Rh7BG216500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0014747
Physical Location & Seq
Reverse (-)
18499597 .. 18500460
864 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG216500.1

Sequence Viewer

Length: 864 bp
ATGCTCTCTCTCCCGGACAGTTTCGATGAGGATGCAGCCGAGGACAAGAGCAGCGCCGACCAGGACGTTTTCGAGACCCCGCCGGAGTCCGCGCTCGTCGGAACCTCCCAGGAGAAGACTCCCTTGCTCGATCTTGATCAGATCGGCGATGACGACGACGACGACGACGATGATCGTGATTTCGAGGGAGTTGGAGATATAGGAGATGGGAGCGGCGTCATCGTGGCCGTCGGTGGTTGCGGTGAGGAAGGCGACGGCGCTTTGGATTTGGGGCGGGATGCTGATCTGGTGACTTCGGAGGCGGAATCGGTGGAATTTAGGGTTTCAAAGAGGGATTTGTCGATGGAAGGGAGTTCGGAGGAGTCTTCGCCGCAGTCAAAGAAATTGAGGGTTTCGGAGCAGGAATCGGTGAAATCAGAGGAGGAATTGGAGACCGAGCGGCTTAGTCTGAGCAACCTCGGCTCTGATTCCGATCAAACTCTTGAAATTGCAGGGGATGATGCCAAATCAGTTGAGGAAAGCTCAGGAAAGAAGAATGCTGAGTATTCAGGCAGCGAGAGTGAGAATGCTACTGAAGAGACTCAACAGGTTACTGAAGAAAGCGGTAGCCCATCCAGTGTGGAGTATTCCTATCAGGAAGGCGGTGAAATTGATTCTGGAGATTTGCGAGTGCTGCCTCTATCCTTCTGCCCACCAGCGGACTCGAGTGAGAGGCATGCCGAGGAGGGGCATAGCTGGTCTAGTCTGTTGGAGATGTTGAAACGTGTGAGAGAAATAACTCGTCAAGACTGTAAAAATGAGGTTGATAAATGTAGCTTTGTGGAGATAGCTAAGCGTCGCGGCATGAATTTCCCTCGGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

287

Amino Acids

31.1

Weight (kDa)

4.06

Isoelectric Point (pI)

59.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 213, 439
AccII CGCG 2 cut(s) 92, 840
AcoI YGGCCR 1 cut(s) 225
AcsI RAATTY 2 cut(s) 314, 847
AcuI CTGAAG 2 cut(s) 594, 615
AcyI GRCGYC 1 cut(s) 216
AfiI CCNNNNNNNGG 2 cut(s) 697, 726
AflIII ACRYGT 1 cut(s) 763
AgsI TTSAA 3 cut(s) 327, 485, 760
AjnI CCWGG 2 cut(s) 60, 108
AluBI AGCT 4 cut(s) 522, 735, 816, 830
AluI AGCT 4 cut(s) 522, 735, 816, 830
Alw26I GTCTC 3 cut(s) 68, 425, 572
Ama87I CYCGRG 1 cut(s) 703
AoxI GGCC 1 cut(s) 225
ApeKI GCWGC 4 cut(s) 35, 51, 552, 673
ApoI RAATTY 2 cut(s) 314, 847
AspLEI GCGC 3 cut(s) 56, 94, 260
AsuC2I CCSGG 1 cut(s) 14
AsuHPI GGTGA 4 cut(s) 254, 301, 421, 656
AvaI CYCGRG 1 cut(s) 703
BbsI GAAGAC 2 cut(s) 122, 357
BbvI GCAGC 4 cut(s) 47, 63, 564, 660
BccI CCATC 3 cut(s) 200, 337, 619
BceAI ACGGC 2 cut(s) 212, 271
BcgI CGANNNNNNTGC 2 cut(s) 14, 48
BciT130I CCWGG 2 cut(s) 62, 110
BclI TGATCA 1 cut(s) 136
BcnI CCSGG 1 cut(s) 14
BcoDI GTCTC 3 cut(s) 68, 425, 572
BfaI CTAG 1 cut(s) 741
BfmI CTRYAG 1 cut(s) 860
BfoI RGCGCY 2 cut(s) 57, 261
BisI GCNGC 8 cut(s) 36, 52, 214, 371, 440, 553, 674, 841
BlpI GCTNAGC 1 cut(s) 831
BlsI GCNGC 8 cut(s) 37, 53, 215, 372, 441, 554, 675, 842
Bme1390I CCNGG 3 cut(s) 14, 62, 110
BmeT110I CYCGRG 1 cut(s) 703
BmiI GGNNCC 1 cut(s) 103
BmrFI CCNGG 3 cut(s) 14, 62, 110
BmsI GCATC 3 cut(s) 22, 268, 490
BpiI GAAGAC 2 cut(s) 122, 357
BplI GAGNNNNNCTC 2 cut(s) 506, 538
BpmI CTGGAG 1 cut(s) 678
Bpu10I CCTNAGC 1 cut(s) 523
Bpu1102I GCTNAGC 1 cut(s) 831
BpuMI CCSGG 1 cut(s) 14
BsaBI GATNNNNATC 3 cut(s) 135, 282, 471
BsaHI GRCGYC 1 cut(s) 216
BsaI GGTCTC 2 cut(s) 68, 425
BsaJI CCNNGG 5 cut(s) 39, 108, 457, 720, 854
Bsc4I CCNNNNNNNGG 2 cut(s) 697, 726
Bse1I ACTGG 1 cut(s) 615
Bse8I GATNNNNATC 3 cut(s) 135, 282, 471
BseBI CCWGG 2 cut(s) 62, 110
BseDI CCNNGG 5 cut(s) 39, 108, 457, 720, 854
BseGI GGATG 4 cut(s) 37, 283, 502, 611
BseJI GATNNNNATC 3 cut(s) 135, 282, 471
BseLI CCNNNNNNNGG 2 cut(s) 697, 726
BseMII CTCAG 3 cut(s) 440, 531, 537
BseNI ACTGG 1 cut(s) 615
BseRI GAGGAG 3 cut(s) 374, 434, 737
BseXI GCAGC 4 cut(s) 47, 63, 564, 660
Bsh1236I CGCG 2 cut(s) 92, 840
BshFI GGCC 1 cut(s) 227
BsiHKCI CYCGRG 1 cut(s) 703
BsiSI CCGG 2 cut(s) 14, 83
BslI CCNNNNNNNGG 2 cut(s) 697, 726
BsmAI GTCTC 3 cut(s) 68, 425, 572
BsmI GAATGC 2 cut(s) 541, 571
BsnI GGCC 1 cut(s) 227
Bso31I GGTCTC 2 cut(s) 68, 425
BsoBI CYCGRG 1 cut(s) 703
Bsp143I GATC 6 cut(s) 130, 136, 141, 172, 283, 472
Bsp1720I GCTNAGC 1 cut(s) 831
BspANI GGCC 1 cut(s) 227
BspCNI CTCAG 3 cut(s) 441, 532, 536
BspFNI CGCG 2 cut(s) 92, 840
BspLI GGNNCC 1 cut(s) 103
BspTNI GGTCTC 2 cut(s) 68, 425
BsrBI CCGCTC 2 cut(s) 213, 439
BsrI ACTGG 1 cut(s) 615
BssECI CCNNGG 5 cut(s) 39, 108, 457, 720, 854
BssMI GATC 6 cut(s) 130, 136, 141, 172, 283, 472
BssNI GRCGYC 1 cut(s) 216
Bst2UI CCWGG 2 cut(s) 62, 110
Bst4CI ACNGT 2 cut(s) 20, 791
Bst6I CTCTTC 1 cut(s) 570
BstACI GRCGYC 1 cut(s) 216
BstC8I GCNNGC 1 cut(s) 717
BstDEI CTNAG 5 cut(s) 443, 449, 523, 540, 831
BstF5I GGATG 4 cut(s) 37, 283, 502, 611
BstFNI CGCG 2 cut(s) 92, 840
BstH2I RGCGCY 2 cut(s) 57, 261
BstHHI GCGC 3 cut(s) 56, 94, 260
BstKTI GATC 6 cut(s) 133, 139, 144, 175, 286, 475
BstMAI GTCTC 3 cut(s) 68, 425, 572
BstMBI GATC 6 cut(s) 130, 136, 141, 172, 283, 472
BstMWI GCNNNNNNNGC 2 cut(s) 459, 673
BstNI CCWGG 2 cut(s) 62, 110
BstNSI RCATGY 1 cut(s) 719
BstSCI CCNGG 3 cut(s) 12, 60, 108
BstSFI CTRYAG 1 cut(s) 860
BstUI CGCG 2 cut(s) 92, 840
BstV1I GCAGC 4 cut(s) 47, 63, 564, 660
BstV2I GAAGAC 2 cut(s) 122, 357
BsuRI GGCC 1 cut(s) 227
BtgZI GCGATG 1 cut(s) 162
BtsCI GGATG 4 cut(s) 37, 283, 502, 611
BtsIMutI CAGTG 1 cut(s) 622
Cac8I GCNNGC 1 cut(s) 717
CfoI GCGC 3 cut(s) 56, 94, 260
CseI GACGC 2 cut(s) 205, 824
CviAII CATG 2 cut(s) 716, 844
DdeI CTNAG 5 cut(s) 443, 449, 523, 540, 831
DpnI GATC 6 cut(s) 132, 138, 143, 174, 285, 474
DpnII GATC 6 cut(s) 130, 136, 141, 172, 283, 472
EaeI YGGCCR 1 cut(s) 225
Eam1104I CTCTTC 1 cut(s) 570
EarI CTCTTC 1 cut(s) 570
EciI GGCGGA 1 cut(s) 317
Eco31I GGTCTC 2 cut(s) 68, 425
Eco57I CTGAAG 2 cut(s) 594, 615
Eco88I CYCGRG 1 cut(s) 703
EcoRII CCWGG 2 cut(s) 60, 108
FaeI CATG 2 cut(s) 719, 847
FaiI YATR 4 cut(s) 200, 717, 732, 845
FalI AAGNNNNNCTT 2 cut(s) 107, 139
FatI CATG 2 cut(s) 715, 843
FauI CCCGC 2 cut(s) 87, 267
FbaI TGATCA 1 cut(s) 136
Fnu4HI GCNGC 8 cut(s) 36, 52, 214, 371, 440, 553, 674, 841
FokI GGATG 4 cut(s) 44, 290, 509, 598
Fsp4HI GCNGC 8 cut(s) 36, 52, 214, 371, 440, 553, 674, 841
FspBI CTAG 1 cut(s) 741
GlaI GCGC 3 cut(s) 55, 93, 259
GluI GCNGC 8 cut(s) 36, 52, 214, 371, 440, 553, 674, 841
GsuI CTGGAG 1 cut(s) 678
HaeII RGCGCY 2 cut(s) 57, 261
HaeIII GGCC 1 cut(s) 227
HapII CCGG 2 cut(s) 14, 83
HgaI GACGC 2 cut(s) 205, 824
HhaI GCGC 3 cut(s) 56, 94, 260
Hin1I GRCGYC 1 cut(s) 216
Hin1II CATG 2 cut(s) 719, 847
Hin6I GCGC 3 cut(s) 54, 92, 258
HinP1I GCGC 3 cut(s) 54, 92, 258
HinfI GANTC 9 cut(s) 86, 118, 305, 362, 404, 467, 580, 653, 701
HpaII CCGG 2 cut(s) 14, 83
HphI GGTGA 4 cut(s) 254, 301, 421, 656
Hpy188I TCNGA 9 cut(s) 101, 141, 298, 358, 397, 418, 450, 466, 472
Hpy188III TCNNGA 8 cut(s) 73, 134, 176, 482, 525, 635, 657, 785
Hpy99I CGWCG 9 cut(s) 101, 158, 161, 164, 167, 170, 233, 257, 840
HpyAV CCTTC 4 cut(s) 242, 341, 632, 694
HpyCH4III ACNGT 2 cut(s) 20, 791
HpyCH4IV ACGT 2 cut(s) 66, 763
HpyCH4V TGCA 2 cut(s) 35, 491
HpyF10VI GCNNNNNNNGC 2 cut(s) 459, 673
HpyF3I CTNAG 5 cut(s) 443, 449, 523, 540, 831
HpySE526I ACGT 2 cut(s) 66, 763
Hsp92I GRCGYC 1 cut(s) 216
Hsp92II CATG 2 cut(s) 719, 847
HspAI GCGC 3 cut(s) 54, 92, 258
Ksp22I TGATCA 1 cut(s) 136
Kzo9I GATC 6 cut(s) 130, 136, 141, 172, 283, 472
LmnI GCTCC 2 cut(s) 210, 397
Lsp1109I GCAGC 4 cut(s) 47, 63, 564, 660
LweI GCATC 3 cut(s) 22, 268, 490
MaeI CTAG 1 cut(s) 741
MaeII ACGT 2 cut(s) 66, 763
MaeIII GTNAC 2 cut(s) 289, 589
MalI GATC 6 cut(s) 132, 138, 143, 174, 285, 474
MbiI CCGCTC 2 cut(s) 213, 439
MboI GATC 6 cut(s) 130, 136, 141, 172, 283, 472
MboII GAAGA 5 cut(s) 127, 357, 544, 587, 608
MluCI AATT 6 cut(s) 314, 383, 425, 486, 648, 847
MlyI GAGTC 5 cut(s) 95, 112, 371, 574, 695
MmeI TCCRAC 3 cut(s) 79, 172, 729
MspA1I CMGCKG 1 cut(s) 698
MspI CCGG 2 cut(s) 14, 83
MspR9I CCNGG 3 cut(s) 14, 62, 110
Mva1269I GAATGC 2 cut(s) 541, 571
MvaI CCWGG 2 cut(s) 62, 110
MvnI CGCG 2 cut(s) 92, 840
MwoI GCNNNNNNNGC 2 cut(s) 459, 673
NciI CCSGG 1 cut(s) 14
NdeII GATC 6 cut(s) 130, 136, 141, 172, 283, 472
NlaIII CATG 2 cut(s) 719, 847
NlaIV GGNNCC 1 cut(s) 103
NmeAIII GCCGAG 4 cut(s) 64, 438, 745, 835
NmuCI GTSAC 1 cut(s) 289
NspI RCATGY 1 cut(s) 719
PaeI GCATGC 1 cut(s) 719
PaeR7I CTCGAG 1 cut(s) 703
PcsI WCGNNNNNNNCGW 4 cut(s) 150, 159, 162, 165
PctI GAATGC 2 cut(s) 541, 571
PfeI GAWTC 4 cut(s) 305, 404, 467, 653
PfoI TCCNGGA 1 cut(s) 12
PkrI GCNGC 8 cut(s) 37, 53, 215, 372, 441, 554, 675, 842
PleI GAGTC 5 cut(s) 94, 112, 370, 574, 695
PpsI GAGTC 5 cut(s) 94, 112, 370, 574, 695
Psp6I CCWGG 2 cut(s) 60, 108
PspGI CCWGG 2 cut(s) 60, 108
PspN4I GGNNCC 1 cut(s) 103
PspXI VCTCGAGB 1 cut(s) 703
SatI GCNGC 8 cut(s) 36, 52, 214, 371, 440, 553, 674, 841
Sau3AI GATC 6 cut(s) 130, 136, 141, 172, 283, 472
SchI GAGTC 5 cut(s) 95, 112, 371, 574, 695
ScrFI CCNGG 3 cut(s) 14, 62, 110
SfaNI GCATC 3 cut(s) 22, 268, 490
SfcI CTRYAG 1 cut(s) 860
Sfr274I CTCGAG 1 cut(s) 703
SlaI CTCGAG 1 cut(s) 703
SmlI CTYRAG 1 cut(s) 703
SmoI CTYRAG 1 cut(s) 703
SphI GCATGC 1 cut(s) 719
Sse9I AATT 6 cut(s) 314, 383, 425, 486, 648, 847
SspMI CTAG 1 cut(s) 741
StyD4I CCNGG 3 cut(s) 12, 60, 108
TaaI ACNGT 2 cut(s) 20, 791
TaiI ACGT 2 cut(s) 69, 766
TaqI TCGA 6 cut(s) 24, 72, 129, 183, 341, 704
TaqII GACCGA 1 cut(s) 449
TasI AATT 6 cut(s) 314, 383, 425, 486, 648, 847
TauI GCSGC 4 cut(s) 216, 373, 442, 843
TfiI GAWTC 4 cut(s) 305, 404, 467, 653
TscAI CASTG 1 cut(s) 622
TseFI GTSAC 1 cut(s) 289
TseI GCWGC 4 cut(s) 35, 51, 552, 673
Tsp45I GTSAC 1 cut(s) 289
TspDTI ATGAA 1 cut(s) 860
TspRI CASTG 1 cut(s) 622
XapI RAATTY 2 cut(s) 314, 847
XceI RCATGY 1 cut(s) 719
XhoI CTCGAG 1 cut(s) 703
XspI CTAG 1 cut(s) 741
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.