Belongs to the ClpA ClpB family
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G51070 |
| fragaria_vesca | FvH4_5g10020 |
| malus_domestica | MD06G1128400.v1.1 |
| prunus_persica | Prupe.5G138200_v2.0.a1 |
| pyrus_communis | pycom06g11860 |
| rosa_chinensis | RchiOBHm_Chr7g0188241 |
| rosa_laevigata | RLG00000004715 |
| rosa_multiflora | Rmu_co8357845.1_g000001 Rmu_co8388145.1_g000001 Rmu_sc0008750.1_g000013 |
| rosa_roxburghii | Rroxscaffold_3G00266580 |
| rosa_rugosa | Rorug06G0489400 |
| rosa_samantha | Rh7AG093700 Rh7BG095100 Rh7CG095500 Rh7DG095700 |
| rosa_wichuraiana | Rw7G008070 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 2435 |
| Acc36I | ACCTGC | 1 cut(s) | 1753 |
| AccB1I | GGYRCC | 1 cut(s) | 2753 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 845 |
| AccBSI | CCGCTC | 1 cut(s) | 2200 |
| AccI | GTMKAC | 3 cut(s) | 1696, 2467, 2926 |
| AccII | CGCG | 3 cut(s) | 510, 1210, 2046 |
| AcoI | YGGCCR | 3 cut(s) | 982, 1077, 2371 |
| AcsI | RAATTY | 2 cut(s) | 1731, 2641 |
| AcuI | CTGAAG | 4 cut(s) | 1014, 1910, 2075, 2292 |
| AcyI | GRCGYC | 1 cut(s) | 2432 |
| AfaI | GTAC | 1 cut(s) | 1275 |
| AfeI | AGCGCT | 2 cut(s) | 381, 2811 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 845, 980, 1358, 1804, 1908, 2172, 2617 |
| AflIII | ACRYGT | 1 cut(s) | 1144 |
| AgeI | ACCGGT | 1 cut(s) | 2742 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 395 |
| AjnI | CCWGG | 6 cut(s) | 281, 501, 586, 1476, 2233, 2833 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 399, 431, 1674, 1706 |
| Alw21I | GWGCWC | 4 cut(s) | 133, 679, 702, 1654 |
| Alw26I | GTCTC | 4 cut(s) | 313, 2682, 2706, 2834 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 123 |
| Ama87I | CYCGRG | 2 cut(s) | 2025, 2630 |
| Aor51HI | AGCGCT | 2 cut(s) | 381, 2811 |
| AoxI | GGCC | 5 cut(s) | 982, 1077, 1524, 2288, 2371 |
| ApoI | RAATTY | 2 cut(s) | 1731, 2641 |
| AseI | ATTAAT | 3 cut(s) | 1172, 1464, 2219 |
| AsiGI | ACCGGT | 1 cut(s) | 2742 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 516, 1824, 2811 |
| AspLEI | GCGC | 4 cut(s) | 382, 655, 1210, 2812 |
| AspS9I | GGNCC | 6 cut(s) | 748, 922, 1525, 1765, 2096, 2716 |
| AsuII | TTCGAA | 3 cut(s) | 301, 1441, 1735 |
| AvaI | CYCGRG | 2 cut(s) | 2025, 2630 |
| AvaII | GGWCC | 5 cut(s) | 748, 922, 1765, 2096, 2716 |
| BaeGI | GKGCMC | 1 cut(s) | 2758 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 981, 1014 |
| BalI | TGGCCA | 1 cut(s) | 2373 |
| BamHI | GGATCC | 1 cut(s) | 2059 |
| BanI | GGYRCC | 1 cut(s) | 2753 |
| BanII | GRGCYC | 3 cut(s) | 58, 679, 1654 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2154, 2186 |
| BbsI | GAAGAC | 3 cut(s) | 9, 172, 391 |
| Bbv12I | GWGCWC | 4 cut(s) | 133, 679, 702, 1654 |
| BbvCI | CCTCAGC | 1 cut(s) | 789 |
| BceAI | ACGGC | 2 cut(s) | 335, 1092 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 622, 656, 1715, 1749, 2843, 2877 |
| BciT130I | CCWGG | 6 cut(s) | 283, 503, 588, 1478, 2235, 2835 |
| BcoDI | GTCTC | 4 cut(s) | 313, 2682, 2706, 2834 |
| BfaI | CTAG | 5 cut(s) | 582, 954, 1769, 1800, 1829 |
| BfmI | CTRYAG | 2 cut(s) | 1395, 1866 |
| BfoI | RGCGCY | 2 cut(s) | 383, 2813 |
| BfuAI | ACCTGC | 1 cut(s) | 1753 |
| Bme1390I | CCNGG | 6 cut(s) | 283, 503, 588, 1478, 2235, 2835 |
| Bme18I | GGWCC | 5 cut(s) | 748, 922, 1765, 2096, 2716 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 395 |
| BmeT110I | CYCGRG | 2 cut(s) | 2025, 2630 |
| BmgT120I | GGNCC | 6 cut(s) | 748, 922, 1525, 1765, 2096, 2716 |
| BmiI | GGNNCC | 3 cut(s) | 57, 2061, 2755 |
| BmrFI | CCNGG | 6 cut(s) | 283, 503, 588, 1478, 2235, 2835 |
| BmrI | ACTGGG | 2 cut(s) | 770, 2112 |
| BmuI | ACTGGG | 2 cut(s) | 770, 2112 |
| BpiI | GAAGAC | 3 cut(s) | 9, 172, 391 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 782, 814 |
| BpmI | CTGGAG | 1 cut(s) | 784 |
| Bpu10I | CCTNAGC | 3 cut(s) | 789, 1979, 2388 |
| Bpu14I | TTCGAA | 3 cut(s) | 301, 1441, 1735 |
| BpuEI | CTTGAG | 3 cut(s) | 665, 677, 2534 |
| Bsa29I | ATCGAT | 2 cut(s) | 969, 2853 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1602 |
| BsaHI | GRCGYC | 1 cut(s) | 2432 |
| BsaJI | CCNNGG | 5 cut(s) | 312, 432, 538, 1155, 2233 |
| BsaWI | WCCGGW | 3 cut(s) | 1711, 2742, 2867 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 845, 980, 1358, 1804, 1908, 2172, 2617 |
| Bse118I | RCCGGY | 1 cut(s) | 2742 |
| Bse1I | ACTGG | 5 cut(s) | 765, 778, 1098, 2107, 2922 |
| Bse3DI | GCAATG | 4 cut(s) | 687, 702, 1332, 2454 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1602 |
| BseBI | CCWGG | 6 cut(s) | 283, 503, 588, 1478, 2235, 2835 |
| BseCI | ATCGAT | 2 cut(s) | 969, 2853 |
| BseDI | CCNNGG | 5 cut(s) | 312, 432, 538, 1155, 2233 |
| BseJI | GATNNNNATC | 1 cut(s) | 1602 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 845, 980, 1358, 1804, 1908, 2172, 2617 |
| BseMI | GCAATG | 4 cut(s) | 687, 702, 1332, 2454 |
| BseMII | CTCAG | 4 cut(s) | 780, 885, 2402, 2636 |
| BseNI | ACTGG | 5 cut(s) | 765, 778, 1098, 2107, 2922 |
| BseRI | GAGGAG | 2 cut(s) | 217, 449 |
| BseSI | GKGCMC | 1 cut(s) | 2758 |
| BseYI | CCCAGC | 1 cut(s) | 266 |
| BsgI | GTGCAG | 2 cut(s) | 1019, 1781 |
| Bsh1236I | CGCG | 3 cut(s) | 510, 1210, 2046 |
| BshFI | GGCC | 5 cut(s) | 984, 1079, 1526, 2290, 2373 |
| BshNI | GGYRCC | 1 cut(s) | 2753 |
| BshTI | ACCGGT | 1 cut(s) | 2742 |
| BshVI | ATCGAT | 2 cut(s) | 969, 2853 |
| BsiHKAI | GWGCWC | 4 cut(s) | 133, 679, 702, 1654 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2025, 2630 |
| BsiSI | CCGG | 4 cut(s) | 1712, 2743, 2820, 2868 |
| BslFI | GGGAC | 4 cut(s) | 243, 599, 975, 1106 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 845, 980, 1358, 1804, 1908, 2172, 2617 |
| BsmAI | GTCTC | 4 cut(s) | 313, 2682, 2706, 2834 |
| BsmBI | CGTCTC | 1 cut(s) | 313 |
| BsmFI | GGGAC | 4 cut(s) | 243, 599, 975, 1106 |
| BsmI | GAATGC | 2 cut(s) | 1956, 2203 |
| BsnI | GGCC | 5 cut(s) | 984, 1079, 1526, 2290, 2373 |
| BsoBI | CYCGRG | 2 cut(s) | 2025, 2630 |
| Bsp119I | TTCGAA | 3 cut(s) | 301, 1441, 1735 |
| Bsp1286I | GDGCHC | 6 cut(s) | 58, 133, 679, 702, 1654, 2758 |
| Bsp19I | CCATGG | 1 cut(s) | 538 |
| Bsp68I | TCGCGA | 1 cut(s) | 510 |
| BspANI | GGCC | 5 cut(s) | 984, 1079, 1526, 2290, 2373 |
| BspCNI | CTCAG | 4 cut(s) | 781, 886, 2401, 2635 |
| BspDI | ATCGAT | 2 cut(s) | 969, 2853 |
| BspFNI | CGCG | 3 cut(s) | 510, 1210, 2046 |
| BspLI | GGNNCC | 3 cut(s) | 57, 2061, 2755 |
| BspMI | ACCTGC | 1 cut(s) | 1753 |
| BspT104I | TTCGAA | 3 cut(s) | 301, 1441, 1735 |
| BspT107I | GGYRCC | 1 cut(s) | 2753 |
| BsrBI | CCGCTC | 1 cut(s) | 2200 |
| BsrDI | GCAATG | 4 cut(s) | 687, 702, 1332, 2454 |
| BsrFI | RCCGGY | 1 cut(s) | 2742 |
| BsrI | ACTGG | 5 cut(s) | 765, 778, 1098, 2107, 2922 |
| BssAI | RCCGGY | 1 cut(s) | 2742 |
| BssECI | CCNNGG | 5 cut(s) | 312, 432, 538, 1155, 2233 |
| BssNAI | GTATAC | 2 cut(s) | 1697, 2927 |
| BssNI | GRCGYC | 1 cut(s) | 2432 |
| BssT1I | CCWWGG | 2 cut(s) | 538, 1155 |
| Bst1107I | GTATAC | 2 cut(s) | 1697, 2927 |
| Bst2UI | CCWGG | 6 cut(s) | 283, 503, 588, 1478, 2235, 2835 |
| Bst6I | CTCTTC | 3 cut(s) | 235, 1929, 1998 |
| BstACI | GRCGYC | 1 cut(s) | 2432 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 123, 1759, 1898 |
| BstBI | TTCGAA | 3 cut(s) | 301, 1441, 1735 |
| BstC8I | GCNNGC | 5 cut(s) | 296, 339, 508, 819, 2493 |
| BstDEI | CTNAG | 7 cut(s) | 789, 882, 894, 1979, 2388, 2622, 2765 |
| BstDSI | CCRYGG | 1 cut(s) | 538 |
| BstEII | GGTNACC | 1 cut(s) | 2226 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2615 |
| BstFNI | CGCG | 3 cut(s) | 510, 1210, 2046 |
| BstH2I | RGCGCY | 2 cut(s) | 383, 2813 |
| BstHHI | GCGC | 4 cut(s) | 382, 655, 1210, 2812 |
| BstMAI | GTCTC | 4 cut(s) | 313, 2682, 2706, 2834 |
| BstNI | CCWGG | 6 cut(s) | 283, 503, 588, 1478, 2235, 2835 |
| BstNSI | RCATGY | 1 cut(s) | 2145 |
| BstPI | GGTNACC | 1 cut(s) | 2226 |
| BstSCI | CCNGG | 6 cut(s) | 281, 501, 586, 1476, 2233, 2833 |
| BstSFI | CTRYAG | 2 cut(s) | 1395, 1866 |
| BstSLI | GKGCMC | 1 cut(s) | 2758 |
| BstUI | CGCG | 3 cut(s) | 510, 1210, 2046 |
| BstV2I | GAAGAC | 3 cut(s) | 9, 172, 391 |
| BstX2I | RGATCY | 6 cut(s) | 937, 1028, 2039, 2059, 2444, 2794 |
| BstYI | RGATCY | 6 cut(s) | 937, 1028, 2039, 2059, 2444, 2794 |
| BstZ17I | GTATAC | 2 cut(s) | 1697, 2927 |
| Bsu15I | ATCGAT | 2 cut(s) | 969, 2853 |
| BsuRI | GGCC | 5 cut(s) | 984, 1079, 1526, 2290, 2373 |
| BsuTUI | ATCGAT | 2 cut(s) | 969, 2853 |
| BtgI | CCRYGG | 1 cut(s) | 538 |
| BtgZI | GCGATG | 1 cut(s) | 2059 |
| BtsI | GCAGTG | 4 cut(s) | 720, 1791, 1935, 2081 |
| BtuMI | TCGCGA | 1 cut(s) | 510 |
| BveI | ACCTGC | 1 cut(s) | 1753 |
| Cac8I | GCNNGC | 5 cut(s) | 296, 339, 508, 819, 2493 |
| CaiI | CAGNNNCTG | 1 cut(s) | 123 |
| CfoI | GCGC | 4 cut(s) | 382, 655, 1210, 2812 |
| Cfr10I | RCCGGY | 1 cut(s) | 2742 |
| Cfr13I | GGNCC | 6 cut(s) | 748, 922, 1525, 1765, 2096, 2716 |
| ClaI | ATCGAT | 2 cut(s) | 969, 2853 |
| Csp6I | GTAC | 1 cut(s) | 1274 |
| CspAI | ACCGGT | 1 cut(s) | 2742 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1439, 1474 |
| CviAII | CATG | 7 cut(s) | 149, 394, 539, 1754, 2142, 2167, 2182 |
| CviQI | GTAC | 1 cut(s) | 1274 |
| DdeI | CTNAG | 7 cut(s) | 789, 882, 894, 1979, 2388, 2622, 2765 |
| DraI | TTTAAA | 2 cut(s) | 250, 2410 |
| DriI | GACNNNNNGTC | 1 cut(s) | 395 |
| EaeI | YGGCCR | 3 cut(s) | 982, 1077, 2371 |
| Eam1104I | CTCTTC | 3 cut(s) | 235, 1929, 1998 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 395 |
| EarI | CTCTTC | 3 cut(s) | 235, 1929, 1998 |
| Ecl136II | GAGCTC | 2 cut(s) | 677, 1652 |
| Eco130I | CCWWGG | 2 cut(s) | 538, 1155 |
| Eco24I | GRGCYC | 3 cut(s) | 58, 679, 1654 |
| Eco32I | GATATC | 3 cut(s) | 888, 1604, 2338 |
| Eco47I | GGWCC | 5 cut(s) | 748, 922, 1765, 2096, 2716 |
| Eco47III | AGCGCT | 2 cut(s) | 381, 2811 |
| Eco53kI | GAGCTC | 2 cut(s) | 677, 1652 |
| Eco57I | CTGAAG | 4 cut(s) | 1014, 1910, 2075, 2292 |
| Eco88I | CYCGRG | 2 cut(s) | 2025, 2630 |
| Eco91I | GGTNACC | 1 cut(s) | 2226 |
| EcoICRI | GAGCTC | 2 cut(s) | 677, 1652 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2615 |
| EcoO109I | RGGNCCY | 3 cut(s) | 748, 1765, 2716 |
| EcoO65I | GGTNACC | 1 cut(s) | 2226 |
| EcoRII | CCWGG | 6 cut(s) | 281, 501, 586, 1476, 2233, 2833 |
| EcoRV | GATATC | 3 cut(s) | 888, 1604, 2338 |
| EcoT14I | CCWWGG | 2 cut(s) | 538, 1155 |
| EcoT22I | ATGCAT | 3 cut(s) | 1416, 1755, 2419 |
| EcoT38I | GRGCYC | 3 cut(s) | 58, 679, 1654 |
| ErhI | CCWWGG | 2 cut(s) | 538, 1155 |
| Esp3I | CGTCTC | 1 cut(s) | 313 |
| FaeI | CATG | 7 cut(s) | 152, 397, 542, 1757, 2145, 2170, 2185 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 801, 833, 2275, 2307, 2799, 2831 |
| FaqI | GGGAC | 4 cut(s) | 243, 599, 975, 1106 |
| FatI | CATG | 7 cut(s) | 148, 393, 538, 1753, 2141, 2166, 2181 |
| FauI | CCCGC | 3 cut(s) | 630, 1633, 2051 |
| FauNDI | CATATG | 1 cut(s) | 2723 |
| FblI | GTMKAC | 3 cut(s) | 1696, 2467, 2926 |
| FriOI | GRGCYC | 3 cut(s) | 58, 679, 1654 |
| FspBI | CTAG | 5 cut(s) | 582, 954, 1769, 1800, 1829 |
| GlaI | GCGC | 4 cut(s) | 381, 654, 1209, 2811 |
| GsaI | CCCAGC | 1 cut(s) | 270 |
| GsuI | CTGGAG | 1 cut(s) | 784 |
| HaeII | RGCGCY | 2 cut(s) | 383, 2813 |
| HaeIII | GGCC | 5 cut(s) | 984, 1079, 1526, 2290, 2373 |
| HapII | CCGG | 4 cut(s) | 1712, 2743, 2820, 2868 |
| HhaI | GCGC | 4 cut(s) | 382, 655, 1210, 2812 |
| Hin1I | GRCGYC | 1 cut(s) | 2432 |
| Hin1II | CATG | 7 cut(s) | 152, 397, 542, 1757, 2145, 2170, 2185 |
| Hin6I | GCGC | 4 cut(s) | 380, 653, 1208, 2810 |
| HinP1I | GCGC | 4 cut(s) | 380, 653, 1208, 2810 |
| HincII | GTYRAC | 1 cut(s) | 103 |
| HindII | GTYRAC | 1 cut(s) | 103 |
| HindIII | AAGCTT | 4 cut(s) | 296, 1662, 1976, 2130 |
| HinfI | GANTC | 7 cut(s) | 303, 327, 963, 1289, 1495, 1832, 1917 |
| HpaI | GTTAAC | 1 cut(s) | 103 |
| HpaII | CCGG | 4 cut(s) | 1712, 2743, 2820, 2868 |
| Hpy166II | GTNNAC | 6 cut(s) | 103, 775, 1697, 2468, 2908, 2927 |
| Hpy8I | GTNNAC | 6 cut(s) | 103, 775, 1697, 2468, 2908, 2927 |
| HpyAV | CCTTC | 6 cut(s) | 1082, 2050, 2277, 2360, 2621, 2707 |
| HpyCH4IV | ACGT | 2 cut(s) | 1144, 2432 |
| HpyF3I | CTNAG | 7 cut(s) | 789, 882, 894, 1979, 2388, 2622, 2765 |
| HpySE526I | ACGT | 2 cut(s) | 1144, 2432 |
| Hsp92I | GRCGYC | 1 cut(s) | 2432 |
| Hsp92II | CATG | 7 cut(s) | 152, 397, 542, 1757, 2145, 2170, 2185 |
| HspAI | GCGC | 4 cut(s) | 380, 653, 1208, 2810 |
| KspAI | GTTAAC | 1 cut(s) | 103 |
| LmnI | GCTCC | 2 cut(s) | 61, 2197 |
| MaeI | CTAG | 5 cut(s) | 582, 954, 1769, 1800, 1829 |
| MaeII | ACGT | 2 cut(s) | 1144, 2432 |
| MaeIII | GTNAC | 7 cut(s) | 1213, 1229, 1353, 1707, 2226, 2506, 2825 |
| MbiI | CCGCTC | 1 cut(s) | 2200 |
| MfeI | CAATTG | 1 cut(s) | 1534 |
| MflI | RGATCY | 6 cut(s) | 937, 1028, 2039, 2059, 2444, 2794 |
| MhlI | GDGCHC | 6 cut(s) | 58, 133, 679, 702, 1654, 2758 |
| MlsI | TGGCCA | 1 cut(s) | 2373 |
| MluNI | TGGCCA | 1 cut(s) | 2373 |
| MlyI | GAGTC | 3 cut(s) | 957, 1298, 1826 |
| MmeI | TCCRAC | 4 cut(s) | 1048, 1282, 2029, 2375 |
| Mox20I | TGGCCA | 1 cut(s) | 2373 |
| Mph1103I | ATGCAT | 3 cut(s) | 1416, 1755, 2419 |
| MroXI | GAANNNNTTC | 3 cut(s) | 516, 1824, 2811 |
| MscI | TGGCCA | 1 cut(s) | 2373 |
| MslI | CAYNNNNRTG | 3 cut(s) | 46, 147, 537 |
| Msp20I | TGGCCA | 1 cut(s) | 2373 |
| MspA1I | CMGCKG | 2 cut(s) | 270, 1568 |
| MspI | CCGG | 4 cut(s) | 1712, 2743, 2820, 2868 |
| MspR9I | CCNGG | 6 cut(s) | 283, 503, 588, 1478, 2235, 2835 |
| MunI | CAATTG | 1 cut(s) | 1534 |
| Mva1269I | GAATGC | 2 cut(s) | 1956, 2203 |
| MvaI | CCWGG | 6 cut(s) | 283, 503, 588, 1478, 2235, 2835 |
| MvnI | CGCG | 3 cut(s) | 510, 1210, 2046 |
| NcoI | CCATGG | 1 cut(s) | 538 |
| NdeI | CATATG | 1 cut(s) | 2723 |
| NlaIII | CATG | 7 cut(s) | 152, 397, 542, 1757, 2145, 2170, 2185 |
| NlaIV | GGNNCC | 3 cut(s) | 57, 2061, 2755 |
| NmeAIII | GCCGAG | 2 cut(s) | 457, 1010 |
| NmuCI | GTSAC | 4 cut(s) | 1229, 1353, 1707, 2226 |
| NruI | TCGCGA | 1 cut(s) | 510 |
| NsiI | ATGCAT | 3 cut(s) | 1416, 1755, 2419 |
| NspI | RCATGY | 1 cut(s) | 2145 |
| NspV | TTCGAA | 3 cut(s) | 301, 1441, 1735 |
| PaeR7I | CTCGAG | 2 cut(s) | 2025, 2630 |
| PctI | GAATGC | 2 cut(s) | 1956, 2203 |
| PdmI | GAANNNNTTC | 3 cut(s) | 516, 1824, 2811 |
| PfeI | GAWTC | 4 cut(s) | 303, 327, 1495, 1917 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 845 |
| PinAI | ACCGGT | 1 cut(s) | 2742 |
| PleI | GAGTC | 3 cut(s) | 957, 1297, 1826 |
| PpsI | GAGTC | 3 cut(s) | 957, 1297, 1826 |
| PpuMI | RGGWCCY | 3 cut(s) | 748, 1765, 2716 |
| PshBI | ATTAAT | 3 cut(s) | 1172, 1464, 2219 |
| Psp124BI | GAGCTC | 2 cut(s) | 679, 1654 |
| Psp5II | RGGWCCY | 3 cut(s) | 748, 1765, 2716 |
| Psp6I | CCWGG | 6 cut(s) | 281, 501, 586, 1476, 2233, 2833 |
| PspEI | GGTNACC | 1 cut(s) | 2226 |
| PspFI | CCCAGC | 1 cut(s) | 266 |
| PspGI | CCWGG | 6 cut(s) | 281, 501, 586, 1476, 2233, 2833 |
| PspN4I | GGNNCC | 3 cut(s) | 57, 2061, 2755 |
| PspPI | GGNCC | 6 cut(s) | 748, 922, 1525, 1765, 2096, 2716 |
| PspPPI | RGGWCCY | 3 cut(s) | 748, 1765, 2716 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2458, 2490 |
| PstNI | CAGNNNCTG | 1 cut(s) | 123 |
| PsuI | RGATCY | 6 cut(s) | 937, 1028, 2039, 2059, 2444, 2794 |
| RruI | TCGCGA | 1 cut(s) | 510 |
| RsaI | GTAC | 1 cut(s) | 1275 |
| RsaNI | GTAC | 1 cut(s) | 1274 |
| RseI | CAYNNNNRTG | 3 cut(s) | 46, 147, 537 |
| SacI | GAGCTC | 2 cut(s) | 679, 1654 |
| Sau96I | GGNCC | 6 cut(s) | 748, 922, 1525, 1765, 2096, 2716 |
| SchI | GAGTC | 3 cut(s) | 957, 1298, 1826 |
| ScrFI | CCNGG | 6 cut(s) | 283, 503, 588, 1478, 2235, 2835 |
| SduI | GDGCHC | 6 cut(s) | 58, 133, 679, 702, 1654, 2758 |
| SfcI | CTRYAG | 2 cut(s) | 1395, 1866 |
| Sfr274I | CTCGAG | 2 cut(s) | 2025, 2630 |
| SfuI | TTCGAA | 3 cut(s) | 301, 1441, 1735 |
| SinI | GGWCC | 5 cut(s) | 748, 922, 1765, 2096, 2716 |
| SlaI | CTCGAG | 2 cut(s) | 2025, 2630 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 46, 147, 537 |
| SmlI | CTYRAG | 5 cut(s) | 644, 656, 2025, 2549, 2630 |
| SmoI | CTYRAG | 5 cut(s) | 644, 656, 2025, 2549, 2630 |
| SspMI | CTAG | 5 cut(s) | 582, 954, 1769, 1800, 1829 |
| SstI | GAGCTC | 2 cut(s) | 679, 1654 |
| StyD4I | CCNGG | 6 cut(s) | 281, 501, 586, 1476, 2233, 2833 |
| StyI | CCWWGG | 2 cut(s) | 538, 1155 |
| TaiI | ACGT | 2 cut(s) | 1147, 2435 |
| TaqI | TCGA | 9 cut(s) | 301, 592, 969, 1441, 1654, 1735, 2026, 2631, 2853 |
| TatI | WGTACW | 1 cut(s) | 1273 |
| TauI | GCSGC | 4 cut(s) | 273, 1568, 2203, 2290 |
| TfiI | GAWTC | 4 cut(s) | 303, 327, 1495, 1917 |
| TseFI | GTSAC | 4 cut(s) | 1229, 1353, 1707, 2226 |
| Tsp45I | GTSAC | 4 cut(s) | 1229, 1353, 1707, 2226 |
| TspGWI | ACGGA | 1 cut(s) | 2787 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 845 |
| VpaK11BI | GGWCC | 5 cut(s) | 748, 922, 1765, 2096, 2716 |
| VspI | ATTAAT | 3 cut(s) | 1172, 1464, 2219 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2615 |
| XapI | RAATTY | 2 cut(s) | 1731, 2641 |
| XbaI | TCTAGA | 1 cut(s) | 1828 |
| XceI | RCATGY | 1 cut(s) | 2145 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 45 |
| XhoI | CTCGAG | 2 cut(s) | 2025, 2630 |
| XmiI | GTMKAC | 3 cut(s) | 1696, 2467, 2926 |
| XmnI | GAANNNNTTC | 3 cut(s) | 516, 1824, 2811 |
| XspI | CTAG | 5 cut(s) | 582, 954, 1769, 1800, 1829 |
| ZraI | GACGTC | 1 cut(s) | 2433 |
| Zsp2I | ATGCAT | 3 cut(s) | 1416, 1755, 2419 |