Rorug07G0089700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0014747
Physical Location & Seq
Forward (+)
7033855 .. 7035282
1428 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0089700.1

Sequence Viewer

Length: 708 bp
ATGGAGAAGCTTGTTCCAAACTGGTACGGTGCTGCTCAACCCTTGCCTGAGACTTGCATATTCCCACCTGATGCAAGACCAGGGAAATTTAGCATTGCTCCTTCAAGGTCCGACATTCCAATGATTGATATAGGATATATCACAAGAAAGCATGTTAGCAAATGTTTCATCGACGTGAAGGAAGTGGCTTTGAATATTTTGAAGTTGATCGGTGAAGGACTAGGGACAGGGACAGGATCAGAGAATTTCAGTGATGAACTTAGCAAAGAGACTGACGTCTTTGTTAATAAACTATCCACCTTGTCCAGGCCCAATGGCCTTCAAGTTTTCAAGGATGGGGAATGGATTGGAGTGGAACCTATTTCAAATGGACTGGTGGTTAACATAGGCTATCAATTACGGATCATTAGTAATGGAAAGCTCAAGTGTGATGAACATCAAGTAGTGACAAATTCAAGTACTGTTCGGACGACGTTTGGATTTTTCATCACACCCTCCCCTGACTGCTATATAGAACCTGCAGCAGCTCTTATTAATGCAAGCAATCCCCAACTCTATAAAGGCTTCCGATATGAAGAGTTTCGTGCCAACTACTCTAGGAAGCAGGGGAAAACCGAAGCTGTGCTTGAACCCTTTAAAATCGAATCTAGCACTGTTGATGATGATGGTGTTATTGCTTCATGTTCAAGAGTCTTGTGCATTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

235

Amino Acids

25.92

Weight (kDa)

5.39

Isoelectric Point (pI)

36.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 104 - 165 3.2e-12 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 279
Acc36I ACCTGC 1 cut(s) 526
AclWI GGATC 2 cut(s) 244, 410
AcsI RAATTY 3 cut(s) 86, 244, 451
AcyI GRCGYC 1 cut(s) 276
AfaI GTAC 2 cut(s) 26, 460
AfiI CCNNNNNNNGG 1 cut(s) 306
AjiI CACGTC 1 cut(s) 175
AjnI CCWGG 2 cut(s) 79, 305
AluBI AGCT 4 cut(s) 10, 421, 527, 620
AluI AGCT 4 cut(s) 10, 421, 527, 620
Alw26I GTCTC 2 cut(s) 44, 263
AlwI GGATC 2 cut(s) 244, 410
AoxI GGCC 2 cut(s) 308, 316
ApeKI GCWGC 3 cut(s) 32, 521, 524
ApoI RAATTY 3 cut(s) 86, 244, 451
AseI ATTAAT 1 cut(s) 534
Asp700I GAANNNNTTC 1 cut(s) 579
AspS9I GGNCC 2 cut(s) 108, 309
AsuHPI GGTGA 1 cut(s) 224
AvaII GGWCC 1 cut(s) 108
BbvI GCAGC 3 cut(s) 19, 533, 536
BccI CCATC 2 cut(s) 329, 659
BciT130I CCWGG 2 cut(s) 81, 307
BcoDI GTCTC 2 cut(s) 44, 263
BfaI CTAG 3 cut(s) 221, 597, 648
BfmI CTRYAG 1 cut(s) 519
BfuAI ACCTGC 1 cut(s) 526
BisI GCNGC 3 cut(s) 33, 522, 525
BlsI GCNGC 3 cut(s) 34, 523, 526
BmcAI AGTACT 1 cut(s) 460
Bme1390I CCNGG 2 cut(s) 81, 307
Bme18I GGWCC 1 cut(s) 108
BmgBI CACGTC 1 cut(s) 175
BmgT120I GGNCC 2 cut(s) 108, 309
BmiI GGNNCC 1 cut(s) 357
BmrFI CCNGG 2 cut(s) 81, 307
BmsI GCATC 1 cut(s) 61
BoxI GACNNNNGTC 1 cut(s) 275
BpuEI CTTGAG 1 cut(s) 407
BsaBI GATNNNNATC 1 cut(s) 435
BsaHI GRCGYC 1 cut(s) 276
BsaJI CCNNGG 1 cut(s) 80
Bsc4I CCNNNNNNNGG 1 cut(s) 306
Bse1I ACTGG 2 cut(s) 26, 378
Bse3DI GCAATG 1 cut(s) 93
Bse8I GATNNNNATC 1 cut(s) 435
BseBI CCWGG 2 cut(s) 81, 307
BseDI CCNNGG 1 cut(s) 80
BseGI GGATG 1 cut(s) 340
BseJI GATNNNNATC 1 cut(s) 435
BseLI CCNNNNNNNGG 1 cut(s) 306
BseMI GCAATG 1 cut(s) 93
BseMII CTCAG 1 cut(s) 39
BseNI ACTGG 2 cut(s) 26, 378
BseXI GCAGC 3 cut(s) 19, 533, 536
BshFI GGCC 2 cut(s) 310, 318
BslFI GGGAC 2 cut(s) 238, 244
BslI CCNNNNNNNGG 1 cut(s) 306
BsmAI GTCTC 2 cut(s) 44, 263
BsmFI GGGAC 2 cut(s) 238, 244
BsnI GGCC 2 cut(s) 310, 318
Bsp143I GATC 3 cut(s) 207, 236, 402
BspANI GGCC 2 cut(s) 310, 318
BspCNI CTCAG 1 cut(s) 40
BspLI GGNNCC 1 cut(s) 357
BspMAI CTGCAG 1 cut(s) 523
BspMI ACCTGC 1 cut(s) 526
BspPI GGATC 2 cut(s) 244, 410
BsrDI GCAATG 1 cut(s) 93
BsrI ACTGG 2 cut(s) 26, 378
BssECI CCNNGG 1 cut(s) 80
BssMI GATC 3 cut(s) 207, 236, 402
BssNI GRCGYC 1 cut(s) 276
Bst2UI CCWGG 2 cut(s) 81, 307
Bst4CI ACNGT 3 cut(s) 29, 463, 655
Bst6I CTCTTC 1 cut(s) 570
BstACI GRCGYC 1 cut(s) 276
BstC8I GCNNGC 1 cut(s) 541
BstDEI CTNAG 2 cut(s) 48, 260
BstENI CCTNNNNNAGG 1 cut(s) 304
BstF5I GGATG 1 cut(s) 340
BstKTI GATC 3 cut(s) 210, 239, 405
BstMAI GTCTC 2 cut(s) 44, 263
BstMBI GATC 3 cut(s) 207, 236, 402
BstNI CCWGG 2 cut(s) 81, 307
BstNSI RCATGY 1 cut(s) 155
BstPAI GACNNNNGTC 1 cut(s) 275
BstSCI CCNGG 2 cut(s) 79, 305
BstSFI CTRYAG 1 cut(s) 519
BstV1I GCAGC 3 cut(s) 19, 533, 536
BsuRI GGCC 2 cut(s) 310, 318
BtrI CACGTC 1 cut(s) 175
BtsCI GGATG 1 cut(s) 340
BtsIMutI CAGTG 2 cut(s) 256, 651
BveI ACCTGC 1 cut(s) 526
Cac8I GCNNGC 1 cut(s) 541
Cfr13I GGNCC 2 cut(s) 108, 309
Csp6I GTAC 2 cut(s) 25, 459
CviAII CATG 2 cut(s) 152, 681
CviJI RGCY 9 cut(s) 10, 188, 310, 318, 390, 421, 527, 564, 620
CviKI_1 RGCY 9 cut(s) 10, 188, 310, 318, 390, 421, 527, 564, 620
CviQI GTAC 2 cut(s) 25, 459
DdeI CTNAG 2 cut(s) 48, 260
DpnI GATC 3 cut(s) 209, 238, 404
DpnII GATC 3 cut(s) 207, 236, 402
DraI TTTAAA 1 cut(s) 637
Eam1104I CTCTTC 1 cut(s) 570
EarI CTCTTC 1 cut(s) 570
Eco47I GGWCC 1 cut(s) 108
EcoNI CCTNNNNNAGG 1 cut(s) 304
EcoRII CCWGG 2 cut(s) 79, 305
FaeI CATG 2 cut(s) 155, 684
FalI AAGNNNNNCTT 2 cut(s) 609, 641
FaqI GGGAC 2 cut(s) 238, 244
FatI CATG 2 cut(s) 151, 680
Fnu4HI GCNGC 3 cut(s) 33, 522, 525
FokI GGATG 1 cut(s) 347
Fsp4HI GCNGC 3 cut(s) 33, 522, 525
FspBI CTAG 3 cut(s) 221, 597, 648
GluI GCNGC 3 cut(s) 33, 522, 525
HaeIII GGCC 2 cut(s) 310, 318
Hin1I GRCGYC 1 cut(s) 276
Hin1II CATG 2 cut(s) 155, 684
HincII GTYRAC 1 cut(s) 382
HindII GTYRAC 1 cut(s) 382
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 2 cut(s) 644, 690
HpaI GTTAAC 1 cut(s) 382
HphI GGTGA 1 cut(s) 224
Hpy166II GTNNAC 1 cut(s) 382
Hpy188I TCNGA 4 cut(s) 112, 241, 468, 569
Hpy188III TCNNGA 1 cut(s) 687
Hpy8I GTNNAC 1 cut(s) 382
Hpy99I CGWCG 2 cut(s) 176, 475
HpyAV CCTTC 4 cut(s) 111, 172, 209, 329
HpyCH4III ACNGT 3 cut(s) 29, 463, 655
HpyCH4IV ACGT 3 cut(s) 174, 276, 473
HpyCH4V TGCA 5 cut(s) 57, 74, 521, 539, 699
HpyF3I CTNAG 2 cut(s) 48, 260
HpySE526I ACGT 3 cut(s) 174, 276, 473
Hsp92I GRCGYC 1 cut(s) 276
Hsp92II CATG 2 cut(s) 155, 684
KspAI GTTAAC 1 cut(s) 382
Kzo9I GATC 3 cut(s) 207, 236, 402
LmnI GCTCC 1 cut(s) 103
Lsp1109I GCAGC 3 cut(s) 19, 533, 536
LweI GCATC 1 cut(s) 61
MaeI CTAG 3 cut(s) 221, 597, 648
MaeII ACGT 3 cut(s) 174, 276, 473
MaeIII GTNAC 1 cut(s) 445
MalI GATC 3 cut(s) 209, 238, 404
MboI GATC 3 cut(s) 207, 236, 402
MboII GAAGA 1 cut(s) 587
MluCI AATT 4 cut(s) 86, 244, 395, 451
MlyI GAGTC 1 cut(s) 699
MmeI TCCRAC 1 cut(s) 135
MnlI CCTC 1 cut(s) 505
MroXI GAANNNNTTC 1 cut(s) 579
MseI TTAA 4 cut(s) 285, 381, 534, 636
MslI CAYNNNNRTG 2 cut(s) 119, 173
MspR9I CCNGG 2 cut(s) 81, 307
MvaI CCWGG 2 cut(s) 81, 307
NdeII GATC 3 cut(s) 207, 236, 402
NlaIII CATG 2 cut(s) 155, 684
NlaIV GGNNCC 1 cut(s) 357
NmuCI GTSAC 1 cut(s) 445
NspI RCATGY 1 cut(s) 155
PdmI GAANNNNTTC 1 cut(s) 579
PfeI GAWTC 1 cut(s) 644
PkrI GCNGC 3 cut(s) 34, 523, 526
PleI GAGTC 1 cut(s) 698
PpsI GAGTC 1 cut(s) 698
PshAI GACNNNNGTC 1 cut(s) 275
PshBI ATTAAT 1 cut(s) 534
Psp6I CCWGG 2 cut(s) 79, 305
PspGI CCWGG 2 cut(s) 79, 305
PspN4I GGNNCC 1 cut(s) 357
PspPI GGNCC 2 cut(s) 108, 309
PstI CTGCAG 1 cut(s) 523
RsaI GTAC 2 cut(s) 26, 460
RsaNI GTAC 2 cut(s) 25, 459
RseI CAYNNNNRTG 2 cut(s) 119, 173
SaqAI TTAA 4 cut(s) 285, 381, 534, 636
SatI GCNGC 3 cut(s) 33, 522, 525
Sau3AI GATC 3 cut(s) 207, 236, 402
Sau96I GGNCC 2 cut(s) 108, 309
ScaI AGTACT 1 cut(s) 460
SchI GAGTC 1 cut(s) 699
ScrFI CCNGG 2 cut(s) 81, 307
SfaNI GCATC 1 cut(s) 61
SfcI CTRYAG 1 cut(s) 519
SinI GGWCC 1 cut(s) 108
SmiMI CAYNNNNRTG 2 cut(s) 119, 173
SmlI CTYRAG 1 cut(s) 422
SmoI CTYRAG 1 cut(s) 422
Sse9I AATT 4 cut(s) 86, 244, 395, 451
SspI AATATT 1 cut(s) 196
SspMI CTAG 3 cut(s) 221, 597, 648
StyD4I CCNGG 2 cut(s) 79, 305
TaaI ACNGT 3 cut(s) 29, 463, 655
TaiI ACGT 3 cut(s) 177, 279, 476
TaqI TCGA 2 cut(s) 171, 642
TasI AATT 4 cut(s) 86, 244, 395, 451
TatI WGTACW 1 cut(s) 458
TfiI GAWTC 1 cut(s) 644
Tru1I TTAA 4 cut(s) 285, 381, 534, 636
Tru9I TTAA 4 cut(s) 285, 381, 534, 636
TscAI CASTG 2 cut(s) 256, 658
TseFI GTSAC 1 cut(s) 445
TseI GCWGC 3 cut(s) 32, 521, 524
Tsp45I GTSAC 1 cut(s) 445
TspDTI ATGAA 6 cut(s) 157, 270, 447, 475, 588, 669
TspGWI ACGGA 1 cut(s) 415
TspRI CASTG 2 cut(s) 256, 658
VpaK11BI GGWCC 1 cut(s) 108
VspI ATTAAT 1 cut(s) 534
XagI CCTNNNNNAGG 1 cut(s) 304
XapI RAATTY 3 cut(s) 86, 244, 451
XceI RCATGY 1 cut(s) 155
XmnI GAANNNNTTC 1 cut(s) 579
XspI CTAG 3 cut(s) 221, 597, 648
ZraI GACGTC 1 cut(s) 277
ZrmI AGTACT 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.