Rorug07G0116700

Gamma-glutamyl cyclotransferase, AIG2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0007085
Physical Location & Seq
Forward (+)
9083450 .. 9084031
582 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0116700.1

Sequence Viewer

Length: 276 bp
ATGATTGGAAGGGACCCGAAATGTTGGGAGAATCCAAATGAATTCTTCCCTGACAGATTCTTGGACAGCTCAGTTGATTACAAAGGAAATCACTATGAGTTTTTACCTTTGGGGTTATTGAGCTTGCACTTGCTAATCCTATCTATTGTTTTTGACTGGGAACTGCCTCACGGGGTGAAAAGAGAAGACTTGGACATGAAAGAAGCTGTTGGACGTACAGTGCAAAAGAAAGTTCATTTATGTCTAGCTGCTACCCCTTCTGATATGATCGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GGACT

Protein Analysis

91

Amino Acids

10.5

Weight (kDa)

5.43

Isoelectric Point (pI)

29.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 2 - 38 3e-07 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 41
AdeI CACNNNGTG 1 cut(s) 175
AfaI GTAC 1 cut(s) 217
AluBI AGCT 4 cut(s) 69, 123, 206, 248
AluI AGCT 4 cut(s) 69, 123, 206, 248
ApeKI GCWGC 1 cut(s) 248
ApoI RAATTY 1 cut(s) 41
AspS9I GGNCC 1 cut(s) 13
AsuHPI GGTGA 1 cut(s) 187
AvaII GGWCC 1 cut(s) 13
BbsI GAAGAC 1 cut(s) 192
BbvI GCAGC 1 cut(s) 235
BfaI CTAG 1 cut(s) 245
BisI GCNGC 1 cut(s) 249
BlsI GCNGC 1 cut(s) 250
Bme18I GGWCC 1 cut(s) 13
BmgT120I GGNCC 1 cut(s) 13
BmiI GGNNCC 2 cut(s) 14, 15
BmrI ACTGGG 1 cut(s) 166
BmuI ACTGGG 1 cut(s) 166
BpiI GAAGAC 1 cut(s) 192
Bse1I ACTGG 1 cut(s) 161
BseMII CTCAG 1 cut(s) 84
BseNI ACTGG 1 cut(s) 161
BseXI GCAGC 1 cut(s) 235
BslFI GGGAC 1 cut(s) 26
BsmFI GGGAC 1 cut(s) 26
Bsp143I GATC 1 cut(s) 267
BspCNI CTCAG 1 cut(s) 83
BspLI GGNNCC 2 cut(s) 14, 15
BsrI ACTGG 1 cut(s) 161
BssMI GATC 1 cut(s) 267
Bst4CI ACNGT 1 cut(s) 220
BstC8I GCNNGC 1 cut(s) 125
BstDEI CTNAG 1 cut(s) 70
BstKTI GATC 1 cut(s) 270
BstMBI GATC 1 cut(s) 267
BstV1I GCAGC 1 cut(s) 235
BstV2I GAAGAC 1 cut(s) 192
BtsIMutI CAGTG 1 cut(s) 225
Cac8I GCNNGC 1 cut(s) 125
Cfr13I GGNCC 1 cut(s) 13
Csp6I GTAC 1 cut(s) 216
CviAII CATG 1 cut(s) 196
CviJI RGCY 4 cut(s) 69, 123, 206, 248
CviKI_1 RGCY 4 cut(s) 69, 123, 206, 248
CviQI GTAC 1 cut(s) 216
DdeI CTNAG 1 cut(s) 70
DpnI GATC 1 cut(s) 269
DpnII GATC 1 cut(s) 267
DraIII CACNNNGTG 1 cut(s) 175
Eco47I GGWCC 1 cut(s) 13
EcoO109I RGGNCCY 1 cut(s) 13
EcoRI GAATTC 1 cut(s) 41
FaeI CATG 1 cut(s) 199
FaiI YATR 5 cut(s) 96, 197, 241, 266, 274
FaqI GGGAC 1 cut(s) 26
FatI CATG 1 cut(s) 195
Fnu4HI GCNGC 1 cut(s) 249
Fsp4HI GCNGC 1 cut(s) 249
FspBI CTAG 1 cut(s) 245
GluI GCNGC 1 cut(s) 249
Hin1II CATG 1 cut(s) 199
HinfI GANTC 2 cut(s) 31, 57
HphI GGTGA 1 cut(s) 187
Hpy188I TCNGA 1 cut(s) 262
HpyAV CCTTC 2 cut(s) 3, 267
HpyCH4III ACNGT 1 cut(s) 220
HpyCH4IV ACGT 1 cut(s) 214
HpyCH4V TGCA 2 cut(s) 127, 223
HpyF3I CTNAG 1 cut(s) 70
HpySE526I ACGT 1 cut(s) 214
Hsp92II CATG 1 cut(s) 199
KflI GGGWCCC 1 cut(s) 13
Kzo9I GATC 1 cut(s) 267
LpnPI CCDG 2 cut(s) 63, 142
Lsp1109I GCAGC 1 cut(s) 235
MaeI CTAG 1 cut(s) 245
MaeII ACGT 1 cut(s) 214
MalI GATC 1 cut(s) 269
MboI GATC 1 cut(s) 267
MboII GAAGA 2 cut(s) 37, 197
MluCI AATT 1 cut(s) 41
MmeI TCCRAC 1 cut(s) 190
MnlI CCTC 1 cut(s) 177
NdeII GATC 1 cut(s) 267
NlaIII CATG 1 cut(s) 199
NlaIV GGNNCC 2 cut(s) 14, 15
PfeI GAWTC 2 cut(s) 31, 57
PkrI GCNGC 1 cut(s) 250
PpuMI RGGWCCY 1 cut(s) 13
Psp5II RGGWCCY 1 cut(s) 13
PspN4I GGNNCC 2 cut(s) 14, 15
PspPI GGNCC 1 cut(s) 13
PspPPI RGGWCCY 1 cut(s) 13
RsaI GTAC 1 cut(s) 217
RsaNI GTAC 1 cut(s) 216
SatI GCNGC 1 cut(s) 249
Sau3AI GATC 1 cut(s) 267
Sau96I GGNCC 1 cut(s) 13
SetI ASST 6 cut(s) 71, 109, 125, 208, 217, 250
SinI GGWCC 1 cut(s) 13
Sse9I AATT 1 cut(s) 41
SspMI CTAG 1 cut(s) 245
TaaI ACNGT 1 cut(s) 220
TaiI ACGT 1 cut(s) 217
TasI AATT 1 cut(s) 41
TfiI GAWTC 2 cut(s) 31, 57
TscAI CASTG 1 cut(s) 225
TseI GCWGC 1 cut(s) 248
TspDTI ATGAA 3 cut(s) 54, 212, 224
TspRI CASTG 1 cut(s) 225
VpaK11BI GGWCC 1 cut(s) 13
XapI RAATTY 1 cut(s) 41
XspI CTAG 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.