RLG00000003083

Gamma-glutamyl cyclotransferase, AIG2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0007085
Physical Location & Seq
Forward (+)
44235650 .. 44241539
5890 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003083

Sequence Viewer

Length: 942 bp
ATGGATGAAACATCCGGCGACGATGCCAAACCTCACCTAGTCATCTTCTGCTACGGCACACTCAAGCAAGGCTTCTACAACCACAAGCTCACCAAGGAATTGATCGACCAAGACGACGCCGACTTCATCGGCCCCTACATTACCCGCCACACCTCCCCCCCCGTCTGCGGCCCTCACGGCATTCCCTACCTGATCAACCTCCCCGGTTCGGGTCATCGAATCAACGGCGAGCTCTACGCACTTGTGACCCGGGGGCTCGCCCGGTTCGACGAGCTAGAAGGCACCTCGGTCGGGCTCTACGAGCGGCTCACGGTTGTTGGTGGACGGCGTCGTTCCGGTCGAGCCCGAGGCCTATTTCGCTCCCAGAAGCTTCGCTTTTTCTTGATTCCTTCTTTCTCAGCCAAAACCATGGCTGACATTTCCGGCGACGAATCCAAACCCCACCTCATCTTCTCCTACGGCACACTCAAGCGAGGCTTCCGCAACCACAAGCTCACCGAGGAATTAATCGACCAAGACGACGCCGTTTTCATCGGCCCCTACATTACCCTCCACACCTACCCACTCGTCTGCGGCCCCCACGGATTGCCCTACCTCATCAACCTCCCCGGGTCGGGTCACCGGATCAGGGGCGAGCTCTACGCCCTTTCGACCCGGGGACTCGCCCGGTTCGACGAGCTGGAAGGCACCTCCATCGGGCACTACGAGCGGGTCCCGGTTCAATTGACGGTCAATGCGGACAGAGACGAAGTCGTTCCGGTCGAGGCCGAGGCCTATTTCGCGCACAGAAGCTTCGGGGAGGCCATGTGGGAGAGGAACGGGAAGGAGGGTTTGACCGAGTTTACGGAGAATGAGACCAAAGGATACGTGAAAAGACAGGATAGGCCTAATCAGGGTCGCAATATTCTCGAGGACGTCCGGCATTTTGTGAATGGAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GGACT

Protein Analysis

314

Amino Acids

35.25

Weight (kDa)

6.36

Isoelectric Point (pI)

35.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GGACT PF06094 15 - 105 1.8e-11 Gamma-glutamyl cyclotransferase, AIG2-like
GGACT PF06094 150 - 263 8.3e-18 Gamma-glutamyl cyclotransferase, AIG2-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 918
AccB1I GGYRCC 2 cut(s) 281, 686
AccBSI CCGCTC 2 cut(s) 304, 709
AccII CGCG 1 cut(s) 782
AciI CCGC 7 cut(s) 145, 168, 304, 481, 573, 709, 737
AclWI GGATC 1 cut(s) 632
AcyI GRCGYC 4 cut(s) 117, 328, 522, 915
AfiI CCNNNNNNNGG 9 cut(s) 167, 208, 209, 291, 613, 614, 628, 696, 893
AgsI TTSAA 1 cut(s) 722
AluBI AGCT 8 cut(s) 88, 232, 274, 370, 493, 637, 679, 792
AluI AGCT 8 cut(s) 88, 232, 274, 370, 493, 637, 679, 792
Alw21I GWGCWC 2 cut(s) 234, 639
Alw26I GTCTC 2 cut(s) 738, 848
AlwI GGATC 1 cut(s) 632
Ama87I CYCGRG 5 cut(s) 249, 345, 608, 654, 908
AoxI GGCC 9 cut(s) 130, 169, 349, 535, 574, 765, 771, 801, 884
AseI ATTAAT 1 cut(s) 506
Asp700I GAANNNNTTC 1 cut(s) 753
AspLEI GCGC 1 cut(s) 784
AspS9I GGNCC 5 cut(s) 131, 170, 536, 575, 712
AsuHPI GGTGA 4 cut(s) 26, 82, 487, 611
AvaI CYCGRG 5 cut(s) 249, 345, 608, 654, 908
AvaII GGWCC 1 cut(s) 712
BaeGI GKGCMC 1 cut(s) 702
BanI GGYRCC 2 cut(s) 281, 686
BanII GRGCYC 5 cut(s) 234, 258, 297, 346, 639
Bbv12I GWGCWC 2 cut(s) 234, 639
BccI CCATC 1 cut(s) 701
BceAI ACGGC 6 cut(s) 70, 193, 241, 341, 475, 509
BcgI CGANNNNNNTGC 6 cut(s) 271, 305, 676, 710, 889, 923
BciVI GTATCC 1 cut(s) 857
BclI TGATCA 1 cut(s) 192
BcoDI GTCTC 2 cut(s) 738, 848
BfaI CTAG 2 cut(s) 38, 275
BfuI GTATCC 1 cut(s) 857
BglI GCCNNNNNGGC 1 cut(s) 177
BisI GCNGC 3 cut(s) 169, 305, 574
BlsI GCNGC 3 cut(s) 170, 306, 575
Bme18I GGWCC 1 cut(s) 712
BmeT110I CYCGRG 5 cut(s) 249, 345, 608, 654, 908
BmgT120I GGNCC 5 cut(s) 131, 170, 536, 575, 712
BmiI GGNNCC 7 cut(s) 133, 283, 538, 577, 688, 713, 714
BmsI GCATC 1 cut(s) 13
BpuEI CTTGAG 2 cut(s) 47, 452
BsaAI YACGTR 1 cut(s) 868
BsaHI GRCGYC 4 cut(s) 117, 328, 522, 915
BsaI GGTCTC 1 cut(s) 848
BsaWI WCCGGW 3 cut(s) 335, 621, 757
BsaXI ACNNNNNCTCC 2 cut(s) 791, 821
Bsc4I CCNNNNNNNGG 9 cut(s) 167, 208, 209, 291, 613, 614, 628, 696, 893
BseGI GGATG 2 cut(s) 10, 11
BseLI CCNNNNNNNGG 9 cut(s) 167, 208, 209, 291, 613, 614, 628, 696, 893
BseMII CTCAG 1 cut(s) 411
BseSI GKGCMC 1 cut(s) 702
Bsh1236I CGCG 1 cut(s) 782
Bsh1285I CGRYCG 3 cut(s) 291, 340, 762
BshFI GGCC 9 cut(s) 132, 171, 351, 537, 576, 767, 773, 803, 886
BshNI GGYRCC 2 cut(s) 281, 686
BsiEI CGRYCG 3 cut(s) 291, 340, 762
BsiHKAI GWGCWC 2 cut(s) 234, 639
BsiHKCI CYCGRG 5 cut(s) 249, 345, 608, 654, 908
BslFI GGGAC 2 cut(s) 672, 698
BslI CCNNNNNNNGG 9 cut(s) 167, 208, 209, 291, 613, 614, 628, 696, 893
BsmAI GTCTC 2 cut(s) 738, 848
BsmBI CGTCTC 1 cut(s) 738
BsmFI GGGAC 2 cut(s) 672, 698
BsmI GAATGC 1 cut(s) 180
BsnI GGCC 9 cut(s) 132, 171, 351, 537, 576, 767, 773, 803, 886
Bso31I GGTCTC 1 cut(s) 848
BsoBI CYCGRG 5 cut(s) 249, 345, 608, 654, 908
Bsp1286I GDGCHC 6 cut(s) 234, 258, 297, 346, 639, 702
Bsp143I GATC 3 cut(s) 102, 192, 624
Bsp19I CCATGG 1 cut(s) 408
BspACI CCGC 7 cut(s) 145, 168, 304, 481, 573, 709, 737
BspANI GGCC 9 cut(s) 132, 171, 351, 537, 576, 767, 773, 803, 886
BspCNI CTCAG 1 cut(s) 410
BspFNI CGCG 1 cut(s) 782
BspLI GGNNCC 7 cut(s) 133, 283, 538, 577, 688, 713, 714
BspPI GGATC 1 cut(s) 632
BspT107I GGYRCC 2 cut(s) 281, 686
BspTNI GGTCTC 1 cut(s) 848
BsrBI CCGCTC 2 cut(s) 304, 709
BssMI GATC 3 cut(s) 102, 192, 624
BssNI GRCGYC 4 cut(s) 117, 328, 522, 915
BssT1I CCWWGG 2 cut(s) 93, 408
Bst4CI ACNGT 2 cut(s) 313, 730
BstACI GRCGYC 4 cut(s) 117, 328, 522, 915
BstBAI YACGTR 1 cut(s) 868
BstC8I GCNNGC 3 cut(s) 230, 258, 635
BstDEI CTNAG 1 cut(s) 397
BstDSI CCRYGG 2 cut(s) 408, 580
BstEII GGTNACC 1 cut(s) 617
BstF5I GGATG 2 cut(s) 10, 11
BstFNI CGCG 1 cut(s) 782
BstHHI GCGC 1 cut(s) 784
BstKTI GATC 3 cut(s) 105, 195, 627
BstMAI GTCTC 2 cut(s) 738, 848
BstMBI GATC 3 cut(s) 102, 192, 624
BstMCI CGRYCG 3 cut(s) 291, 340, 762
BstMWI GCNNNNNNNGC 5 cut(s) 177, 301, 357, 706, 779
BstPI GGTNACC 1 cut(s) 617
BstSLI GKGCMC 1 cut(s) 702
BstUI CGCG 1 cut(s) 782
BstXI CCANNNNNNTGG 1 cut(s) 409
BsuI GTATCC 1 cut(s) 857
BsuRI GGCC 9 cut(s) 132, 171, 351, 537, 576, 767, 773, 803, 886
BtgI CCRYGG 2 cut(s) 408, 580
BtsCI GGATG 2 cut(s) 10, 11
Cac8I GCNNGC 3 cut(s) 230, 258, 635
CfoI GCGC 1 cut(s) 784
Cfr13I GGNCC 5 cut(s) 131, 170, 536, 575, 712
Cfr9I CCCGGG 3 cut(s) 249, 608, 654
CseI GACGC 3 cut(s) 125, 317, 530
CviAII CATG 2 cut(s) 409, 805
DdeI CTNAG 1 cut(s) 397
DpnI GATC 3 cut(s) 104, 194, 626
DpnII GATC 3 cut(s) 102, 192, 624
Ecl136II GAGCTC 2 cut(s) 232, 637
Eco130I CCWWGG 2 cut(s) 93, 408
Eco147I AGGCCT 3 cut(s) 351, 773, 886
Eco24I GRGCYC 5 cut(s) 234, 258, 297, 346, 639
Eco31I GGTCTC 1 cut(s) 848
Eco47I GGWCC 1 cut(s) 712
Eco53kI GAGCTC 2 cut(s) 232, 637
Eco88I CYCGRG 5 cut(s) 249, 345, 608, 654, 908
Eco91I GGTNACC 1 cut(s) 617
EcoICRI GAGCTC 2 cut(s) 232, 637
EcoO109I RGGNCCY 1 cut(s) 712
EcoO65I GGTNACC 1 cut(s) 617
EcoT14I CCWWGG 2 cut(s) 93, 408
EcoT38I GRGCYC 5 cut(s) 234, 258, 297, 346, 639
ErhI CCWWGG 2 cut(s) 93, 408
Esp3I CGTCTC 1 cut(s) 738
FaeI CATG 2 cut(s) 412, 808
FaiI YATR 2 cut(s) 410, 806
FalI AAGNNNNNCTT 6 cut(s) 56, 88, 359, 391, 461, 493
FaqI GGGAC 2 cut(s) 672, 698
FatI CATG 2 cut(s) 408, 804
FauI CCCGC 2 cut(s) 152, 702
FbaI TGATCA 1 cut(s) 192
Fnu4HI GCNGC 3 cut(s) 169, 305, 574
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 5 cut(s) 234, 258, 297, 346, 639
Fsp4HI GCNGC 3 cut(s) 169, 305, 574
FspBI CTAG 2 cut(s) 38, 275
GlaI GCGC 1 cut(s) 783
GluI GCNGC 3 cut(s) 169, 305, 574
HaeIII GGCC 9 cut(s) 132, 171, 351, 537, 576, 767, 773, 803, 886
HgaI GACGC 3 cut(s) 125, 317, 530
HhaI GCGC 1 cut(s) 784
Hin1I GRCGYC 4 cut(s) 117, 328, 522, 915
Hin1II CATG 2 cut(s) 412, 808
Hin6I GCGC 1 cut(s) 782
HinP1I GCGC 1 cut(s) 782
HindIII AAGCTT 2 cut(s) 368, 790
HinfI GANTC 4 cut(s) 219, 385, 431, 660
HphI GGTGA 4 cut(s) 26, 82, 487, 611
Hpy166II GTNNAC 2 cut(s) 323, 843
Hpy188III TCNNGA 2 cut(s) 382, 908
Hpy8I GTNNAC 2 cut(s) 323, 843
Hpy99I CGWCG 7 cut(s) 23, 119, 272, 333, 431, 524, 677
HpyAV CCTTC 4 cut(s) 272, 399, 677, 817
HpyCH4III ACNGT 2 cut(s) 313, 730
HpyCH4IV ACGT 2 cut(s) 867, 915
HpyF10VI GCNNNNNNNGC 5 cut(s) 177, 301, 357, 706, 779
HpyF3I CTNAG 1 cut(s) 397
HpySE526I ACGT 2 cut(s) 867, 915
Hsp92I GRCGYC 4 cut(s) 117, 328, 522, 915
Hsp92II CATG 2 cut(s) 412, 808
HspAI GCGC 1 cut(s) 782
KflI GGGWCCC 1 cut(s) 712
Ksp22I TGATCA 1 cut(s) 192
Kzo9I GATC 3 cut(s) 102, 192, 624
LmnI GCTCC 1 cut(s) 365
LweI GCATC 1 cut(s) 13
MaeI CTAG 2 cut(s) 38, 275
MaeII ACGT 2 cut(s) 867, 915
MaeIII GTNAC 2 cut(s) 244, 617
MalI GATC 3 cut(s) 104, 194, 626
MbiI CCGCTC 2 cut(s) 304, 709
MboI GATC 3 cut(s) 102, 192, 624
MboII GAAGA 2 cut(s) 37, 442
MfeI CAATTG 1 cut(s) 722
MhlI GDGCHC 6 cut(s) 234, 258, 297, 346, 639, 702
MluCI AATT 3 cut(s) 98, 503, 722
MlyI GAGTC 1 cut(s) 654
MroXI GAANNNNTTC 1 cut(s) 753
MseI TTAA 1 cut(s) 506
MunI CAATTG 1 cut(s) 722
Mva1269I GAATGC 1 cut(s) 180
MvnI CGCG 1 cut(s) 782
MwoI GCNNNNNNNGC 5 cut(s) 177, 301, 357, 706, 779
NcoI CCATGG 1 cut(s) 408
NdeII GATC 3 cut(s) 102, 192, 624
NlaIII CATG 2 cut(s) 412, 808
NlaIV GGNNCC 7 cut(s) 133, 283, 538, 577, 688, 713, 714
NmeAIII GCCGAG 1 cut(s) 793
NmuCI GTSAC 2 cut(s) 244, 617
PaeR7I CTCGAG 1 cut(s) 908
PceI AGGCCT 3 cut(s) 351, 773, 886
PcsI WCGNNNNNNNCGW 8 cut(s) 111, 264, 297, 337, 516, 669, 702, 759
PctI GAATGC 1 cut(s) 180
PdmI GAANNNNTTC 1 cut(s) 753
PfeI GAWTC 3 cut(s) 219, 385, 431
PflFI GACNNNGTC 2 cut(s) 327, 749
PkrI GCNGC 3 cut(s) 170, 306, 575
PleI GAGTC 1 cut(s) 654
PpsI GAGTC 1 cut(s) 654
Ppu21I YACGTR 1 cut(s) 868
PpuMI RGGWCCY 1 cut(s) 712
PshBI ATTAAT 1 cut(s) 506
Psp124BI GAGCTC 2 cut(s) 234, 639
Psp5II RGGWCCY 1 cut(s) 712
PspEI GGTNACC 1 cut(s) 617
PspN4I GGNNCC 7 cut(s) 133, 283, 538, 577, 688, 713, 714
PspPI GGNCC 5 cut(s) 131, 170, 536, 575, 712
PspPPI RGGWCCY 1 cut(s) 712
PsyI GACNNNGTC 2 cut(s) 327, 749
SacI GAGCTC 2 cut(s) 234, 639
SaqAI TTAA 1 cut(s) 506
SatI GCNGC 3 cut(s) 169, 305, 574
Sau3AI GATC 3 cut(s) 102, 192, 624
Sau96I GGNCC 5 cut(s) 131, 170, 536, 575, 712
SchI GAGTC 1 cut(s) 654
SduI GDGCHC 6 cut(s) 234, 258, 297, 346, 639, 702
SfaNI GCATC 1 cut(s) 13
Sfr274I CTCGAG 1 cut(s) 908
SinI GGWCC 1 cut(s) 712
SlaI CTCGAG 1 cut(s) 908
SmaI CCCGGG 3 cut(s) 251, 610, 656
SmlI CTYRAG 3 cut(s) 62, 467, 908
SmoI CTYRAG 3 cut(s) 62, 467, 908
Sse9I AATT 3 cut(s) 98, 503, 722
SseBI AGGCCT 3 cut(s) 351, 773, 886
SsiI CCGC 7 cut(s) 145, 168, 304, 481, 573, 709, 737
SspI AATATT 1 cut(s) 904
SspMI CTAG 2 cut(s) 38, 275
SstI GAGCTC 2 cut(s) 234, 639
StuI AGGCCT 3 cut(s) 351, 773, 886
StyI CCWWGG 2 cut(s) 93, 408
TaaI ACNGT 2 cut(s) 313, 730
TaiI ACGT 2 cut(s) 870, 918
TaqI TCGA 9 cut(s) 105, 217, 267, 340, 510, 650, 672, 762, 909
TaqII GACCGA 2 cut(s) 277, 851
TasI AATT 3 cut(s) 98, 503, 722
TauI GCSGC 3 cut(s) 171, 307, 576
TfiI GAWTC 3 cut(s) 219, 385, 431
Tru1I TTAA 1 cut(s) 506
Tru9I TTAA 1 cut(s) 506
TseFI GTSAC 2 cut(s) 244, 617
Tsp45I GTSAC 2 cut(s) 244, 617
TspDTI ATGAA 3 cut(s) 21, 115, 520
TspGWI ACGGA 2 cut(s) 597, 860
TspMI CCCGGG 3 cut(s) 249, 608, 654
Tth111I GACNNNGTC 2 cut(s) 327, 749
VpaK11BI GGWCC 1 cut(s) 712
VspI ATTAAT 1 cut(s) 506
XhoI CTCGAG 1 cut(s) 908
XmaI CCCGGG 3 cut(s) 249, 608, 654
XmnI GAANNNNTTC 1 cut(s) 753
XspI CTAG 2 cut(s) 38, 275
ZraI GACGTC 1 cut(s) 916
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.