Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0014747

Physical Location & Seq

Genomic Coordinates Reverse (-)

21417616 .. 21418062

Gene Structure 447 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG227900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGCTCTATCTTCCGGATAGTTTTGATGAGGATGGAGCCGAGGACAAGAGCAGCGCCGGCCAGGACGTTTTCGAGATGCCGCCGGAGTCCGCCCTCATCGAAACCTCTCAGGAGAAGAGTCCCTTGCTCAATCTTGATCAGATCGGCGACGACGACGACGATCGTGATTACGAGAGATTTGGAGATATAGGAGATGGGAGCGGCGTCATTGTGGCAGTCGATGGTTTCGGTGAGGAAGGCGACGACGCTGTGGATTTGGGGAGGGATGCGGATCTGGTGACTTCGGAGGCGGAATGGGTGGAATTTAAGGTTTCGAACTACATGAAGGCGGTGAAATTGATTCCAGAGATTCGCAAGTGCTTCGAGTGCTACCTCTATCCTTCTACCTACCAGCGAACTCGAGTGAGATGCATGTCGAGGAGGGGCATAGCTAGTCTAGTCTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

148

Amino Acids

16.51

Weight (kDa)

4.12

Isoelectric Point (pI)

46.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014747)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g20250 FvH4_5g20250
prunus_persica	Prupe.5G058200_v2.0.a1
pyrus_communis	pycom04g04580
rosa_laevigata	RLG00000003388
rosa_multiflora	Rmu_sc0009317.1_g000001 Rmu_ssc0000004.1_g000025
rosa_roxburghii	Rroxscaffold_3G00252470
rosa_rugosa	Rorug07G0089700
rosa_samantha	Rh1CG080200 Rh1DG086700 Rh3CG227900 Rh7AG220400 Rh7BG216500 Rh7CG233200 Rh7DG227300
rosa_wichuraiana	Rw7G019050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	201
AccIII	TCCGGA	1 cut(s)	13
AciI	CCGC	6 cut(s)	80, 90, 201, 269, 290, 329
AclWI	GGATC	1 cut(s)	279
AcoI	YGGCCR	1 cut(s)	58
AcsI	RAATTY	1 cut(s)	302
AcyI	GRCGYC	1 cut(s)	204
AjnI	CCWGG	1 cut(s)	60
AluBI	AGCT	1 cut(s)	431
AluI	AGCT	1 cut(s)	431
AlwI	GGATC	1 cut(s)	279
Ama87I	CYCGRG	1 cut(s)	399
Aor13HI	TCCGGA	1 cut(s)	13
AoxI	GGCC	1 cut(s)	58
ApeKI	GCWGC	1 cut(s)	51
ApoI	RAATTY	1 cut(s)	302
AspLEI	GCGC	1 cut(s)	56
AsuHPI	GGTGA	3 cut(s)	242, 289, 343
AsuII	TTCGAA	1 cut(s)	314
AvaI	CYCGRG	1 cut(s)	399
BbvI	GCAGC	1 cut(s)	63
BccI	CCATC	3 cut(s)	26, 188, 215
BcgI	CGANNNNNNTGC	4 cut(s)	343, 377, 390, 424
BciT130I	CCWGG	1 cut(s)	62
BclI	TGATCA	1 cut(s)	136
BfaI	CTAG	3 cut(s)	432, 437, 445
BfoI	RGCGCY	1 cut(s)	57
BisI	GCNGC	3 cut(s)	52, 80, 202
BlsI	GCNGC	3 cut(s)	53, 81, 203
Bme1390I	CCNGG	1 cut(s)	62
BmeT110I	CYCGRG	1 cut(s)	399
BmiI	GGNNCC	1 cut(s)	37
BmrFI	CCNGG	1 cut(s)	62
BmsI	GCATC	3 cut(s)	66, 256, 398
Bpu14I	TTCGAA	1 cut(s)	314
BsaBI	GATNNNNATC	1 cut(s)	270
BsaHI	GRCGYC	1 cut(s)	204
BsaJI	CCNNGG	1 cut(s)	39
BsaWI	WCCGGW	1 cut(s)	13
Bse118I	RCCGGY	1 cut(s)	56
Bse8I	GATNNNNATC	1 cut(s)	270
BseAI	TCCGGA	1 cut(s)	13
BseBI	CCWGG	1 cut(s)	62
BseDI	CCNNGG	1 cut(s)	39
BseGI	GGATG	2 cut(s)	37, 271
BseJI	GATNNNNATC	1 cut(s)	270
BseMII	CTCAG	1 cut(s)	122
BseRI	GAGGAG	1 cut(s)	433
BseXI	GCAGC	1 cut(s)	63
Bsh1285I	CGRYCG	1 cut(s)	163
BshFI	GGCC	1 cut(s)	60
BsiEI	CGRYCG	1 cut(s)	163
BsiHKCI	CYCGRG	1 cut(s)	399
BsiSI	CCGG	3 cut(s)	14, 57, 83
BslFI	GGGAC	1 cut(s)	105
BsmFI	GGGAC	1 cut(s)	105
BsnI	GGCC	1 cut(s)	60
BsoBI	CYCGRG	1 cut(s)	399
Bsp119I	TTCGAA	1 cut(s)	314
Bsp13I	TCCGGA	1 cut(s)	13
Bsp143I	GATC	4 cut(s)	136, 141, 160, 271
BspACI	CCGC	6 cut(s)	80, 90, 201, 269, 290, 329
BspANI	GGCC	1 cut(s)	60
BspCNI	CTCAG	1 cut(s)	121
BspEI	TCCGGA	1 cut(s)	13
BspLI	GGNNCC	1 cut(s)	37
BspPI	GGATC	1 cut(s)	279
BspT104I	TTCGAA	1 cut(s)	314
BsrBI	CCGCTC	1 cut(s)	201
BsrFI	RCCGGY	1 cut(s)	56
BssAI	RCCGGY	1 cut(s)	56
BssECI	CCNNGG	1 cut(s)	39
BssMI	GATC	4 cut(s)	136, 141, 160, 271
BssNI	GRCGYC	1 cut(s)	204
Bst2UI	CCWGG	1 cut(s)	62
Bst6I	CTCTTC	1 cut(s)	110
BstACI	GRCGYC	1 cut(s)	204
BstBI	TTCGAA	1 cut(s)	314
BstC8I	GCNNGC	1 cut(s)	58
BstDEI	CTNAG	1 cut(s)	108
BstF5I	GGATG	2 cut(s)	37, 271
BstH2I	RGCGCY	1 cut(s)	57
BstHHI	GCGC	1 cut(s)	56
BstKTI	GATC	4 cut(s)	139, 144, 163, 274
BstMBI	GATC	4 cut(s)	136, 141, 160, 271
BstMCI	CGRYCG	1 cut(s)	163
BstMWI	GCNNNNNNNGC	2 cut(s)	57, 366
BstNI	CCWGG	1 cut(s)	62
BstNSI	RCATGY	1 cut(s)	415
BstSCI	CCNGG	1 cut(s)	60
BstV1I	GCAGC	1 cut(s)	63
BstX2I	RGATCY	1 cut(s)	271
BstYI	RGATCY	1 cut(s)	271
BsuRI	GGCC	1 cut(s)	60
BtsCI	GGATG	2 cut(s)	37, 271
Cac8I	GCNNGC	1 cut(s)	58
CfoI	GCGC	1 cut(s)	56
Cfr10I	RCCGGY	1 cut(s)	56
CseI	GACGC	2 cut(s)	193, 254
CviAII	CATG	2 cut(s)	322, 412
CviJI	RGCY	3 cut(s)	38, 60, 431
CviKI_1	RGCY	3 cut(s)	38, 60, 431
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	4 cut(s)	138, 143, 162, 273
DpnII	GATC	4 cut(s)	136, 141, 160, 271
EaeI	YGGCCR	1 cut(s)	58
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
EciI	GGCGGA	2 cut(s)	79, 305
Eco88I	CYCGRG	1 cut(s)	399
EcoRII	CCWGG	1 cut(s)	60
EcoT22I	ATGCAT	1 cut(s)	413
FaeI	CATG	2 cut(s)	325, 415
FaiI	YATR	4 cut(s)	188, 323, 413, 428
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FaqI	GGGAC	1 cut(s)	105
FatI	CATG	2 cut(s)	321, 411
FbaI	TGATCA	1 cut(s)	136
Fnu4HI	GCNGC	3 cut(s)	52, 80, 202
FokI	GGATG	2 cut(s)	44, 278
Fsp4HI	GCNGC	3 cut(s)	52, 80, 202
FspBI	CTAG	3 cut(s)	432, 437, 445
GlaI	GCGC	1 cut(s)	55
GluI	GCNGC	3 cut(s)	52, 80, 202
HaeII	RGCGCY	1 cut(s)	57
HaeIII	GGCC	1 cut(s)	60
HapII	CCGG	3 cut(s)	14, 57, 83
HgaI	GACGC	2 cut(s)	193, 254
HhaI	GCGC	1 cut(s)	56
Hin1I	GRCGYC	1 cut(s)	204
Hin1II	CATG	2 cut(s)	325, 415
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HinfI	GANTC	4 cut(s)	86, 118, 340, 349
HpaII	CCGG	3 cut(s)	14, 57, 83
HphI	GGTGA	3 cut(s)	242, 289, 343
Hpy188I	TCNGA	2 cut(s)	141, 286
Hpy188III	TCNNGA	6 cut(s)	14, 73, 110, 134, 164, 344
Hpy99I	CGWCG	6 cut(s)	152, 155, 158, 161, 245, 248
HpyAV	CCTTC	3 cut(s)	230, 319, 390
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	1 cut(s)	411
HpyF10VI	GCNNNNNNNGC	2 cut(s)	57, 366
HpyF3I	CTNAG	1 cut(s)	108
HpySE526I	ACGT	1 cut(s)	66
Hsp92I	GRCGYC	1 cut(s)	204
Hsp92II	CATG	2 cut(s)	325, 415
HspAI	GCGC	1 cut(s)	54
Kpn2I	TCCGGA	1 cut(s)	13
KroI	GCCGGC	1 cut(s)	56
KroNI	GCCGGC	1 cut(s)	58
Ksp22I	TGATCA	1 cut(s)	136
Kzo9I	GATC	4 cut(s)	136, 141, 160, 271
LmnI	GCTCC	2 cut(s)	35, 198
LpnPI	CCDG	9 cut(s)	27, 47, 70, 74, 95, 96, 260, 357, 404
Lsp1109I	GCAGC	1 cut(s)	63
LweI	GCATC	3 cut(s)	66, 256, 398
MaeI	CTAG	3 cut(s)	432, 437, 445
MaeII	ACGT	1 cut(s)	66
MaeIII	GTNAC	1 cut(s)	277
MalI	GATC	4 cut(s)	138, 143, 162, 273
MbiI	CCGCTC	1 cut(s)	201
MboI	GATC	4 cut(s)	136, 141, 160, 271
MboII	GAAGA	1 cut(s)	127
MflI	RGATCY	1 cut(s)	271
MluCI	AATT	2 cut(s)	302, 335
MlyI	GAGTC	2 cut(s)	95, 127
Mph1103I	ATGCAT	1 cut(s)	413
MroI	TCCGGA	1 cut(s)	13
MroNI	GCCGGC	1 cut(s)	56
MseI	TTAA	1 cut(s)	306
MspI	CCGG	3 cut(s)	14, 57, 83
MspR9I	CCNGG	1 cut(s)	62
MvaI	CCWGG	1 cut(s)	62
MwoI	GCNNNNNNNGC	2 cut(s)	57, 366
NaeI	GCCGGC	1 cut(s)	58
NdeII	GATC	4 cut(s)	136, 141, 160, 271
NgoMIV	GCCGGC	1 cut(s)	56
NlaIII	CATG	2 cut(s)	325, 415
NlaIV	GGNNCC	1 cut(s)	37
NmeAIII	GCCGAG	1 cut(s)	64
NmuCI	GTSAC	1 cut(s)	277
NsiI	ATGCAT	1 cut(s)	413
NspI	RCATGY	1 cut(s)	415
NspV	TTCGAA	1 cut(s)	314
PaeR7I	CTCGAG	1 cut(s)	399
PcsI	WCGNNNNNNNCGW	2 cut(s)	150, 156
PdiI	GCCGGC	1 cut(s)	58
PfeI	GAWTC	2 cut(s)	340, 349
PkrI	GCNGC	3 cut(s)	53, 81, 203
Ple19I	CGATCG	1 cut(s)	163
PleI	GAGTC	2 cut(s)	94, 126
PpsI	GAGTC	2 cut(s)	94, 126
Psp6I	CCWGG	1 cut(s)	60
PspGI	CCWGG	1 cut(s)	60
PspN4I	GGNNCC	1 cut(s)	37
PspXI	VCTCGAGB	1 cut(s)	399
PsuI	RGATCY	1 cut(s)	271
PvuI	CGATCG	1 cut(s)	163
SaqAI	TTAA	1 cut(s)	306
SatI	GCNGC	3 cut(s)	52, 80, 202
Sau3AI	GATC	4 cut(s)	136, 141, 160, 271
SchI	GAGTC	2 cut(s)	95, 127
ScrFI	CCNGG	1 cut(s)	62
SetI	ASST	6 cut(s)	69, 107, 312, 375, 389, 433
SfaNI	GCATC	3 cut(s)	66, 256, 398
Sfr274I	CTCGAG	1 cut(s)	399
SfuI	TTCGAA	1 cut(s)	314
SlaI	CTCGAG	1 cut(s)	399
SmlI	CTYRAG	1 cut(s)	399
SmoI	CTYRAG	1 cut(s)	399
Sse9I	AATT	2 cut(s)	302, 335
SsiI	CCGC	6 cut(s)	80, 90, 201, 269, 290, 329
SspMI	CTAG	3 cut(s)	432, 437, 445
StyD4I	CCNGG	1 cut(s)	60
TaiI	ACGT	1 cut(s)	69
TaqI	TCGA	7 cut(s)	72, 99, 219, 314, 363, 400, 416
TasI	AATT	2 cut(s)	302, 335
TauI	GCSGC	2 cut(s)	82, 204
TfiI	GAWTC	2 cut(s)	340, 349
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TseFI	GTSAC	1 cut(s)	277
TseI	GCWGC	1 cut(s)	51
Tsp45I	GTSAC	1 cut(s)	277
TspDTI	ATGAA	1 cut(s)	338
XapI	RAATTY	1 cut(s)	302
XceI	RCATGY	1 cut(s)	415
XhoI	CTCGAG	1 cut(s)	399
XspI	CTAG	3 cut(s)	432, 437, 445
Zsp2I	ATGCAT	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.