Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0007085

Physical Location & Seq

Genomic Coordinates Forward (+)

42352491 .. 42353240

Gene Structure 750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00248880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGGACCTCTGATTCTGTGCCCCCCCCGCCTCCTCAAAACGACAGACATACCCCATCCTGGAGAGCTCGCCCGGTTCGACGAGCTGGAAGGCACCTCGGTCGGGCACTACGAGCGGCTCCCGGTTCAGTTGGCGGTCAATGAGGACAAGGACGGCGTCGTTCCAGTGGAGGCCGAGGCCTATTTCGCTCACAGAAGCTTCGGTGAGGCCATGTGGGCGGGGATGGGAAAGGAGGGTTTGAGCGAGTTCACGGAGAACGAGGGGAAAAGGTACGCGAAAATACAGGATAGGCCTCATCCGCGTCGCAGTATTCTTGAGGACGTGCGGCATTTTGTGAATGGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GGACT

Protein Analysis

115

Amino Acids

12.95

Weight (kDa)

5.71

Isoelectric Point (pI)

41.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46720
fragaria_vesca	FvH4_5g22190
malus_domestica	MD16G1273600.v1.1
prunus_persica	Prupe.5G034600_v2.0.a1 Prupe.5G034600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0209861 RchiOBHm_Chr7g0209871
rosa_laevigata	RLG00000003083 RLG00000003085
rosa_multiflora	Rmu_sc0003776.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248880 Rroxscaffold_3G00248890
rosa_rugosa	Rorug07G0116500 Rorug07G0116600 Rorug07G0116700
rosa_samantha	Rh7AG250700 Rh7AG250800 Rh7BG244800 Rh7BG244900 Rh7BG245000 Rh7CG266800 Rh7CG266900 Rh7DG256500
rosa_wichuraiana	Rw7G021240 Rw7G021250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	92
AccBSI	CCGCTC	1 cut(s)	115
AccII	CGCG	2 cut(s)	275, 301
AciI	CCGC	6 cut(s)	28, 115, 134, 218, 299, 325
AcyI	GRCGYC	1 cut(s)	156
AfaI	GTAC	1 cut(s)	272
AfiI	CCNNNNNNNGG	2 cut(s)	59, 102
AjiI	CACGTC	1 cut(s)	322
AjnI	CCWGG	1 cut(s)	58
AluBI	AGCT	3 cut(s)	67, 85, 198
AluI	AGCT	3 cut(s)	67, 85, 198
Alw21I	GWGCWC	1 cut(s)	69
AoxI	GGCC	4 cut(s)	171, 177, 207, 290
AspS9I	GGNCC	1 cut(s)	5
AsuC2I	CCSGG	2 cut(s)	73, 122
AsuHPI	GGTGA	1 cut(s)	215
AvaII	GGWCC	1 cut(s)	5
BaeGI	GKGCMC	2 cut(s)	23, 108
BanI	GGYRCC	1 cut(s)	92
BanII	GRGCYC	1 cut(s)	69
Bbv12I	GWGCWC	1 cut(s)	69
BccI	CCATC	2 cut(s)	63, 217
BceAI	ACGGC	1 cut(s)	169
BcgI	CGANNNNNNTGC	2 cut(s)	82, 116
BciT130I	CCWGG	1 cut(s)	60
BcnI	CCSGG	2 cut(s)	73, 122
BglI	GCCNNNNNGGC	1 cut(s)	215
BisI	GCNGC	2 cut(s)	116, 326
BlsI	GCNGC	2 cut(s)	117, 327
Bme1390I	CCNGG	3 cut(s)	60, 73, 122
Bme18I	GGWCC	1 cut(s)	5
BmgBI	CACGTC	1 cut(s)	322
BmgT120I	GGNCC	1 cut(s)	5
BmiI	GGNNCC	3 cut(s)	6, 94, 119
BmrFI	CCNGG	3 cut(s)	60, 73, 122
BpmI	CTGGAG	1 cut(s)	81
BpuEI	CTTGAG	1 cut(s)	335
BpuMI	CCSGG	2 cut(s)	73, 122
BsaHI	GRCGYC	1 cut(s)	156
BsaJI	CCNNGG	2 cut(s)	96, 174
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 102
Bse1I	ACTGG	1 cut(s)	164
BseBI	CCWGG	1 cut(s)	60
BseDI	CCNNGG	2 cut(s)	96, 174
BseGI	GGATG	3 cut(s)	55, 228, 295
BseLI	CCNNNNNNNGG	2 cut(s)	59, 102
BseNI	ACTGG	1 cut(s)	164
BseRI	GAGGAG	1 cut(s)	23
BseSI	GKGCMC	2 cut(s)	23, 108
Bsh1236I	CGCG	2 cut(s)	275, 301
Bsh1285I	CGRYCG	1 cut(s)	102
BshFI	GGCC	4 cut(s)	173, 179, 209, 292
BshNI	GGYRCC	1 cut(s)	92
BsiEI	CGRYCG	1 cut(s)	102
BsiHKAI	GWGCWC	1 cut(s)	69
BsiSI	CCGG	2 cut(s)	73, 122
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	2 cut(s)	59, 102
BsmFI	GGGAC	1 cut(s)	18
BsnI	GGCC	4 cut(s)	173, 179, 209, 292
Bsp1286I	GDGCHC	3 cut(s)	23, 69, 108
BspACI	CCGC	6 cut(s)	28, 115, 134, 218, 299, 325
BspANI	GGCC	4 cut(s)	173, 179, 209, 292
BspFNI	CGCG	2 cut(s)	275, 301
BspLI	GGNNCC	3 cut(s)	6, 94, 119
BspT107I	GGYRCC	1 cut(s)	92
BsrBI	CCGCTC	1 cut(s)	115
BsrI	ACTGG	1 cut(s)	164
BssECI	CCNNGG	2 cut(s)	96, 174
BssNI	GRCGYC	1 cut(s)	156
Bst2UI	CCWGG	1 cut(s)	60
BstACI	GRCGYC	1 cut(s)	156
BstC8I	GCNNGC	1 cut(s)	69
BstF5I	GGATG	3 cut(s)	55, 228, 295
BstFNI	CGCG	2 cut(s)	275, 301
BstMCI	CGRYCG	1 cut(s)	102
BstMWI	GCNNNNNNNGC	5 cut(s)	27, 112, 185, 215, 298
BstNI	CCWGG	1 cut(s)	60
BstSCI	CCNGG	3 cut(s)	58, 71, 120
BstSLI	GKGCMC	2 cut(s)	23, 108
BstUI	CGCG	2 cut(s)	275, 301
BsuRI	GGCC	4 cut(s)	173, 179, 209, 292
BtrI	CACGTC	1 cut(s)	322
BtsCI	GGATG	3 cut(s)	55, 228, 295
BtsIMutI	CAGTG	1 cut(s)	171
Cac8I	GCNNGC	1 cut(s)	69
Cfr13I	GGNCC	1 cut(s)	5
CseI	GACGC	2 cut(s)	145, 290
Csp6I	GTAC	1 cut(s)	271
CviAII	CATG	1 cut(s)	211
CviJI	RGCY	8 cut(s)	67, 85, 118, 173, 179, 198, 209, 292
CviKI_1	RGCY	8 cut(s)	67, 85, 118, 173, 179, 198, 209, 292
CviQI	GTAC	1 cut(s)	271
Ecl136II	GAGCTC	1 cut(s)	67
Eco147I	AGGCCT	2 cut(s)	179, 292
Eco24I	GRGCYC	1 cut(s)	69
Eco47I	GGWCC	1 cut(s)	5
Eco53kI	GAGCTC	1 cut(s)	67
EcoICRI	GAGCTC	1 cut(s)	67
EcoO109I	RGGNCCY	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	58
EcoT38I	GRGCYC	1 cut(s)	69
FaeI	CATG	1 cut(s)	214
FaiI	YATR	2 cut(s)	50, 212
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	1 cut(s)	210
FauI	CCCGC	2 cut(s)	35, 211
Fnu4HI	GCNGC	2 cut(s)	116, 326
FokI	GGATG	3 cut(s)	42, 235, 282
FriOI	GRGCYC	1 cut(s)	69
Fsp4HI	GCNGC	2 cut(s)	116, 326
GluI	GCNGC	2 cut(s)	116, 326
GsuI	CTGGAG	1 cut(s)	81
HaeIII	GGCC	4 cut(s)	173, 179, 209, 292
HapII	CCGG	2 cut(s)	73, 122
HgaI	GACGC	2 cut(s)	145, 290
Hin1I	GRCGYC	1 cut(s)	156
Hin1II	CATG	1 cut(s)	214
HindIII	AAGCTT	1 cut(s)	196
HinfI	GANTC	1 cut(s)	13
HpaII	CCGG	2 cut(s)	73, 122
HphI	GGTGA	1 cut(s)	215
Hpy166II	GTNNAC	1 cut(s)	249
Hpy188I	TCNGA	1 cut(s)	12
Hpy188III	TCNNGA	1 cut(s)	314
Hpy8I	GTNNAC	1 cut(s)	249
Hpy99I	CGWCG	3 cut(s)	83, 161, 306
HpyAV	CCTTC	1 cut(s)	83
HpyCH4IV	ACGT	1 cut(s)	321
HpyF10VI	GCNNNNNNNGC	5 cut(s)	27, 112, 185, 215, 298
HpySE526I	ACGT	1 cut(s)	321
Hsp92I	GRCGYC	1 cut(s)	156
Hsp92II	CATG	1 cut(s)	214
LmnI	GCTCC	1 cut(s)	123
LpnPI	CCDG	7 cut(s)	45, 71, 72, 86, 135, 177, 269
MaeII	ACGT	1 cut(s)	321
MbiI	CCGCTC	1 cut(s)	115
MhlI	GDGCHC	3 cut(s)	23, 69, 108
MspI	CCGG	2 cut(s)	73, 122
MspR9I	CCNGG	3 cut(s)	60, 73, 122
MvaI	CCWGG	1 cut(s)	60
MvnI	CGCG	2 cut(s)	275, 301
MwoI	GCNNNNNNNGC	5 cut(s)	27, 112, 185, 215, 298
NciI	CCSGG	2 cut(s)	73, 122
NlaIII	CATG	1 cut(s)	214
NlaIV	GGNNCC	3 cut(s)	6, 94, 119
NmeAIII	GCCGAG	1 cut(s)	199
PceI	AGGCCT	2 cut(s)	179, 292
PcsI	WCGNNNNNNNCGW	2 cut(s)	75, 108
PfeI	GAWTC	1 cut(s)	13
PflFI	GACNNNGTC	1 cut(s)	155
PfoI	TCCNGGA	1 cut(s)	58
PkrI	GCNGC	2 cut(s)	117, 327
PpuMI	RGGWCCY	1 cut(s)	5
Psp124BI	GAGCTC	1 cut(s)	69
Psp5II	RGGWCCY	1 cut(s)	5
Psp6I	CCWGG	1 cut(s)	58
PspGI	CCWGG	1 cut(s)	58
PspN4I	GGNNCC	3 cut(s)	6, 94, 119
PspPI	GGNCC	1 cut(s)	5
PspPPI	RGGWCCY	1 cut(s)	5
PsyI	GACNNNGTC	1 cut(s)	155
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
SacI	GAGCTC	1 cut(s)	69
SatI	GCNGC	2 cut(s)	116, 326
Sau96I	GGNCC	1 cut(s)	5
ScrFI	CCNGG	3 cut(s)	60, 73, 122
SduI	GDGCHC	3 cut(s)	23, 69, 108
SetI	ASST	7 cut(s)	10, 69, 87, 98, 200, 272, 324
SinI	GGWCC	1 cut(s)	5
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
SseBI	AGGCCT	2 cut(s)	179, 292
SsiI	CCGC	6 cut(s)	28, 115, 134, 218, 299, 325
SstI	GAGCTC	1 cut(s)	69
StuI	AGGCCT	2 cut(s)	179, 292
StyD4I	CCNGG	3 cut(s)	58, 71, 120
TaiI	ACGT	1 cut(s)	324
TaqI	TCGA	1 cut(s)	78
TaqII	GACCGA	1 cut(s)	88
TauI	GCSGC	2 cut(s)	118, 328
TfiI	GAWTC	1 cut(s)	13
TscAI	CASTG	1 cut(s)	171
TspGWI	ACGGA	1 cut(s)	266
TspRI	CASTG	1 cut(s)	171
Tth111I	GACNNNGTC	1 cut(s)	155
VpaK11BI	GGWCC	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.