Rh7CG233200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0014747
Physical Location & Seq
Reverse (-)
21785026 .. 21785949
924 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG233200.1

Sequence Viewer

Length: 924 bp
ATGGACGACGCCGACGACGACTACTCCAGTACCGACTCCTCTTCCGATTCCAGTATTACTATTCCGGCAACCTCCGCCGGAATCGTCATGCTCTCTCTCCCGGACAGTTTCGATGAGGATGCAGCCGAGGACAAGAGCAGCGCCGACCAGGACGTTTTCGAGACCCCGCCGGAGTCCTCGCTCGTCGGAACCTCCCAGGAGAAGACTCCCTTGCTCGATCTTGATCAGATCGGCGATGACGACGATCGTGATTTCGAGGGAGATGGGAGCGGCGTCATCGTGGCCGTCGGTGGTTGCGGCGAGGAAGGCGACGGTGCTGTGGATTTGGGGCGGGATGCTGATCTGGTGGCTTCGGAGGCGGAATCGGTGGAATTGAGGGTTTCGAAGAGGGATTTGTCGATGGAAGGGAGTTCGGAGGAGTCTTCGCCACCGTCGAAGAAATTGAGGGTTTCGGAGCAGGAATCGGGGAAATCAGAGGAGGAATTGGAGACCGAGCGGCTCAGTCTGAGCAACCTCGGCTCTGATTCCGATCAAACTCTCGCAATTGCAGGGGATGATGCGGCCAAATCAGTTGAGGAAAGCTCAGGAAAGAAGAATGCTGAGTATTCAGACAGCGAGAGTGAGAATGCTACTGAAGAGACTCAACCGGTTACTGAAGAAAGCGGTAGCCCATCCAGCGTGGAGTATTCCTATCAGGAAGGCGGTGAAATTGATTCCAGAGATTCGCGAGTGCTGCCTCTATCCTTCTGCCCACCAGCAGACTCGAGTGAGAGGCATGCCGAGGAGGGGCATAGCTGGTCTAGTCTGTTGGAGATGTTGAAACGTGTGAGAGAAATAACTCGTCAAGACTGTAAAAATGAGGTTGATAAATGTAGCTTTTTGGAGATAGCTAAGCGTCGAGGCATGACTTTCCCTCAGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

307

Amino Acids

32.94

Weight (kDa)

4.05

Isoelectric Point (pI)

63.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 270, 496
AccII CGCG 1 cut(s) 727
AcoI YGGCCR 2 cut(s) 282, 561
AcuI CTGAAG 2 cut(s) 654, 675
AcyI GRCGYC 2 cut(s) 9, 273
AfaI GTAC 1 cut(s) 31
AfiI CCNNNNNNNGG 1 cut(s) 786
AflIII ACRYGT 1 cut(s) 823
AgeI ACCGGT 1 cut(s) 646
AgsI TTSAA 1 cut(s) 820
AjnI CCWGG 2 cut(s) 147, 195
AluBI AGCT 5 cut(s) 582, 795, 876, 890, 919
AluI AGCT 5 cut(s) 582, 795, 876, 890, 919
Alw26I GTCTC 3 cut(s) 155, 482, 632
Ama87I CYCGRG 1 cut(s) 763
AoxI GGCC 2 cut(s) 282, 561
ApeKI GCWGC 3 cut(s) 122, 138, 733
AsiGI ACCGGT 1 cut(s) 646
AspLEI GCGC 1 cut(s) 143
AsuC2I CCSGG 1 cut(s) 101
AsuHPI GGTGA 1 cut(s) 716
AsuII TTCGAA 1 cut(s) 383
AvaI CYCGRG 1 cut(s) 763
BaeI ACNNNNGTAYC 2 cut(s) 13, 46
BbsI GAAGAC 2 cut(s) 209, 414
BbvCI CCTCAGC 1 cut(s) 915
BbvI GCAGC 3 cut(s) 134, 150, 720
BccI CCATC 3 cut(s) 257, 394, 679
BceAI ACGGC 1 cut(s) 269
BcgI CGANNNNNNTGC 2 cut(s) 101, 135
BciT130I CCWGG 2 cut(s) 149, 197
BclI TGATCA 1 cut(s) 223
BcnI CCSGG 1 cut(s) 101
BcoDI GTCTC 3 cut(s) 155, 482, 632
BfaI CTAG 1 cut(s) 801
BfmI CTRYAG 1 cut(s) 920
BfoI RGCGCY 1 cut(s) 144
BisI GCNGC 7 cut(s) 123, 139, 271, 298, 497, 561, 734
BlpI GCTNAGC 1 cut(s) 891
BlsI GCNGC 7 cut(s) 124, 140, 272, 299, 498, 562, 735
Bme1390I CCNGG 3 cut(s) 101, 149, 197
BmeT110I CYCGRG 1 cut(s) 763
BmiI GGNNCC 1 cut(s) 190
BmrFI CCNGG 3 cut(s) 101, 149, 197
BmsI GCATC 3 cut(s) 109, 325, 547
BpiI GAAGAC 2 cut(s) 209, 414
BplI GAGNNNNNCTC 2 cut(s) 566, 598
BpmI CTGGAG 1 cut(s) 10
Bpu10I CCTNAGC 2 cut(s) 583, 915
Bpu1102I GCTNAGC 1 cut(s) 891
Bpu14I TTCGAA 1 cut(s) 383
BpuMI CCSGG 1 cut(s) 101
BsaBI GATNNNNATC 3 cut(s) 222, 339, 528
BsaHI GRCGYC 2 cut(s) 9, 273
BsaI GGTCTC 2 cut(s) 155, 482
BsaJI CCNNGG 4 cut(s) 126, 195, 514, 780
BsaWI WCCGGW 1 cut(s) 646
BsaXI ACNNNNNCTCC 2 cut(s) 8, 38
Bsc4I CCNNNNNNNGG 1 cut(s) 786
Bse118I RCCGGY 1 cut(s) 646
Bse1I ACTGG 2 cut(s) 27, 51
Bse8I GATNNNNATC 3 cut(s) 222, 339, 528
BseBI CCWGG 2 cut(s) 149, 197
BseDI CCNNGG 4 cut(s) 126, 195, 514, 780
BseGI GGATG 4 cut(s) 124, 340, 559, 671
BseJI GATNNNNATC 3 cut(s) 222, 339, 528
BseLI CCNNNNNNNGG 1 cut(s) 786
BseMII CTCAG 4 cut(s) 497, 514, 591, 597
BseNI ACTGG 2 cut(s) 27, 51
BseRI GAGGAG 4 cut(s) 28, 431, 491, 797
BseXI GCAGC 3 cut(s) 134, 150, 720
Bsh1236I CGCG 1 cut(s) 727
Bsh1285I CGRYCG 1 cut(s) 247
BshFI GGCC 2 cut(s) 284, 563
BshTI ACCGGT 1 cut(s) 646
BsiEI CGRYCG 1 cut(s) 247
BsiHKCI CYCGRG 1 cut(s) 763
BsiSI CCGG 5 cut(s) 65, 78, 101, 170, 647
BslI CCNNNNNNNGG 1 cut(s) 786
BsmAI GTCTC 3 cut(s) 155, 482, 632
BsmI GAATGC 2 cut(s) 601, 631
BsnI GGCC 2 cut(s) 284, 563
Bso31I GGTCTC 2 cut(s) 155, 482
BsoBI CYCGRG 1 cut(s) 763
Bsp119I TTCGAA 1 cut(s) 383
Bsp143I GATC 6 cut(s) 217, 223, 228, 244, 340, 529
Bsp1720I GCTNAGC 1 cut(s) 891
Bsp68I TCGCGA 1 cut(s) 727
BspANI GGCC 2 cut(s) 284, 563
BspCNI CTCAG 4 cut(s) 498, 513, 592, 596
BspFNI CGCG 1 cut(s) 727
BspLI GGNNCC 1 cut(s) 190
BspT104I TTCGAA 1 cut(s) 383
BspTNI GGTCTC 2 cut(s) 155, 482
BsrBI CCGCTC 2 cut(s) 270, 496
BsrFI RCCGGY 1 cut(s) 646
BsrI ACTGG 2 cut(s) 27, 51
BssAI RCCGGY 1 cut(s) 646
BssECI CCNNGG 4 cut(s) 126, 195, 514, 780
BssMI GATC 6 cut(s) 217, 223, 228, 244, 340, 529
BssNI GRCGYC 2 cut(s) 9, 273
Bst2UI CCWGG 2 cut(s) 149, 197
Bst4CI ACNGT 4 cut(s) 107, 314, 432, 851
Bst6I CTCTTC 3 cut(s) 46, 380, 630
BstACI GRCGYC 2 cut(s) 9, 273
BstBI TTCGAA 1 cut(s) 383
BstC8I GCNNGC 1 cut(s) 777
BstDEI CTNAG 6 cut(s) 500, 506, 583, 600, 891, 915
BstF5I GGATG 4 cut(s) 124, 340, 559, 671
BstFNI CGCG 1 cut(s) 727
BstH2I RGCGCY 1 cut(s) 144
BstHHI GCGC 1 cut(s) 143
BstKTI GATC 6 cut(s) 220, 226, 231, 247, 343, 532
BstMAI GTCTC 3 cut(s) 155, 482, 632
BstMBI GATC 6 cut(s) 217, 223, 228, 244, 340, 529
BstMCI CGRYCG 1 cut(s) 247
BstMWI GCNNNNNNNGC 6 cut(s) 74, 306, 356, 516, 675, 733
BstNI CCWGG 2 cut(s) 149, 197
BstNSI RCATGY 1 cut(s) 779
BstSCI CCNGG 3 cut(s) 99, 147, 195
BstSFI CTRYAG 1 cut(s) 920
BstUI CGCG 1 cut(s) 727
BstV1I GCAGC 3 cut(s) 134, 150, 720
BstV2I GAAGAC 2 cut(s) 209, 414
BsuRI GGCC 2 cut(s) 284, 563
BtgZI GCGATG 1 cut(s) 249
BtsCI GGATG 4 cut(s) 124, 340, 559, 671
BtuMI TCGCGA 1 cut(s) 727
Cac8I GCNNGC 1 cut(s) 777
CfoI GCGC 1 cut(s) 143
Cfr10I RCCGGY 1 cut(s) 646
CseI GACGC 3 cut(s) 17, 262, 884
Csp6I GTAC 1 cut(s) 30
CspAI ACCGGT 1 cut(s) 646
CviAII CATG 3 cut(s) 88, 776, 904
CviQI GTAC 1 cut(s) 30
DdeI CTNAG 6 cut(s) 500, 506, 583, 600, 891, 915
DpnI GATC 6 cut(s) 219, 225, 230, 246, 342, 531
DpnII GATC 6 cut(s) 217, 223, 228, 244, 340, 529
EaeI YGGCCR 2 cut(s) 282, 561
Eam1104I CTCTTC 3 cut(s) 46, 380, 630
EarI CTCTTC 3 cut(s) 46, 380, 630
EciI GGCGGA 2 cut(s) 64, 374
Eco31I GGTCTC 2 cut(s) 155, 482
Eco57I CTGAAG 2 cut(s) 654, 675
Eco88I CYCGRG 1 cut(s) 763
EcoRII CCWGG 2 cut(s) 147, 195
FaeI CATG 3 cut(s) 91, 779, 907
FaiI YATR 4 cut(s) 89, 777, 792, 905
FalI AAGNNNNNCTT 2 cut(s) 194, 226
FatI CATG 3 cut(s) 87, 775, 903
FauI CCCGC 2 cut(s) 174, 324
FbaI TGATCA 1 cut(s) 223
Fnu4HI GCNGC 7 cut(s) 123, 139, 271, 298, 497, 561, 734
FokI GGATG 4 cut(s) 131, 347, 566, 658
Fsp4HI GCNGC 7 cut(s) 123, 139, 271, 298, 497, 561, 734
FspBI CTAG 1 cut(s) 801
GlaI GCGC 1 cut(s) 142
GluI GCNGC 7 cut(s) 123, 139, 271, 298, 497, 561, 734
GsuI CTGGAG 1 cut(s) 10
HaeII RGCGCY 1 cut(s) 144
HaeIII GGCC 2 cut(s) 284, 563
HapII CCGG 5 cut(s) 65, 78, 101, 170, 647
HgaI GACGC 3 cut(s) 17, 262, 884
HhaI GCGC 1 cut(s) 143
Hin1I GRCGYC 2 cut(s) 9, 273
Hin1II CATG 3 cut(s) 91, 779, 907
Hin6I GCGC 1 cut(s) 141
HinP1I GCGC 1 cut(s) 141
HpaII CCGG 5 cut(s) 65, 78, 101, 170, 647
HphI GGTGA 1 cut(s) 716
Hpy188III TCNNGA 8 cut(s) 160, 221, 248, 585, 695, 717, 726, 845
Hpy99I CGWCG 9 cut(s) 11, 17, 20, 188, 245, 290, 314, 436, 900
HpyAV CCTTC 4 cut(s) 299, 398, 692, 754
HpyCH4III ACNGT 4 cut(s) 107, 314, 432, 851
HpyCH4IV ACGT 2 cut(s) 153, 823
HpyCH4V TGCA 2 cut(s) 122, 548
HpyF10VI GCNNNNNNNGC 6 cut(s) 74, 306, 356, 516, 675, 733
HpyF3I CTNAG 6 cut(s) 500, 506, 583, 600, 891, 915
HpySE526I ACGT 2 cut(s) 153, 823
Hsp92I GRCGYC 2 cut(s) 9, 273
Hsp92II CATG 3 cut(s) 91, 779, 907
HspAI GCGC 1 cut(s) 141
Ksp22I TGATCA 1 cut(s) 223
Kzo9I GATC 6 cut(s) 217, 223, 228, 244, 340, 529
LmnI GCTCC 2 cut(s) 267, 454
Lsp1109I GCAGC 3 cut(s) 134, 150, 720
LweI GCATC 3 cut(s) 109, 325, 547
MaeI CTAG 1 cut(s) 801
MaeII ACGT 2 cut(s) 153, 823
MaeIII GTNAC 1 cut(s) 649
MalI GATC 6 cut(s) 219, 225, 230, 246, 342, 531
MbiI CCGCTC 2 cut(s) 270, 496
MboI GATC 6 cut(s) 217, 223, 228, 244, 340, 529
MboII GAAGA 8 cut(s) 33, 214, 397, 414, 448, 604, 647, 668
MfeI CAATTG 1 cut(s) 543
MluCI AATT 5 cut(s) 371, 440, 482, 543, 708
MlyI GAGTC 6 cut(s) 29, 182, 199, 428, 634, 755
MmeI TCCRAC 2 cut(s) 166, 789
MspA1I CMGCKG 1 cut(s) 919
MspI CCGG 5 cut(s) 65, 78, 101, 170, 647
MspR9I CCNGG 3 cut(s) 101, 149, 197
MunI CAATTG 1 cut(s) 543
Mva1269I GAATGC 2 cut(s) 601, 631
MvaI CCWGG 2 cut(s) 149, 197
MvnI CGCG 1 cut(s) 727
MwoI GCNNNNNNNGC 6 cut(s) 74, 306, 356, 516, 675, 733
NciI CCSGG 1 cut(s) 101
NdeII GATC 6 cut(s) 217, 223, 228, 244, 340, 529
NlaIII CATG 3 cut(s) 91, 779, 907
NlaIV GGNNCC 1 cut(s) 190
NmeAIII GCCGAG 3 cut(s) 151, 495, 805
NruI TCGCGA 1 cut(s) 727
NspI RCATGY 1 cut(s) 779
NspV TTCGAA 1 cut(s) 383
PaeI GCATGC 1 cut(s) 779
PaeR7I CTCGAG 1 cut(s) 763
PcsI WCGNNNNNNNCGW 4 cut(s) 12, 15, 237, 431
PctI GAATGC 2 cut(s) 601, 631
PfeI GAWTC 7 cut(s) 47, 81, 362, 461, 524, 713, 722
PfoI TCCNGGA 1 cut(s) 99
PinAI ACCGGT 1 cut(s) 646
PkrI GCNGC 7 cut(s) 124, 140, 272, 299, 498, 562, 735
Ple19I CGATCG 1 cut(s) 247
PleI GAGTC 6 cut(s) 29, 181, 199, 427, 634, 755
PpsI GAGTC 6 cut(s) 29, 181, 199, 427, 634, 755
Psp6I CCWGG 2 cut(s) 147, 195
PspGI CCWGG 2 cut(s) 147, 195
PspN4I GGNNCC 1 cut(s) 190
PspXI VCTCGAGB 1 cut(s) 763
PvuI CGATCG 1 cut(s) 247
PvuII CAGCTG 1 cut(s) 919
RruI TCGCGA 1 cut(s) 727
RsaI GTAC 1 cut(s) 31
RsaNI GTAC 1 cut(s) 30
SatI GCNGC 7 cut(s) 123, 139, 271, 298, 497, 561, 734
Sau3AI GATC 6 cut(s) 217, 223, 228, 244, 340, 529
SchI GAGTC 6 cut(s) 29, 182, 199, 428, 634, 755
ScrFI CCNGG 3 cut(s) 101, 149, 197
SfaNI GCATC 3 cut(s) 109, 325, 547
SfcI CTRYAG 1 cut(s) 920
Sfr274I CTCGAG 1 cut(s) 763
SfuI TTCGAA 1 cut(s) 383
SlaI CTCGAG 1 cut(s) 763
SmlI CTYRAG 1 cut(s) 763
SmoI CTYRAG 1 cut(s) 763
SphI GCATGC 1 cut(s) 779
Sse9I AATT 5 cut(s) 371, 440, 482, 543, 708
SspMI CTAG 1 cut(s) 801
StyD4I CCNGG 3 cut(s) 99, 147, 195
TaaI ACNGT 4 cut(s) 107, 314, 432, 851
TaiI ACGT 2 cut(s) 156, 826
TaqI TCGA 9 cut(s) 111, 159, 216, 255, 383, 398, 434, 764, 898
TaqII GACCGA 1 cut(s) 506
TasI AATT 5 cut(s) 371, 440, 482, 543, 708
TauI GCSGC 4 cut(s) 273, 300, 499, 563
TfiI GAWTC 7 cut(s) 47, 81, 362, 461, 524, 713, 722
TseI GCWGC 3 cut(s) 122, 138, 733
XceI RCATGY 1 cut(s) 779
XhoI CTCGAG 1 cut(s) 763
XspI CTAG 1 cut(s) 801
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.