Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003776.1

Orthogroup ID

OG0007085

Physical Location & Seq

Genomic Coordinates Reverse (-)

896 .. 1429

Gene Structure 534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003776.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

atggctaacatttccggcgacgcatccaaaccccacctcatcttctcctacggcacactcaagcgaggcttccacaaccacaagctgaccaaggaattaattgaccaagacgacgccgttttcatgggcccctatattaccctccacacccaccccctcgtctgcggcccccacggccttccctacctcatcaacctccccgggtcgggtcacccgatcaggggcgagctctacgccgtttcgacccggggactcgcccggttcgacgagctggaatgcacctccatcgggcactacgagcggctcccggtacaattgacggtcaatgcggacagagacgacgtcgttccggtcgaggccgaggcctatttcgcgcacagaagcttcggggaggccatgtgggagaggaacgggaaggagggtttgagcgagttcacagagaatgaggcgaaacggtacgtgaaaagacaggataggcctcatcagggtcgcaatattctcgaggacgtccggcattttgtcaacggagagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GGACT

Protein Analysis

177

Amino Acids

20.05

Weight (kDa)

6.11

Isoelectric Point (pI)

40.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46720
fragaria_vesca	FvH4_5g22190
malus_domestica	MD16G1273600.v1.1
prunus_persica	Prupe.5G034600_v2.0.a1 Prupe.5G034600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0209861 RchiOBHm_Chr7g0209871
rosa_laevigata	RLG00000003083 RLG00000003085
rosa_multiflora	Rmu_sc0003776.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248880 Rroxscaffold_3G00248890
rosa_rugosa	Rorug07G0116500 Rorug07G0116600 Rorug07G0116700
rosa_samantha	Rh7AG250700 Rh7AG250800 Rh7BG244800 Rh7BG244900 Rh7BG245000 Rh7CG266800 Rh7CG266900 Rh7DG256500
rosa_wichuraiana	Rw7G021240 Rw7G021250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	345, 510
AccBSI	CCGCTC	1 cut(s)	301
AccII	CGCG	1 cut(s)	374
AciI	CCGC	3 cut(s)	165, 301, 329
AcyI	GRCGYC	3 cut(s)	114, 342, 507
AfaI	GTAC	2 cut(s)	312, 458
AfiI	CCNNNNNNNGG	6 cut(s)	205, 206, 220, 221, 288, 485
AluBI	AGCT	4 cut(s)	85, 229, 271, 384
AluI	AGCT	4 cut(s)	85, 229, 271, 384
Alw21I	GWGCWC	1 cut(s)	231
Alw26I	GTCTC	1 cut(s)	330
Ama87I	CYCGRG	3 cut(s)	200, 246, 500
AoxI	GGCC	7 cut(s)	127, 166, 175, 357, 363, 393, 476
ApaI	GGGCCC	1 cut(s)	131
AseI	ATTAAT	1 cut(s)	98
AspLEI	GCGC	1 cut(s)	376
AspS9I	GGNCC	3 cut(s)	127, 128, 167
AsuC2I	CCSGG	6 cut(s)	201, 202, 247, 248, 259, 308
AsuHPI	GGTGA	1 cut(s)	203
AvaI	CYCGRG	3 cut(s)	200, 246, 500
BaeGI	GKGCMC	2 cut(s)	131, 294
BanII	GRGCYC	2 cut(s)	131, 231
Bbv12I	GWGCWC	1 cut(s)	231
BccI	CCATC	1 cut(s)	293
BceAI	ACGGC	4 cut(s)	67, 101, 190, 221
BcgI	CGANNNNNNTGC	4 cut(s)	268, 302, 481, 515
BcnI	CCSGG	6 cut(s)	201, 202, 247, 248, 259, 308
BcoDI	GTCTC	1 cut(s)	330
BglI	GCCNNNNNGGC	1 cut(s)	174
BisI	GCNGC	2 cut(s)	166, 302
BlsI	GCNGC	2 cut(s)	167, 303
Bme1390I	CCNGG	6 cut(s)	201, 202, 247, 248, 259, 308
BmeT110I	CYCGRG	3 cut(s)	200, 246, 500
BmgT120I	GGNCC	3 cut(s)	127, 128, 167
BmiI	GGNNCC	4 cut(s)	129, 130, 169, 305
BmrFI	CCNGG	6 cut(s)	201, 202, 247, 248, 259, 308
BmsI	GCATC	1 cut(s)	32
BpuEI	CTTGAG	1 cut(s)	44
BpuMI	CCSGG	6 cut(s)	201, 202, 247, 248, 259, 308
BsaAI	YACGTR	1 cut(s)	460
BsaHI	GRCGYC	3 cut(s)	114, 342, 507
BsaJI	CCNNGG	7 cut(s)	90, 172, 199, 200, 246, 247, 360
BsaWI	WCCGGW	1 cut(s)	349
BsaXI	ACNNNNNCTCC	2 cut(s)	383, 413
Bsc4I	CCNNNNNNNGG	6 cut(s)	205, 206, 220, 221, 288, 485
BseDI	CCNNGG	7 cut(s)	90, 172, 199, 200, 246, 247, 360
BseGI	GGATG	1 cut(s)	23
BseLI	CCNNNNNNNGG	6 cut(s)	205, 206, 220, 221, 288, 485
BseSI	GKGCMC	2 cut(s)	131, 294
Bsh1236I	CGCG	1 cut(s)	374
Bsh1285I	CGRYCG	1 cut(s)	354
BshFI	GGCC	7 cut(s)	129, 168, 177, 359, 365, 395, 478
BsiEI	CGRYCG	1 cut(s)	354
BsiHKAI	GWGCWC	1 cut(s)	231
BsiHKCI	CYCGRG	3 cut(s)	200, 246, 500
BsiSI	CCGG	7 cut(s)	15, 201, 247, 259, 308, 350, 511
BslFI	GGGAC	1 cut(s)	264
BslI	CCNNNNNNNGG	6 cut(s)	205, 206, 220, 221, 288, 485
BsmAI	GTCTC	1 cut(s)	330
BsmBI	CGTCTC	1 cut(s)	330
BsmFI	GGGAC	1 cut(s)	264
BsmI	GAATGC	1 cut(s)	281
BsnI	GGCC	7 cut(s)	129, 168, 177, 359, 365, 395, 478
BsoBI	CYCGRG	3 cut(s)	200, 246, 500
Bsp120I	GGGCCC	1 cut(s)	127
Bsp1286I	GDGCHC	3 cut(s)	131, 231, 294
Bsp143I	GATC	1 cut(s)	216
BspACI	CCGC	3 cut(s)	165, 301, 329
BspANI	GGCC	7 cut(s)	129, 168, 177, 359, 365, 395, 478
BspFNI	CGCG	1 cut(s)	374
BspLI	GGNNCC	4 cut(s)	129, 130, 169, 305
BsrBI	CCGCTC	1 cut(s)	301
BssECI	CCNNGG	7 cut(s)	90, 172, 199, 200, 246, 247, 360
BssMI	GATC	1 cut(s)	216
BssNI	GRCGYC	3 cut(s)	114, 342, 507
BssT1I	CCWWGG	1 cut(s)	90
Bst4CI	ACNGT	2 cut(s)	322, 456
BstACI	GRCGYC	3 cut(s)	114, 342, 507
BstBAI	YACGTR	1 cut(s)	460
BstC8I	GCNNGC	1 cut(s)	227
BstDSI	CCRYGG	1 cut(s)	172
BstEII	GGTNACC	1 cut(s)	209
BstF5I	GGATG	1 cut(s)	23
BstFNI	CGCG	1 cut(s)	374
BstHHI	GCGC	1 cut(s)	376
BstKTI	GATC	1 cut(s)	219
BstMAI	GTCTC	1 cut(s)	330
BstMBI	GATC	1 cut(s)	216
BstMCI	CGRYCG	1 cut(s)	354
BstMWI	GCNNNNNNNGC	3 cut(s)	174, 298, 371
BstPI	GGTNACC	1 cut(s)	209
BstSCI	CCNGG	6 cut(s)	199, 200, 245, 246, 257, 306
BstSLI	GKGCMC	2 cut(s)	131, 294
BstUI	CGCG	1 cut(s)	374
BsuRI	GGCC	7 cut(s)	129, 168, 177, 359, 365, 395, 478
BtgI	CCRYGG	1 cut(s)	172
BtsCI	GGATG	1 cut(s)	23
Cac8I	GCNNGC	1 cut(s)	227
CfoI	GCGC	1 cut(s)	376
Cfr13I	GGNCC	3 cut(s)	127, 128, 167
Cfr9I	CCCGGG	2 cut(s)	200, 246
CseI	GACGC	2 cut(s)	29, 122
Csp6I	GTAC	2 cut(s)	311, 457
CviAII	CATG	2 cut(s)	124, 397
CviQI	GTAC	2 cut(s)	311, 457
DpnI	GATC	1 cut(s)	218
DpnII	GATC	1 cut(s)	216
Ecl136II	GAGCTC	1 cut(s)	229
Eco130I	CCWWGG	1 cut(s)	90
Eco147I	AGGCCT	2 cut(s)	365, 478
Eco24I	GRGCYC	2 cut(s)	131, 231
Eco53kI	GAGCTC	1 cut(s)	229
Eco88I	CYCGRG	3 cut(s)	200, 246, 500
Eco91I	GGTNACC	1 cut(s)	209
EcoICRI	GAGCTC	1 cut(s)	229
EcoO109I	RGGNCCY	1 cut(s)	128
EcoO65I	GGTNACC	1 cut(s)	209
EcoT14I	CCWWGG	1 cut(s)	90
EcoT38I	GRGCYC	2 cut(s)	131, 231
ErhI	CCWWGG	1 cut(s)	90
Esp3I	CGTCTC	1 cut(s)	330
FaeI	CATG	2 cut(s)	127, 400
FaiI	YATR	3 cut(s)	125, 135, 398
FalI	AAGNNNNNCTT	2 cut(s)	53, 85
FaqI	GGGAC	1 cut(s)	264
FatI	CATG	2 cut(s)	123, 396
Fnu4HI	GCNGC	2 cut(s)	166, 302
FokI	GGATG	1 cut(s)	10
FriOI	GRGCYC	2 cut(s)	131, 231
Fsp4HI	GCNGC	2 cut(s)	166, 302
GlaI	GCGC	1 cut(s)	375
GluI	GCNGC	2 cut(s)	166, 302
HaeIII	GGCC	7 cut(s)	129, 168, 177, 359, 365, 395, 478
HapII	CCGG	7 cut(s)	15, 201, 247, 259, 308, 350, 511
HgaI	GACGC	2 cut(s)	29, 122
HhaI	GCGC	1 cut(s)	376
Hin1I	GRCGYC	3 cut(s)	114, 342, 507
Hin1II	CATG	2 cut(s)	127, 400
Hin6I	GCGC	1 cut(s)	374
HinP1I	GCGC	1 cut(s)	374
HincII	GTYRAC	1 cut(s)	523
HindII	GTYRAC	1 cut(s)	523
HindIII	AAGCTT	1 cut(s)	382
HinfI	GANTC	1 cut(s)	252
HpaII	CCGG	7 cut(s)	15, 201, 247, 259, 308, 350, 511
HphI	GGTGA	1 cut(s)	203
Hpy166II	GTNNAC	2 cut(s)	435, 523
Hpy188III	TCNNGA	1 cut(s)	500
Hpy8I	GTNNAC	2 cut(s)	435, 523
Hpy99I	CGWCG	5 cut(s)	23, 116, 269, 344, 347
HpyAV	CCTTC	2 cut(s)	188, 409
HpyCH4III	ACNGT	2 cut(s)	322, 456
HpyCH4IV	ACGT	3 cut(s)	342, 459, 507
HpyCH4V	TGCA	1 cut(s)	279
HpyF10VI	GCNNNNNNNGC	3 cut(s)	174, 298, 371
HpySE526I	ACGT	3 cut(s)	342, 459, 507
Hsp92I	GRCGYC	3 cut(s)	114, 342, 507
Hsp92II	CATG	2 cut(s)	127, 400
HspAI	GCGC	1 cut(s)	374
Kzo9I	GATC	1 cut(s)	216
LmnI	GCTCC	1 cut(s)	309
LweI	GCATC	1 cut(s)	32
MaeII	ACGT	3 cut(s)	342, 459, 507
MaeIII	GTNAC	1 cut(s)	209
MalI	GATC	1 cut(s)	218
MbiI	CCGCTC	1 cut(s)	301
MboI	GATC	1 cut(s)	216
MboII	GAAGA	1 cut(s)	34
MfeI	CAATTG	1 cut(s)	314
MhlI	GDGCHC	3 cut(s)	131, 231, 294
MluCI	AATT	3 cut(s)	95, 99, 314
MlyI	GAGTC	1 cut(s)	246
MseI	TTAA	1 cut(s)	98
MspI	CCGG	7 cut(s)	15, 201, 247, 259, 308, 350, 511
MspR9I	CCNGG	6 cut(s)	201, 202, 247, 248, 259, 308
MunI	CAATTG	1 cut(s)	314
Mva1269I	GAATGC	1 cut(s)	281
MvnI	CGCG	1 cut(s)	374
MwoI	GCNNNNNNNGC	3 cut(s)	174, 298, 371
NciI	CCSGG	6 cut(s)	201, 202, 247, 248, 259, 308
NdeII	GATC	1 cut(s)	216
NlaIII	CATG	2 cut(s)	127, 400
NlaIV	GGNNCC	4 cut(s)	129, 130, 169, 305
NmeAIII	GCCGAG	1 cut(s)	385
NmuCI	GTSAC	1 cut(s)	209
PaeR7I	CTCGAG	1 cut(s)	500
PceI	AGGCCT	2 cut(s)	365, 478
PcsI	WCGNNNNNNNCGW	4 cut(s)	212, 261, 294, 351
PctI	GAATGC	1 cut(s)	281
PflFI	GACNNNGTC	1 cut(s)	341
PkrI	GCNGC	2 cut(s)	167, 303
PleI	GAGTC	1 cut(s)	246
PpsI	GAGTC	1 cut(s)	246
Ppu21I	YACGTR	1 cut(s)	460
PshBI	ATTAAT	1 cut(s)	98
Psp124BI	GAGCTC	1 cut(s)	231
PspEI	GGTNACC	1 cut(s)	209
PspN4I	GGNNCC	4 cut(s)	129, 130, 169, 305
PspOMI	GGGCCC	1 cut(s)	127
PspPI	GGNCC	3 cut(s)	127, 128, 167
PsyI	GACNNNGTC	1 cut(s)	341
RsaI	GTAC	2 cut(s)	312, 458
RsaNI	GTAC	2 cut(s)	311, 457
SacI	GAGCTC	1 cut(s)	231
SaqAI	TTAA	1 cut(s)	98
SatI	GCNGC	2 cut(s)	166, 302
Sau3AI	GATC	1 cut(s)	216
Sau96I	GGNCC	3 cut(s)	127, 128, 167
SchI	GAGTC	1 cut(s)	246
ScrFI	CCNGG	6 cut(s)	201, 202, 247, 248, 259, 308
SduI	GDGCHC	3 cut(s)	131, 231, 294
SfaNI	GCATC	1 cut(s)	32
SfiI	GGCCNNNNNGGCC	1 cut(s)	174
Sfr274I	CTCGAG	1 cut(s)	500
SlaI	CTCGAG	1 cut(s)	500
SmaI	CCCGGG	2 cut(s)	202, 248
SmlI	CTYRAG	2 cut(s)	59, 500
SmoI	CTYRAG	2 cut(s)	59, 500
Sse9I	AATT	3 cut(s)	95, 99, 314
SseBI	AGGCCT	2 cut(s)	365, 478
SsiI	CCGC	3 cut(s)	165, 301, 329
SspI	AATATT	1 cut(s)	496
SstI	GAGCTC	1 cut(s)	231
StuI	AGGCCT	2 cut(s)	365, 478
StyD4I	CCNGG	6 cut(s)	199, 200, 245, 246, 257, 306
StyI	CCWWGG	1 cut(s)	90
TaaI	ACNGT	2 cut(s)	322, 456
TaiI	ACGT	3 cut(s)	345, 462, 510
TaqI	TCGA	4 cut(s)	242, 264, 354, 501
TasI	AATT	3 cut(s)	95, 99, 314
TauI	GCSGC	2 cut(s)	168, 304
Tru1I	TTAA	1 cut(s)	98
Tru9I	TTAA	1 cut(s)	98
TseFI	GTSAC	1 cut(s)	209
Tsp45I	GTSAC	1 cut(s)	209
TspDTI	ATGAA	1 cut(s)	112
TspMI	CCCGGG	2 cut(s)	200, 246
Tth111I	GACNNNGTC	1 cut(s)	341
VspI	ATTAAT	1 cut(s)	98
XhoI	CTCGAG	1 cut(s)	500
XmaI	CCCGGG	2 cut(s)	200, 246
ZraI	GACGTC	2 cut(s)	343, 508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.