Prupe.5G058200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0014747
Physical Location & Seq
Forward (+)
6291876 .. 6293307
1432 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G058200.1

Sequence Viewer

Length: 939 bp
ATGGACGACGGCGCCGACAGCTACGAGTACGAGAACGACTCGTCGTCTGAGTCCAGCTCCGGCTCGGTGGCCTGCACCGGCATTATTATGGTCTCGCCACCGGAGAGCTCAGAGGATGACGAAGCTCACAACAACAGAGCCTCCCAAGACGTGTTCCAGACCCCACCCGAATACTCATACCCGCCAACCTCCGAAGGGAAAACTCCGTCGCTGGAAGTTAATACGAGCGACGACGATCCTCCGTACGAGGATGTTGGAGACGGGCGAGGCGTAATCGTGGCCTTCGGCGAAGGTACGGGTGCGGTGGATTTGGGAGGGGACACGGATCTAGGGTTTGCAGAGGCTGCAGCGGTGGAATGTAGGGTTTTGAGGAGGGAATTGTCCCCGGAAGGCGGTTTACTGGAACCCCCATTGAAGAAATTGAAGGATTCCGAGCACAATTTGGGAAAATTTGAGCCCTCCTGTAGTTCCACTGAAAGTCTCGAAATTGACGGTTGCGATGAGAGTTCGGGTGAGGAAGGCTCGGAGGAAAGGAAGCTGAACTCTTCTGACAACGAGAGCGAGAGTGCTGTCGAAGAAACTCAATCGAACAGTGATGAAAAAGACAGCGTTGTGGAGATGGAGGATGGCGGCGAGGAATGCCTGGATGATGTGATGAGGGGTACACCAAATGTGACTATTGAGGAATTGCGGCGAATAGACAGCCCGTGGCGAGGGCGGGCTCTGCCACGATCGATCGTGCAGCCAGGTTCTAGTGCTATGGATGGTGAGGATATGGTGCAGAATGAGGTTGCTATATTGGATGTGTTGAAACTTCTGAAAGACAAGTATGATGGTGATGGTGATGATGTGGTTGACAATGGTAGTTTTTGGGAGATAAGTAGGCGTCGAGGCATGACTTTTCCCCGGCCATCGTGGTGGCCAGAAGGCGGGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

313

Amino Acids

33.8

Weight (kDa)

4.05

Isoelectric Point (pI)

65.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 11
AciI CCGC 8 cut(s) 182, 302, 350, 393, 630, 691, 718, 930
AclWI GGATC 2 cut(s) 230, 333
AcoI YGGCCR 2 cut(s) 908, 920
AcsI RAATTY 1 cut(s) 449
AcyI GRCGYC 2 cut(s) 12, 886
AfaI GTAC 4 cut(s) 29, 245, 295, 664
AfiI CCNNNNNNNGG 4 cut(s) 195, 392, 713, 929
AflIII ACRYGT 1 cut(s) 150
AgsI TTSAA 3 cut(s) 415, 424, 811
AhdI GACNNNNNGTC 1 cut(s) 43
AjiI CACGTC 1 cut(s) 151
AjnI CCWGG 2 cut(s) 642, 745
AluBI AGCT 5 cut(s) 21, 57, 108, 125, 538
AluI AGCT 5 cut(s) 21, 57, 108, 125, 538
Alw21I GWGCWC 2 cut(s) 110, 438
Alw26I GTCTC 3 cut(s) 97, 252, 485
AlwI GGATC 2 cut(s) 230, 333
AlwNI CAGNNNCTG 1 cut(s) 344
AoxI GGCC 4 cut(s) 69, 279, 908, 920
ApeKI GCWGC 3 cut(s) 344, 347, 742
ApoI RAATTY 1 cut(s) 449
AspLEI GCGC 1 cut(s) 14
AsuC2I CCSGG 2 cut(s) 386, 907
AsuHPI GGTGA 4 cut(s) 524, 779, 848, 854
BalI TGGCCA 1 cut(s) 922
BanI GGYRCC 1 cut(s) 11
BanII GRGCYC 3 cut(s) 110, 459, 724
BarI GAAGNNNNNNTAC 2 cut(s) 381, 413
Bbv12I GWGCWC 2 cut(s) 110, 438
BbvI GCAGC 3 cut(s) 331, 359, 754
BccI CCATC 6 cut(s) 613, 620, 758, 827, 833, 919
BceAI ACGGC 1 cut(s) 25
BciT130I CCWGG 2 cut(s) 644, 747
BcnI CCSGG 2 cut(s) 386, 907
BcoDI GTCTC 3 cut(s) 97, 252, 485
BfaI CTAG 2 cut(s) 329, 753
BfmI CTRYAG 2 cut(s) 345, 463
BfoI RGCGCY 1 cut(s) 15
BisI GCNGC 5 cut(s) 345, 348, 631, 692, 743
BlsI GCNGC 5 cut(s) 346, 349, 632, 693, 744
Bme1390I CCNGG 4 cut(s) 386, 644, 747, 907
BmeRI GACNNNNNGTC 1 cut(s) 43
BmgBI CACGTC 1 cut(s) 151
BmiI GGNNCC 2 cut(s) 13, 405
BmrFI CCNGG 4 cut(s) 386, 644, 747, 907
BplI GAGNNNNNCTC 6 cut(s) 23, 55, 41, 73, 506, 538
BpuMI CCSGG 2 cut(s) 386, 907
Bsa29I ATCGAT 1 cut(s) 734
BsaHI GRCGYC 2 cut(s) 12, 886
BsaI GGTCTC 1 cut(s) 97
BsaJI CCNNGG 3 cut(s) 384, 707, 905
BsaWI WCCGGW 1 cut(s) 100
BsaXI ACNNNNNCTCC 2 cut(s) 125, 155
Bsc4I CCNNNNNNNGG 4 cut(s) 195, 392, 713, 929
Bse118I RCCGGY 1 cut(s) 77
Bse1I ACTGG 1 cut(s) 405
BseBI CCWGG 2 cut(s) 644, 747
BseCI ATCGAT 1 cut(s) 734
BseDI CCNNGG 3 cut(s) 384, 707, 905
BseGI GGATG 6 cut(s) 121, 256, 631, 652, 769, 808
BseLI CCNNNNNNNGG 4 cut(s) 195, 392, 713, 929
BseMII CTCAG 2 cut(s) 39, 123
BseNI ACTGG 1 cut(s) 405
BseRI GAGGAG 1 cut(s) 385
BseXI GCAGC 3 cut(s) 331, 359, 754
BsgI GTGCAG 3 cut(s) 58, 761, 800
Bsh1285I CGRYCG 2 cut(s) 734, 738
BshFI GGCC 4 cut(s) 71, 281, 910, 922
BshNI GGYRCC 1 cut(s) 11
BshVI ATCGAT 1 cut(s) 734
BsiEI CGRYCG 2 cut(s) 734, 738
BsiHKAI GWGCWC 2 cut(s) 110, 438
BsiSI CCGG 5 cut(s) 60, 78, 101, 386, 907
BsiWI CGTACG 1 cut(s) 243
BslFI GGGAC 2 cut(s) 332, 367
BslI CCNNNNNNNGG 4 cut(s) 195, 392, 713, 929
BsmAI GTCTC 3 cut(s) 97, 252, 485
BsmBI CGTCTC 1 cut(s) 252
BsmFI GGGAC 2 cut(s) 332, 367
BsmI GAATGC 1 cut(s) 644
BsnI GGCC 4 cut(s) 71, 281, 910, 922
Bso31I GGTCTC 1 cut(s) 97
Bsp1286I GDGCHC 4 cut(s) 110, 438, 459, 724
Bsp143I GATC 4 cut(s) 235, 325, 731, 735
BspACI CCGC 8 cut(s) 182, 302, 350, 393, 630, 691, 718, 930
BspANI GGCC 4 cut(s) 71, 281, 910, 922
BspCNI CTCAG 2 cut(s) 40, 122
BspDI ATCGAT 1 cut(s) 734
BspLI GGNNCC 2 cut(s) 13, 405
BspMAI CTGCAG 1 cut(s) 349
BspPI GGATC 2 cut(s) 230, 333
BspT107I GGYRCC 1 cut(s) 11
BspTNI GGTCTC 1 cut(s) 97
BsrFI RCCGGY 1 cut(s) 77
BsrI ACTGG 1 cut(s) 405
BssAI RCCGGY 1 cut(s) 77
BssECI CCNNGG 3 cut(s) 384, 707, 905
BssMI GATC 4 cut(s) 235, 325, 731, 735
BssNI GRCGYC 2 cut(s) 12, 886
Bst2UI CCWGG 2 cut(s) 644, 747
Bst4CI ACNGT 2 cut(s) 494, 593
Bst6I CTCTTC 1 cut(s) 550
BstACI GRCGYC 2 cut(s) 12, 886
BstAPI GCANNNNNTGC 1 cut(s) 344
BstC8I GCNNGC 2 cut(s) 73, 720
BstDEI CTNAG 2 cut(s) 48, 109
BstDSI CCRYGG 1 cut(s) 707
BstF5I GGATG 6 cut(s) 121, 256, 631, 652, 769, 808
BstH2I RGCGCY 1 cut(s) 15
BstHHI GCGC 1 cut(s) 14
BstKTI GATC 4 cut(s) 238, 328, 734, 738
BstMAI GTCTC 3 cut(s) 97, 252, 485
BstMBI GATC 4 cut(s) 235, 325, 731, 735
BstMCI CGRYCG 2 cut(s) 734, 738
BstMWI GCNNNNNNNGC 4 cut(s) 18, 344, 639, 724
BstNI CCWGG 2 cut(s) 644, 747
BstSCI CCNGG 4 cut(s) 384, 642, 745, 905
BstSFI CTRYAG 2 cut(s) 345, 463
BstV1I GCAGC 3 cut(s) 331, 359, 754
BstX2I RGATCY 1 cut(s) 325
BstXI CCANNNNNNTGG 1 cut(s) 918
BstYI RGATCY 1 cut(s) 325
Bsu15I ATCGAT 1 cut(s) 734
BsuRI GGCC 4 cut(s) 71, 281, 910, 922
BsuTUI ATCGAT 1 cut(s) 734
BtgI CCRYGG 1 cut(s) 707
BtgZI GCGATG 1 cut(s) 513
BtrI CACGTC 1 cut(s) 151
BtsCI GGATG 6 cut(s) 121, 256, 631, 652, 769, 808
BtsIMutI CAGTG 2 cut(s) 471, 598
Cac8I GCNNGC 2 cut(s) 73, 720
CaiI CAGNNNCTG 1 cut(s) 344
CfoI GCGC 1 cut(s) 14
Cfr10I RCCGGY 1 cut(s) 77
ClaI ATCGAT 1 cut(s) 734
CseI GACGC 1 cut(s) 875
Csp6I GTAC 4 cut(s) 28, 244, 294, 663
CviAII CATG 1 cut(s) 895
CviQI GTAC 4 cut(s) 28, 244, 294, 663
DdeI CTNAG 2 cut(s) 48, 109
DinI GGCGCC 1 cut(s) 13
DpnI GATC 4 cut(s) 237, 327, 733, 737
DpnII GATC 4 cut(s) 235, 325, 731, 735
DriI GACNNNNNGTC 1 cut(s) 43
EaeI YGGCCR 2 cut(s) 908, 920
Eam1104I CTCTTC 1 cut(s) 550
Eam1105I GACNNNNNGTC 1 cut(s) 43
EarI CTCTTC 1 cut(s) 550
Ecl136II GAGCTC 1 cut(s) 108
Eco24I GRGCYC 3 cut(s) 110, 459, 724
Eco31I GGTCTC 1 cut(s) 97
Eco53kI GAGCTC 1 cut(s) 108
EcoICRI GAGCTC 1 cut(s) 108
EcoRII CCWGG 2 cut(s) 642, 745
EcoT38I GRGCYC 3 cut(s) 110, 459, 724
EgeI GGCGCC 1 cut(s) 13
EheI GGCGCC 1 cut(s) 13
Esp3I CGTCTC 1 cut(s) 252
FaeI CATG 1 cut(s) 898
FaiI YATR 7 cut(s) 89, 178, 761, 776, 797, 831, 896
FaqI GGGAC 2 cut(s) 332, 367
FatI CATG 1 cut(s) 894
FauI CCCGC 3 cut(s) 189, 711, 923
Fnu4HI GCNGC 5 cut(s) 345, 348, 631, 692, 743
FokI GGATG 6 cut(s) 128, 263, 638, 659, 776, 815
FriOI GRGCYC 3 cut(s) 110, 459, 724
Fsp4HI GCNGC 5 cut(s) 345, 348, 631, 692, 743
FspBI CTAG 2 cut(s) 329, 753
GlaI GCGC 1 cut(s) 13
GluI GCNGC 5 cut(s) 345, 348, 631, 692, 743
HaeII RGCGCY 1 cut(s) 15
HaeIII GGCC 4 cut(s) 71, 281, 910, 922
HapII CCGG 5 cut(s) 60, 78, 101, 386, 907
HgaI GACGC 1 cut(s) 875
HhaI GCGC 1 cut(s) 14
Hin1I GRCGYC 2 cut(s) 12, 886
Hin1II CATG 1 cut(s) 898
Hin6I GCGC 1 cut(s) 12
HinP1I GCGC 1 cut(s) 12
HincII GTYRAC 1 cut(s) 856
HindII GTYRAC 1 cut(s) 856
HinfI GANTC 3 cut(s) 38, 50, 428
HpaII CCGG 5 cut(s) 60, 78, 101, 386, 907
HphI GGTGA 4 cut(s) 524, 779, 848, 854
Hpy166II GTNNAC 3 cut(s) 398, 665, 856
Hpy188I TCNGA 8 cut(s) 49, 112, 193, 433, 526, 550, 819, 938
Hpy188III TCNNGA 2 cut(s) 157, 482
Hpy8I GTNNAC 3 cut(s) 398, 665, 856
Hpy99I CGWCG 6 cut(s) 11, 46, 211, 233, 236, 891
HpyAV CCTTC 7 cut(s) 188, 284, 292, 383, 418, 512, 920
HpyCH4III ACNGT 2 cut(s) 494, 593
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 5 cut(s) 75, 338, 347, 742, 781
HpyF10VI GCNNNNNNNGC 4 cut(s) 18, 344, 639, 724
HpyF3I CTNAG 2 cut(s) 48, 109
HpySE526I ACGT 1 cut(s) 150
Hsp92I GRCGYC 2 cut(s) 12, 886
Hsp92II CATG 1 cut(s) 898
HspAI GCGC 1 cut(s) 12
KasI GGCGCC 1 cut(s) 11
Kzo9I GATC 4 cut(s) 235, 325, 731, 735
LmnI GCTCC 1 cut(s) 62
Lsp1109I GCAGC 3 cut(s) 331, 359, 754
MaeI CTAG 2 cut(s) 329, 753
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 1 cut(s) 673
MalI GATC 4 cut(s) 237, 327, 733, 737
MboI GATC 4 cut(s) 235, 325, 731, 735
MboII GAAGA 3 cut(s) 427, 537, 587
MflI RGATCY 1 cut(s) 325
MhlI GDGCHC 4 cut(s) 110, 438, 459, 724
MlsI TGGCCA 1 cut(s) 922
MluCI AATT 6 cut(s) 377, 419, 439, 449, 486, 686
MluNI TGGCCA 1 cut(s) 922
Mly113I GGCGCC 1 cut(s) 12
MlyI GAGTC 2 cut(s) 32, 59
MmeI TCCRAC 1 cut(s) 235
Mox20I TGGCCA 1 cut(s) 922
MscI TGGCCA 1 cut(s) 922
MseI TTAA 1 cut(s) 219
MslI CAYNNNNRTG 2 cut(s) 86, 916
Msp20I TGGCCA 1 cut(s) 922
MspA1I CMGCKG 1 cut(s) 350
MspI CCGG 5 cut(s) 60, 78, 101, 386, 907
MspR9I CCNGG 4 cut(s) 386, 644, 747, 907
Mva1269I GAATGC 1 cut(s) 644
MvaI CCWGG 2 cut(s) 644, 747
MwoI GCNNNNNNNGC 4 cut(s) 18, 344, 639, 724
NarI GGCGCC 1 cut(s) 12
NciI CCSGG 2 cut(s) 386, 907
NdeII GATC 4 cut(s) 235, 325, 731, 735
NlaIII CATG 1 cut(s) 898
NlaIV GGNNCC 2 cut(s) 13, 405
NmuCI GTSAC 1 cut(s) 673
PcsI WCGNNNNNNNCGW 2 cut(s) 12, 267
PctI GAATGC 1 cut(s) 644
PfeI GAWTC 1 cut(s) 428
Pfl23II CGTACG 1 cut(s) 243
PkrI GCNGC 5 cut(s) 346, 349, 632, 693, 744
Ple19I CGATCG 2 cut(s) 734, 738
PleI GAGTC 2 cut(s) 32, 58
PluTI GGCGCC 1 cut(s) 15
PpsI GAGTC 2 cut(s) 32, 58
Psp124BI GAGCTC 1 cut(s) 110
Psp6I CCWGG 2 cut(s) 642, 745
PspGI CCWGG 2 cut(s) 642, 745
PspLI CGTACG 1 cut(s) 243
PspN4I GGNNCC 2 cut(s) 13, 405
PstI CTGCAG 1 cut(s) 349
PstNI CAGNNNCTG 1 cut(s) 344
PsuI RGATCY 1 cut(s) 325
PvuI CGATCG 2 cut(s) 734, 738
RsaI GTAC 4 cut(s) 29, 245, 295, 664
RsaNI GTAC 4 cut(s) 28, 244, 294, 663
RseI CAYNNNNRTG 2 cut(s) 86, 916
SacI GAGCTC 1 cut(s) 110
SaqAI TTAA 1 cut(s) 219
SatI GCNGC 5 cut(s) 345, 348, 631, 692, 743
Sau3AI GATC 4 cut(s) 235, 325, 731, 735
SchI GAGTC 2 cut(s) 32, 59
ScrFI CCNGG 4 cut(s) 386, 644, 747, 907
SduI GDGCHC 4 cut(s) 110, 438, 459, 724
SfcI CTRYAG 2 cut(s) 345, 463
SfoI GGCGCC 1 cut(s) 13
SmiMI CAYNNNNRTG 2 cut(s) 86, 916
Sse9I AATT 6 cut(s) 377, 419, 439, 449, 486, 686
SsiI CCGC 8 cut(s) 182, 302, 350, 393, 630, 691, 718, 930
SspDI GGCGCC 1 cut(s) 11
SspMI CTAG 2 cut(s) 329, 753
SstI GAGCTC 1 cut(s) 110
StyD4I CCNGG 4 cut(s) 384, 642, 745, 905
TaaI ACNGT 2 cut(s) 494, 593
TaiI ACGT 1 cut(s) 153
TaqI TCGA 5 cut(s) 483, 573, 587, 734, 889
TasI AATT 6 cut(s) 377, 419, 439, 449, 486, 686
TauI GCSGC 2 cut(s) 633, 694
TfiI GAWTC 1 cut(s) 428
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TscAI CASTG 2 cut(s) 478, 598
TseFI GTSAC 1 cut(s) 673
TseI GCWGC 3 cut(s) 344, 347, 742
Tsp45I GTSAC 1 cut(s) 673
TspDTI ATGAA 1 cut(s) 612
TspGWI ACGGA 3 cut(s) 195, 231, 338
TspRI CASTG 2 cut(s) 478, 598
XapI RAATTY 1 cut(s) 449
XspI CTAG 2 cut(s) 329, 753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.