Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8357845.1

Orthogroup ID

OG0013822

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1010

Gene Structure 1010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8357845.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ctgtttggtttgcgtgagaaatatgaggcccatcacaactgcatatatgcaccagaagccattagtgctgctgtgtacctgtcagcaagatatattcctgatagatatcttcctgataaagctatcgatctccttgatgaggcgggaagtagagctcgtatggaagcctttaagaagaaaaaagaagagcgggttggcatactttcaaagtcacctgatgattattggcaagaaattcgtacagttcaggcaatgcatgaagtggtcctatcgagtgaactgaaaaatggagctgcttctgtggatgatgccagagaacatattctagagtccatttcatcttccacagtagatgatgaacctactgtggtgggaccaaatgatatagcagcagttgcctcactatggtcaggagtccctcttcagcagctcactgctgatgaccgactgcttttggtgggtcttgatgagaagctcagaagacgagttgttggtcaagatgaggctgttgcagccatttctcgagctgttaggaggtcccgggttggattgaaggatccaagtagacccatggcaacaatgctcttttgcggtcctactggagttggcaaaactgaactgacaaaagctttgtctgcatgttattttggatcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009941 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0031967 GO:0031975 GO:0033554 GO:0034214 GO:0034605 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0047484 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050896 GO:0051259 GO:0051716 GO:0065003 GO:0065007 GO:0071840 GO:0080134 GO:1901000 GO:1901002 GO:1902584 GO:2000070

KEGG Pathways

Metabolic & Signaling

ko01100 map01100

Pfam Domains

Protein Families

AAA AAA_2 ClpB_D2-small Clp_N

Protein Analysis

218

Amino Acids

23.95

Weight (kDa)

5.88

Isoelectric Point (pI)

43.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51070
fragaria_vesca	FvH4_5g10020
malus_domestica	MD06G1128400.v1.1
prunus_persica	Prupe.5G138200_v2.0.a1
pyrus_communis	pycom06g11860
rosa_chinensis	RchiOBHm_Chr7g0188241
rosa_laevigata	RLG00000004715
rosa_multiflora	Rmu_co8357845.1_g000001 Rmu_co8388145.1_g000001 Rmu_sc0008750.1_g000013
rosa_roxburghii	Rroxscaffold_3G00266580
rosa_rugosa	Rorug06G0489400
rosa_samantha	Rh7AG093700 Rh7BG095100 Rh7CG095500 Rh7DG095700
rosa_wichuraiana	Rw7G008070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	190
AccI	GTMKAC	1 cut(s)	565
AciI	CCGC	3 cut(s)	143, 190, 591
AclWI	GGATC	2 cut(s)	551, 564
AcsI	RAATTY	1 cut(s)	234
AcuI	CTGAAG	1 cut(s)	407
AfaI	GTAC	2 cut(s)	77, 241
AfiI	CCNNNNNNNGG	2 cut(s)	139, 405
AgsI	TTSAA	2 cut(s)	207, 553
AjuI	GAANNNNNNNTTGG	2 cut(s)	177, 209
AluBI	AGCT	7 cut(s)	122, 155, 293, 430, 475, 527, 629
AluI	AGCT	7 cut(s)	122, 155, 293, 430, 475, 527, 629
Alw21I	GWGCWC	1 cut(s)	157
AlwI	GGATC	2 cut(s)	551, 564
Ama87I	CYCGRG	2 cut(s)	522, 540
AoxI	GGCC	1 cut(s)	27
ApeKI	GCWGC	5 cut(s)	68, 293, 389, 427, 512
ApoI	RAATTY	1 cut(s)	234
ArsI	GACNNNNNNTTYG	4 cut(s)	613, 617, 645, 649
Asp700I	GAANNNNTTC	1 cut(s)	321
AspS9I	GGNCC	5 cut(s)	28, 265, 374, 537, 593
AsuC2I	CCSGG	2 cut(s)	541, 542
AsuHPI	GGTGA	1 cut(s)	204
AvaI	CYCGRG	2 cut(s)	522, 540
AvaII	GGWCC	4 cut(s)	265, 374, 537, 593
BamHI	GGATCC	1 cut(s)	556
BanII	GRGCYC	1 cut(s)	157
BbsI	GAAGAC	1 cut(s)	487
Bbv12I	GWGCWC	1 cut(s)	157
BbvI	GCAGC	5 cut(s)	55, 280, 401, 439, 524
BccI	CCATC	1 cut(s)	39
BcgI	CGANNNNNNTGC	2 cut(s)	218, 252
BcnI	CCSGG	2 cut(s)	541, 542
BfaI	CTAG	1 cut(s)	326
BisI	GCNGC	5 cut(s)	69, 294, 390, 428, 513
BlsI	GCNGC	5 cut(s)	70, 295, 391, 429, 514
Bme1390I	CCNGG	2 cut(s)	541, 542
Bme18I	GGWCC	4 cut(s)	265, 374, 537, 593
BmeT110I	CYCGRG	2 cut(s)	522, 540
BmgT120I	GGNCC	5 cut(s)	28, 265, 374, 537, 593
BmiI	GGNNCC	3 cut(s)	375, 539, 558
BmrFI	CCNGG	2 cut(s)	541, 542
BmsI	GCATC	1 cut(s)	298
BpiI	GAAGAC	1 cut(s)	487
BpmI	CTGGAG	1 cut(s)	621
BpuMI	CCSGG	2 cut(s)	541, 542
Bsa29I	ATCGAT	1 cut(s)	126
BsaBI	GATNNNNATC	1 cut(s)	105
BsaJI	CCNNGG	2 cut(s)	540, 570
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 405
Bse1I	ACTGG	1 cut(s)	604
Bse3DI	GCAATG	1 cut(s)	258
Bse8I	GATNNNNATC	1 cut(s)	105
BseCI	ATCGAT	1 cut(s)	126
BseDI	CCNNGG	2 cut(s)	540, 570
BseGI	GGATG	1 cut(s)	310
BseJI	GATNNNNATC	1 cut(s)	105
BseLI	CCNNNNNNNGG	2 cut(s)	139, 405
BseMI	GCAATG	1 cut(s)	258
BseMII	CTCAG	1 cut(s)	490
BseNI	ACTGG	1 cut(s)	604
BseXI	GCAGC	5 cut(s)	55, 280, 401, 439, 524
BshFI	GGCC	1 cut(s)	29
BshVI	ATCGAT	1 cut(s)	126
BsiHKAI	GWGCWC	1 cut(s)	157
BsiHKCI	CYCGRG	2 cut(s)	522, 540
BsiSI	CCGG	1 cut(s)	541
BslFI	GGGAC	3 cut(s)	387, 401, 523
BslI	CCNNNNNNNGG	2 cut(s)	139, 405
BsmFI	GGGAC	3 cut(s)	387, 401, 523
BsnI	GGCC	1 cut(s)	29
BsoBI	CYCGRG	2 cut(s)	522, 540
Bsp1286I	GDGCHC	1 cut(s)	157
Bsp143I	GATC	3 cut(s)	127, 556, 650
Bsp19I	CCATGG	1 cut(s)	570
BspACI	CCGC	3 cut(s)	143, 190, 591
BspANI	GGCC	1 cut(s)	29
BspCNI	CTCAG	1 cut(s)	489
BspDI	ATCGAT	1 cut(s)	126
BspLI	GGNNCC	3 cut(s)	375, 539, 558
BspPI	GGATC	2 cut(s)	551, 564
BspQI	GCTCTTC	1 cut(s)	180
BsrBI	CCGCTC	1 cut(s)	190
BsrDI	GCAATG	1 cut(s)	258
BsrI	ACTGG	1 cut(s)	604
BssECI	CCNNGG	2 cut(s)	540, 570
BssMI	GATC	3 cut(s)	127, 556, 650
BssT1I	CCWWGG	1 cut(s)	570
Bst4CI	ACNGT	3 cut(s)	244, 349, 367
Bst6I	CTCTTC	2 cut(s)	180, 426
BstAPI	GCANNNNNTGC	1 cut(s)	395
BstDEI	CTNAG	1 cut(s)	476
BstDSI	CCRYGG	1 cut(s)	570
BstENI	CCTNNNNNAGG	1 cut(s)	137
BstF5I	GGATG	1 cut(s)	310
BstKTI	GATC	3 cut(s)	130, 559, 653
BstMBI	GATC	3 cut(s)	127, 556, 650
BstMWI	GCNNNNNNNGC	5 cut(s)	56, 65, 395, 512, 635
BstNSI	RCATGY	1 cut(s)	642
BstSCI	CCNGG	2 cut(s)	539, 540
BstV1I	GCAGC	5 cut(s)	55, 280, 401, 439, 524
BstV2I	GAAGAC	1 cut(s)	487
BstX2I	RGATCY	1 cut(s)	556
BstYI	RGATCY	1 cut(s)	556
Bsu15I	ATCGAT	1 cut(s)	126
BsuRI	GGCC	1 cut(s)	29
BsuTUI	ATCGAT	1 cut(s)	126
BtgI	CCRYGG	1 cut(s)	570
BtsCI	GGATG	1 cut(s)	310
BtsI	GCAGTG	1 cut(s)	432
BtsIMutI	CAGTG	1 cut(s)	432
Cfr13I	GGNCC	5 cut(s)	28, 265, 374, 537, 593
Cfr9I	CCCGGG	1 cut(s)	540
ClaI	ATCGAT	1 cut(s)	126
Csp6I	GTAC	2 cut(s)	76, 240
CviAII	CATG	3 cut(s)	257, 571, 639
CviQI	GTAC	2 cut(s)	76, 240
DdeI	CTNAG	1 cut(s)	476
DpnI	GATC	3 cut(s)	129, 558, 652
DpnII	GATC	3 cut(s)	127, 556, 650
Eam1104I	CTCTTC	2 cut(s)	180, 426
EarI	CTCTTC	2 cut(s)	180, 426
Ecl136II	GAGCTC	1 cut(s)	155
Eco130I	CCWWGG	1 cut(s)	570
Eco24I	GRGCYC	1 cut(s)	157
Eco32I	GATATC	1 cut(s)	107
Eco47I	GGWCC	4 cut(s)	265, 374, 537, 593
Eco53kI	GAGCTC	1 cut(s)	155
Eco57I	CTGAAG	1 cut(s)	407
Eco88I	CYCGRG	2 cut(s)	522, 540
EcoICRI	GAGCTC	1 cut(s)	155
EcoNI	CCTNNNNNAGG	1 cut(s)	137
EcoO109I	RGGNCCY	1 cut(s)	537
EcoRV	GATATC	1 cut(s)	107
EcoT14I	CCWWGG	1 cut(s)	570
EcoT22I	ATGCAT	1 cut(s)	258
EcoT38I	GRGCYC	1 cut(s)	157
ErhI	CCWWGG	1 cut(s)	570
FaeI	CATG	3 cut(s)	260, 574, 642
FaqI	GGGAC	3 cut(s)	387, 401, 523
FatI	CATG	3 cut(s)	256, 570, 638
FauI	CCCGC	2 cut(s)	136, 183
FblI	GTMKAC	1 cut(s)	565
Fnu4HI	GCNGC	5 cut(s)	69, 294, 390, 428, 513
FokI	GGATG	1 cut(s)	317
FriOI	GRGCYC	1 cut(s)	157
Fsp4HI	GCNGC	5 cut(s)	69, 294, 390, 428, 513
FspBI	CTAG	1 cut(s)	326
GluI	GCNGC	5 cut(s)	69, 294, 390, 428, 513
GsuI	CTGGAG	1 cut(s)	621
HaeIII	GGCC	1 cut(s)	29
HapII	CCGG	1 cut(s)	541
Hin1II	CATG	3 cut(s)	260, 574, 642
HindIII	AAGCTT	1 cut(s)	627
HinfI	GANTC	2 cut(s)	329, 414
HpaII	CCGG	1 cut(s)	541
HphI	GGTGA	1 cut(s)	204
Hpy166II	GTNNAC	3 cut(s)	76, 278, 566
Hpy188I	TCNGA	1 cut(s)	479
Hpy188III	TCNNGA	7 cut(s)	98, 113, 326, 411, 464, 497, 522
Hpy8I	GTNNAC	3 cut(s)	76, 278, 566
HpyAV	CCTTC	1 cut(s)	547
HpyCH4III	ACNGT	3 cut(s)	244, 349, 367
HpyCH4V	TGCA	5 cut(s)	42, 50, 256, 512, 638
HpyF10VI	GCNNNNNNNGC	5 cut(s)	56, 65, 395, 512, 635
HpyF3I	CTNAG	1 cut(s)	476
Hsp92II	CATG	3 cut(s)	260, 574, 642
Kzo9I	GATC	3 cut(s)	127, 556, 650
LguI	GCTCTTC	1 cut(s)	180
LmnI	GCTCC	1 cut(s)	290
Lsp1109I	GCAGC	5 cut(s)	55, 280, 401, 439, 524
LweI	GCATC	1 cut(s)	298
MaeI	CTAG	1 cut(s)	326
MaeIII	GTNAC	1 cut(s)	210
MalI	GATC	3 cut(s)	129, 558, 652
MbiI	CCGCTC	1 cut(s)	190
MboI	GATC	3 cut(s)	127, 556, 650
MboII	GAAGA	6 cut(s)	101, 187, 197, 333, 413, 492
MflI	RGATCY	1 cut(s)	556
MhlI	GDGCHC	1 cut(s)	157
MluCI	AATT	1 cut(s)	234
MlyI	GAGTC	2 cut(s)	338, 423
MmeI	TCCRAC	1 cut(s)	526
MnlI	CCTC	6 cut(s)	19, 133, 409, 429, 496, 528
Mph1103I	ATGCAT	1 cut(s)	258
MroXI	GAANNNNTTC	1 cut(s)	321
MseI	TTAA	1 cut(s)	171
MspI	CCGG	1 cut(s)	541
MspR9I	CCNGG	2 cut(s)	541, 542
MwoI	GCNNNNNNNGC	5 cut(s)	56, 65, 395, 512, 635
NciI	CCSGG	2 cut(s)	541, 542
NcoI	CCATGG	1 cut(s)	570
NdeII	GATC	3 cut(s)	127, 556, 650
NlaIII	CATG	3 cut(s)	260, 574, 642
NlaIV	GGNNCC	3 cut(s)	375, 539, 558
NmuCI	GTSAC	1 cut(s)	210
NsiI	ATGCAT	1 cut(s)	258
NspI	RCATGY	1 cut(s)	642
PaeR7I	CTCGAG	1 cut(s)	522
PciSI	GCTCTTC	1 cut(s)	180
PdmI	GAANNNNTTC	1 cut(s)	321
PkrI	GCNGC	5 cut(s)	70, 295, 391, 429, 514
PleI	GAGTC	2 cut(s)	337, 422
PpsI	GAGTC	2 cut(s)	337, 422
PpuMI	RGGWCCY	1 cut(s)	537
Psp124BI	GAGCTC	1 cut(s)	157
Psp5II	RGGWCCY	1 cut(s)	537
PspN4I	GGNNCC	3 cut(s)	375, 539, 558
PspPI	GGNCC	5 cut(s)	28, 265, 374, 537, 593
PspPPI	RGGWCCY	1 cut(s)	537
PsuI	RGATCY	1 cut(s)	556
RsaI	GTAC	2 cut(s)	77, 241
RsaNI	GTAC	2 cut(s)	76, 240
SacI	GAGCTC	1 cut(s)	157
SapI	GCTCTTC	1 cut(s)	180
SaqAI	TTAA	1 cut(s)	171
SatI	GCNGC	5 cut(s)	69, 294, 390, 428, 513
Sau3AI	GATC	3 cut(s)	127, 556, 650
Sau96I	GGNCC	5 cut(s)	28, 265, 374, 537, 593
SchI	GAGTC	2 cut(s)	338, 423
ScrFI	CCNGG	2 cut(s)	541, 542
SduI	GDGCHC	1 cut(s)	157
SfaNI	GCATC	1 cut(s)	298
Sfr274I	CTCGAG	1 cut(s)	522
SinI	GGWCC	4 cut(s)	265, 374, 537, 593
SlaI	CTCGAG	1 cut(s)	522
SmaI	CCCGGG	1 cut(s)	542
SmlI	CTYRAG	1 cut(s)	522
SmoI	CTYRAG	1 cut(s)	522
Sse9I	AATT	1 cut(s)	234
SsiI	CCGC	3 cut(s)	143, 190, 591
SspMI	CTAG	1 cut(s)	326
SstI	GAGCTC	1 cut(s)	157
StyD4I	CCNGG	2 cut(s)	539, 540
StyI	CCWWGG	1 cut(s)	570
TaaI	ACNGT	3 cut(s)	244, 349, 367
TaqI	TCGA	3 cut(s)	126, 272, 523
TaqII	GACCGA	1 cut(s)	459
TasI	AATT	1 cut(s)	234
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TscAI	CASTG	1 cut(s)	439
TseFI	GTSAC	1 cut(s)	210
TseI	GCWGC	5 cut(s)	68, 293, 389, 427, 512
Tsp45I	GTSAC	1 cut(s)	210
TspDTI	ATGAA	3 cut(s)	273, 327, 372
TspMI	CCCGGG	1 cut(s)	540
TspRI	CASTG	1 cut(s)	439
VpaK11BI	GGWCC	4 cut(s)	265, 374, 537, 593
XagI	CCTNNNNNAGG	1 cut(s)	137
XapI	RAATTY	1 cut(s)	234
XbaI	TCTAGA	1 cut(s)	325
XceI	RCATGY	1 cut(s)	642
XhoI	CTCGAG	1 cut(s)	522
XmaI	CCCGGG	1 cut(s)	540
XmiI	GTMKAC	1 cut(s)	565
XmnI	GAANNNNTTC	1 cut(s)	321
XspI	CTAG	1 cut(s)	326
Zsp2I	ATGCAT	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.