Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0014747

Physical Location & Seq

Genomic Coordinates Forward (+)

47937143 .. 47938273

Gene Structure 1131 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003388

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGACGACGCCGACGACGACTACTCCAGTACCGACTCGTCTTCCGATTCCAGTACTACTATTCCGGCAGCCTCCGCCGGAATCGTCATGCTCTCTCTCCCGGACAGTTTCGATGAGGATGCAGCCGAGGACAAGAGCAGCGCCGACCAGGACGTTTTCGAGACCCCGCCGGAGTCCTCGCTCGTCGGAACCTCCCAGGAGAAGACTCCCTTGCTCGATCTTGATCAGATCGGCGACAACGACGACGACGATCGTGATTTCGAGGGAGTTGGAGATATAGGAGATGGGAGCGGCGTCATCGTGGCCGTCGGTGGTTGCGGCGAGGAAGGCGACGGTGCTGTGGATTTGGGGCGGGATGCTGATCTGGTGACTTCGGAGGCGGAATCGGTGGAATTTAGGGTTTCGAAGAGGGATTTGTCGATGGAAGGGAGTTCGGAGGAGTCTTCGCCGCCGTCGAAGAAATTGAGGGTTTCGGAGCAGGAATCGGGGAAATCAGAGGAGCAATTGGAGACCGAGCGGCTTAGTCTGAGCAACCTCGGCTCTGATTCCGATCAAACTCTCGAAATTGCAGGGGATGATGCCAAATCAGTTGAGGAAAGCTCAGGAAAGAAGAATGCTGAGTATTCAGGCAGCGAGAGTGAGAATGCTACTGAAGAGACTCAACAGGTCACTGAAGAAAGCGGTAGCCCATCCAGCGTGGAGTATTCCTATCAGGAAGGCAGTGAAATTGATTCCGGAGCCGGAGATTCTCGAGTGCTTCGAGTGCTGCCTCTATCCTTCTGCCCACCAGCAGACTCGAGTGAGAGGCAGGCCGAGGAGGGGCATAGCTGGTCTAGTCTGTTGGAGATGTTGAAACGTAGTGGCGGCTGGAAGAAGGGTTTTGATTCTTCTGAATTGGACGAAACCGCATTCACAAGAAACGAAGAAGATGAGGGAAGGATTTCGGGTTGGAATGCTGGTTTGCTAATGCTGGGTTTTGAGGACAGTCTTGGAAGAGCAGCAGCGACTGAAAATCCCAGGTTTTTGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

344

Amino Acids

36.46

Weight (kDa)

4.05

Isoelectric Point (pI)

58.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014747)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g20250 FvH4_5g20250
prunus_persica	Prupe.5G058200_v2.0.a1
pyrus_communis	pycom04g04580
rosa_laevigata	RLG00000003388
rosa_multiflora	Rmu_sc0009317.1_g000001 Rmu_ssc0000004.1_g000025
rosa_roxburghii	Rroxscaffold_3G00252470
rosa_rugosa	Rorug07G0089700
rosa_samantha	Rh1CG080200 Rh1DG086700 Rh3CG227900 Rh7AG220400 Rh7BG216500 Rh7CG233200 Rh7DG227300
rosa_wichuraiana	Rw7G019050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	291, 517
AccIII	TCCGGA	1 cut(s)	734
AcoI	YGGCCR	1 cut(s)	303
AcsI	RAATTY	1 cut(s)	392
AcuI	CTGAAG	2 cut(s)	672, 693
AcyI	GRCGYC	2 cut(s)	9, 294
AfaI	GTAC	2 cut(s)	31, 55
AfiI	CCNNNNNNNGG	1 cut(s)	819
AgsI	TTSAA	2 cut(s)	853, 1027
AjnI	CCWGG	3 cut(s)	147, 195, 1016
AluBI	AGCT	2 cut(s)	600, 828
AluI	AGCT	2 cut(s)	600, 828
Alw26I	GTCTC	3 cut(s)	155, 503, 650
AlwNI	CAGNNNCTG	1 cut(s)	1007
Ama87I	CYCGRG	2 cut(s)	750, 796
Aor13HI	TCCGGA	1 cut(s)	734
AoxI	GGCC	2 cut(s)	303, 810
ApeKI	GCWGC	7 cut(s)	68, 122, 138, 630, 766, 998, 1001
ApoI	RAATTY	1 cut(s)	392
Asp700I	GAANNNNTTC	1 cut(s)	940
AspLEI	GCGC	1 cut(s)	143
AsuC2I	CCSGG	1 cut(s)	101
AsuHPI	GGTGA	1 cut(s)	379
AsuII	TTCGAA	1 cut(s)	404
AvaI	CYCGRG	2 cut(s)	750, 796
BaeI	ACNNNNGTAYC	2 cut(s)	13, 46
BbsI	GAAGAC	3 cut(s)	33, 209, 435
BbvI	GCAGC	7 cut(s)	80, 134, 150, 642, 753, 1010, 1013
BccI	CCATC	3 cut(s)	278, 415, 697
BceAI	ACGGC	2 cut(s)	290, 436
BcgI	CGANNNNNNTGC	2 cut(s)	101, 135
BciT130I	CCWGG	3 cut(s)	149, 197, 1018
BclI	TGATCA	1 cut(s)	223
BcnI	CCSGG	1 cut(s)	101
BcoDI	GTCTC	3 cut(s)	155, 503, 650
BfaI	CTAG	1 cut(s)	834
BfoI	RGCGCY	1 cut(s)	144
BmcAI	AGTACT	1 cut(s)	55
Bme1390I	CCNGG	4 cut(s)	101, 149, 197, 1018
BmeT110I	CYCGRG	2 cut(s)	750, 796
BmiI	GGNNCC	2 cut(s)	190, 739
BmrFI	CCNGG	4 cut(s)	101, 149, 197, 1018
BmsI	GCATC	3 cut(s)	109, 346, 568
BpiI	GAAGAC	3 cut(s)	33, 209, 435
BplI	GAGNNNNNCTC	2 cut(s)	584, 616
BpmI	CTGGAG	1 cut(s)	10
Bpu10I	CCTNAGC	1 cut(s)	601
Bpu14I	TTCGAA	1 cut(s)	404
BpuMI	CCSGG	1 cut(s)	101
BsaBI	GATNNNNATC	3 cut(s)	222, 360, 549
BsaHI	GRCGYC	2 cut(s)	9, 294
BsaI	GGTCTC	2 cut(s)	155, 503
BsaJI	CCNNGG	5 cut(s)	126, 195, 535, 813, 1016
BsaWI	WCCGGW	1 cut(s)	734
BsaXI	ACNNNNNCTCC	2 cut(s)	8, 38
Bsc4I	CCNNNNNNNGG	1 cut(s)	819
Bse1I	ACTGG	2 cut(s)	27, 51
Bse8I	GATNNNNATC	3 cut(s)	222, 360, 549
BseAI	TCCGGA	1 cut(s)	734
BseBI	CCWGG	3 cut(s)	149, 197, 1018
BseDI	CCNNGG	5 cut(s)	126, 195, 535, 813, 1016
BseGI	GGATG	4 cut(s)	124, 361, 580, 689
BseJI	GATNNNNATC	3 cut(s)	222, 360, 549
BseLI	CCNNNNNNNGG	1 cut(s)	819
BseMII	CTCAG	3 cut(s)	518, 609, 615
BseNI	ACTGG	2 cut(s)	27, 51
BseRI	GAGGAG	3 cut(s)	452, 512, 830
BseXI	GCAGC	7 cut(s)	80, 134, 150, 642, 753, 1010, 1013
BseYI	CCCAGC	1 cut(s)	970
Bsh1285I	CGRYCG	1 cut(s)	253
BshFI	GGCC	2 cut(s)	305, 812
BsiEI	CGRYCG	1 cut(s)	253
BsiHKCI	CYCGRG	2 cut(s)	750, 796
BsiSI	CCGG	6 cut(s)	65, 78, 101, 170, 735, 741
BslI	CCNNNNNNNGG	1 cut(s)	819
BsmAI	GTCTC	3 cut(s)	155, 503, 650
BsmI	GAATGC	4 cut(s)	619, 649, 908, 958
BsnI	GGCC	2 cut(s)	305, 812
Bso31I	GGTCTC	2 cut(s)	155, 503
BsoBI	CYCGRG	2 cut(s)	750, 796
Bsp119I	TTCGAA	1 cut(s)	404
Bsp13I	TCCGGA	1 cut(s)	734
Bsp143I	GATC	6 cut(s)	217, 223, 228, 250, 361, 550
BspANI	GGCC	2 cut(s)	305, 812
BspCNI	CTCAG	3 cut(s)	519, 610, 614
BspEI	TCCGGA	1 cut(s)	734
BspLI	GGNNCC	2 cut(s)	190, 739
BspQI	GCTCTTC	1 cut(s)	988
BspT104I	TTCGAA	1 cut(s)	404
BspTNI	GGTCTC	2 cut(s)	155, 503
BsrBI	CCGCTC	2 cut(s)	291, 517
BsrI	ACTGG	2 cut(s)	27, 51
BssECI	CCNNGG	5 cut(s)	126, 195, 535, 813, 1016
BssMI	GATC	6 cut(s)	217, 223, 228, 250, 361, 550
BssNI	GRCGYC	2 cut(s)	9, 294
Bst2UI	CCWGG	3 cut(s)	149, 197, 1018
Bst4CI	ACNGT	3 cut(s)	107, 335, 986
Bst6I	CTCTTC	3 cut(s)	401, 648, 988
BstACI	GRCGYC	2 cut(s)	9, 294
BstBI	TTCGAA	1 cut(s)	404
BstC8I	GCNNGC	1 cut(s)	810
BstDEI	CTNAG	4 cut(s)	521, 527, 601, 618
BstF5I	GGATG	4 cut(s)	124, 361, 580, 689
BstH2I	RGCGCY	1 cut(s)	144
BstHHI	GCGC	1 cut(s)	143
BstKTI	GATC	6 cut(s)	220, 226, 231, 253, 364, 553
BstMAI	GTCTC	3 cut(s)	155, 503, 650
BstMBI	GATC	6 cut(s)	217, 223, 228, 250, 361, 550
BstMCI	CGRYCG	1 cut(s)	253
BstMWI	GCNNNNNNNGC	5 cut(s)	74, 327, 537, 693, 763
BstNI	CCWGG	3 cut(s)	149, 197, 1018
BstSCI	CCNGG	4 cut(s)	99, 147, 195, 1016
BstV1I	GCAGC	7 cut(s)	80, 134, 150, 642, 753, 1010, 1013
BstV2I	GAAGAC	3 cut(s)	33, 209, 435
BsuRI	GGCC	2 cut(s)	305, 812
BtsCI	GGATG	4 cut(s)	124, 361, 580, 689
BtsI	GCAGTG	1 cut(s)	727
BtsIMutI	CAGTG	2 cut(s)	669, 727
Cac8I	GCNNGC	1 cut(s)	810
CaiI	CAGNNNCTG	1 cut(s)	1007
CfoI	GCGC	1 cut(s)	143
CseI	GACGC	2 cut(s)	17, 283
Csp6I	GTAC	2 cut(s)	30, 54
CviAII	CATG	1 cut(s)	88
CviQI	GTAC	2 cut(s)	30, 54
DdeI	CTNAG	4 cut(s)	521, 527, 601, 618
DpnI	GATC	6 cut(s)	219, 225, 230, 252, 363, 552
DpnII	GATC	6 cut(s)	217, 223, 228, 250, 361, 550
EaeI	YGGCCR	1 cut(s)	303
Eam1104I	CTCTTC	3 cut(s)	401, 648, 988
EarI	CTCTTC	3 cut(s)	401, 648, 988
EciI	GGCGGA	2 cut(s)	64, 395
Eco31I	GGTCTC	2 cut(s)	155, 503
Eco57I	CTGAAG	2 cut(s)	672, 693
Eco88I	CYCGRG	2 cut(s)	750, 796
EcoRII	CCWGG	3 cut(s)	147, 195, 1016
FaeI	CATG	1 cut(s)	91
FaiI	YATR	3 cut(s)	89, 278, 825
FalI	AAGNNNNNCTT	2 cut(s)	194, 226
FatI	CATG	1 cut(s)	87
FauI	CCCGC	2 cut(s)	174, 345
FbaI	TGATCA	1 cut(s)	223
FokI	GGATG	4 cut(s)	131, 368, 587, 676
FspBI	CTAG	1 cut(s)	834
GlaI	GCGC	1 cut(s)	142
GsaI	CCCAGC	1 cut(s)	974
GsuI	CTGGAG	1 cut(s)	10
HaeII	RGCGCY	1 cut(s)	144
HaeIII	GGCC	2 cut(s)	305, 812
HapII	CCGG	6 cut(s)	65, 78, 101, 170, 735, 741
HgaI	GACGC	2 cut(s)	17, 283
HhaI	GCGC	1 cut(s)	143
Hin1I	GRCGYC	2 cut(s)	9, 294
Hin1II	CATG	1 cut(s)	91
Hin6I	GCGC	1 cut(s)	141
HinP1I	GCGC	1 cut(s)	141
HpaII	CCGG	6 cut(s)	65, 78, 101, 170, 735, 741
HphI	GGTGA	1 cut(s)	379
Hpy188III	TCNNGA	8 cut(s)	160, 221, 254, 560, 603, 713, 735, 750
HpyAV	CCTTC	6 cut(s)	320, 419, 710, 787, 868, 930
HpyCH4III	ACNGT	3 cut(s)	107, 335, 986
HpyCH4IV	ACGT	2 cut(s)	153, 856
HpyCH4V	TGCA	2 cut(s)	122, 569
HpyF10VI	GCNNNNNNNGC	5 cut(s)	74, 327, 537, 693, 763
HpyF3I	CTNAG	4 cut(s)	521, 527, 601, 618
HpySE526I	ACGT	2 cut(s)	153, 856
Hsp92I	GRCGYC	2 cut(s)	9, 294
Hsp92II	CATG	1 cut(s)	91
HspAI	GCGC	1 cut(s)	141
Kpn2I	TCCGGA	1 cut(s)	734
Ksp22I	TGATCA	1 cut(s)	223
Kzo9I	GATC	6 cut(s)	217, 223, 228, 250, 361, 550
LguI	GCTCTTC	1 cut(s)	988
LmnI	GCTCC	4 cut(s)	288, 475, 499, 737
Lsp1109I	GCAGC	7 cut(s)	80, 134, 150, 642, 753, 1010, 1013
LweI	GCATC	3 cut(s)	109, 346, 568
MaeI	CTAG	1 cut(s)	834
MaeII	ACGT	2 cut(s)	153, 856
MaeIII	GTNAC	2 cut(s)	367, 667
MalI	GATC	6 cut(s)	219, 225, 230, 252, 363, 552
MbiI	CCGCTC	2 cut(s)	291, 517
MboI	GATC	6 cut(s)	217, 223, 228, 250, 361, 550
MfeI	CAATTG	1 cut(s)	503
MluCI	AATT	6 cut(s)	392, 461, 503, 564, 726, 893
MlyI	GAGTC	6 cut(s)	29, 182, 199, 449, 652, 788
MmeI	TCCRAC	4 cut(s)	166, 250, 822, 929
MroI	TCCGGA	1 cut(s)	734
MroXI	GAANNNNTTC	1 cut(s)	940
MspI	CCGG	6 cut(s)	65, 78, 101, 170, 735, 741
MspR9I	CCNGG	4 cut(s)	101, 149, 197, 1018
MunI	CAATTG	1 cut(s)	503
Mva1269I	GAATGC	4 cut(s)	619, 649, 908, 958
MvaI	CCWGG	3 cut(s)	149, 197, 1018
MwoI	GCNNNNNNNGC	5 cut(s)	74, 327, 537, 693, 763
NciI	CCSGG	1 cut(s)	101
NdeII	GATC	6 cut(s)	217, 223, 228, 250, 361, 550
NlaIII	CATG	1 cut(s)	91
NlaIV	GGNNCC	2 cut(s)	190, 739
NmeAIII	GCCGAG	3 cut(s)	151, 516, 838
NmuCI	GTSAC	2 cut(s)	367, 667
NspV	TTCGAA	1 cut(s)	404
PaeR7I	CTCGAG	2 cut(s)	750, 796
PciSI	GCTCTTC	1 cut(s)	988
PcsI	WCGNNNNNNNCGW	6 cut(s)	12, 15, 237, 246, 452, 757
PctI	GAATGC	4 cut(s)	619, 649, 908, 958
PdmI	GAANNNNTTC	1 cut(s)	940
PfeI	GAWTC	8 cut(s)	47, 81, 383, 482, 545, 731, 746, 884
PfoI	TCCNGGA	1 cut(s)	99
Ple19I	CGATCG	1 cut(s)	253
PleI	GAGTC	6 cut(s)	29, 181, 199, 448, 652, 788
PpsI	GAGTC	6 cut(s)	29, 181, 199, 448, 652, 788
Psp6I	CCWGG	3 cut(s)	147, 195, 1016
PspFI	CCCAGC	1 cut(s)	970
PspGI	CCWGG	3 cut(s)	147, 195, 1016
PspN4I	GGNNCC	2 cut(s)	190, 739
PspXI	VCTCGAGB	1 cut(s)	796
PstNI	CAGNNNCTG	1 cut(s)	1007
PvuI	CGATCG	1 cut(s)	253
RsaI	GTAC	2 cut(s)	31, 55
RsaNI	GTAC	2 cut(s)	30, 54
SapI	GCTCTTC	1 cut(s)	988
Sau3AI	GATC	6 cut(s)	217, 223, 228, 250, 361, 550
ScaI	AGTACT	1 cut(s)	55
SchI	GAGTC	6 cut(s)	29, 182, 199, 449, 652, 788
ScrFI	CCNGG	4 cut(s)	101, 149, 197, 1018
SetI	ASST	8 cut(s)	156, 194, 537, 602, 669, 830, 859, 1022
SfaNI	GCATC	3 cut(s)	109, 346, 568
Sfr274I	CTCGAG	2 cut(s)	750, 796
SfuI	TTCGAA	1 cut(s)	404
SlaI	CTCGAG	2 cut(s)	750, 796
SmlI	CTYRAG	2 cut(s)	750, 796
SmoI	CTYRAG	2 cut(s)	750, 796
Sse9I	AATT	6 cut(s)	392, 461, 503, 564, 726, 893
SspMI	CTAG	1 cut(s)	834
StyD4I	CCNGG	4 cut(s)	99, 147, 195, 1016
TaaI	ACNGT	3 cut(s)	107, 335, 986
TaiI	ACGT	2 cut(s)	156, 859
TaqII	GACCGA	1 cut(s)	527
TasI	AATT	6 cut(s)	392, 461, 503, 564, 726, 893
TatI	WGTACW	1 cut(s)	53
TauI	GCSGC	5 cut(s)	294, 321, 451, 520, 867
TfiI	GAWTC	8 cut(s)	47, 81, 383, 482, 545, 731, 746, 884
TscAI	CASTG	2 cut(s)	676, 727
TseFI	GTSAC	2 cut(s)	367, 667
TseI	GCWGC	7 cut(s)	68, 122, 138, 630, 766, 998, 1001
Tsp45I	GTSAC	2 cut(s)	367, 667
TspRI	CASTG	2 cut(s)	676, 727
XapI	RAATTY	1 cut(s)	392
XhoI	CTCGAG	2 cut(s)	750, 796
XmnI	GAANNNNTTC	1 cut(s)	940
XspI	CTAG	1 cut(s)	834
ZrmI	AGTACT	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.