	GTSAC	1 cut(s)	209
Tsp45I	GTSAC	1 cut(s)	209
TspDTI	ATGAA	1 cut(s)	335
TspGWI	ACGGA	3 cut(s)	189, 226, 446
TspMI	CCCGGG	1 cut(s)	200
VpaK11BI	GGWCC	3 cut(s)	94, 167, 204
XmaI	CCCGGG	1 cut(s)	200
XmiI	GTMKAC	1 cut(s)	242
ZraI	GACGTC	1 cut(s)	502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.