Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8388145.1

Orthogroup ID

OG0013822

Physical Location & Seq

Genomic Coordinates Forward (+)

33 .. 1203

Gene Structure 1171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8388145.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 587 bp

atggtctttaacccattgtgcttgtcagaaaaaagtgctttggagcggttctgtgtggatctcactgctcgtgctagtgagggacgcattgatcctgttattggccgggatactgaagttcagagaattattcagatactttgtcgcagaactaaaaataatcccattcttctcggtcaaagtggggttggaaagacagccattgttgaaggtctggcaactagtattgcacaggcagatgtccctgtttatctgttgacaaaacgcgtaatgtctttggacgtggcactgttaatggctggtgcaaaggagaggggagagttggaggcgcgtgttacctccttaataagtgatgtacaaaaatcaggaaatgttattctgtttattgatgaagttcatactcttattgagtccggcacagttggacgaggaaataaggggtctggtcttgacattgctaatataatgaaaccggcacttgggaggggtaaattacagtgtattgcatcaactactaccgatgaatacaggatgcatcttgaaaaggataaagcatttggacgaagattccaacctgtctggatcaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009941 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0031967 GO:0031975 GO:0033554 GO:0034214 GO:0034605 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0047484 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050896 GO:0051259 GO:0051716 GO:0065003 GO:0065007 GO:0071840 GO:0080134 GO:1901000 GO:1901002 GO:1902584 GO:2000070

KEGG Pathways

Metabolic & Signaling

ko01100 map01100

Pfam Domains

Protein Families

AAA AAA_2 ClpB_D2-small Clp_N

Protein Analysis

195

Amino Acids

21.29

Weight (kDa)

8.96

Isoelectric Point (pI)

34.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51070
fragaria_vesca	FvH4_5g10020
malus_domestica	MD06G1128400.v1.1
prunus_persica	Prupe.5G138200_v2.0.a1
pyrus_communis	pycom06g11860
rosa_chinensis	RchiOBHm_Chr7g0188241
rosa_laevigata	RLG00000004715
rosa_multiflora	Rmu_co8357845.1_g000001 Rmu_co8388145.1_g000001 Rmu_sc0008750.1_g000013
rosa_roxburghii	Rroxscaffold_3G00266580
rosa_rugosa	Rorug06G0489400
rosa_samantha	Rh7AG093700 Rh7BG095100 Rh7CG095500 Rh7DG095700
rosa_wichuraiana	Rw7G008070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	46
AccII	CGCG	2 cut(s)	267, 331
AciI	CCGC	1 cut(s)	46
AclWI	GGATC	2 cut(s)	66, 86
AcoI	YGGCCR	1 cut(s)	103
AcuI	CTGAAG	1 cut(s)	135
AfaI	GTAC	1 cut(s)	357
AfiI	CCNNNNNNNGG	2 cut(s)	101, 479
AflIII	ACRYGT	1 cut(s)	265
AgsI	TTSAA	2 cut(s)	209, 542
AhlI	ACTAGT	1 cut(s)	221
AjiI	CACGTC	1 cut(s)	283
AlwI	GGATC	2 cut(s)	66, 86
AoxI	GGCC	1 cut(s)	103
AspLEI	GCGC	1 cut(s)	331
AsuC2I	CCSGG	1 cut(s)	107
BaeI	ACNNNNGTAYC	2 cut(s)	102, 135
BauI	CACGAG	1 cut(s)	69
BciVI	GTATCC	1 cut(s)	103
BcnI	CCSGG	1 cut(s)	107
BcuI	ACTAGT	1 cut(s)	221
BfaI	CTAG	2 cut(s)	75, 222
BfuI	GTATCC	1 cut(s)	103
Bme1390I	CCNGG	1 cut(s)	107
BmgBI	CACGTC	1 cut(s)	283
BmrFI	CCNGG	1 cut(s)	107
BmsI	GCATC	3 cut(s)	515, 522, 544
BpuMI	CCSGG	1 cut(s)	107
Bsc4I	CCNNNNNNNGG	2 cut(s)	101, 479
Bse118I	RCCGGY	1 cut(s)	472
Bse3DI	GCAATG	1 cut(s)	453
BseGI	GGATG	1 cut(s)	537
BseLI	CCNNNNNNNGG	2 cut(s)	101, 479
BseMI	GCAATG	1 cut(s)	453
Bsh1236I	CGCG	2 cut(s)	267, 331
BshFI	GGCC	1 cut(s)	105
BsiSI	CCGG	3 cut(s)	106, 414, 473
BslFI	GGGAC	2 cut(s)	96, 227
BslI	CCNNNNNNNGG	2 cut(s)	101, 479
BsmFI	GGGAC	2 cut(s)	96, 227
BsnI	GGCC	1 cut(s)	105
Bsp1407I	TGTACA	1 cut(s)	355
Bsp143I	GATC	3 cut(s)	58, 91, 582
BspACI	CCGC	1 cut(s)	46
BspANI	GGCC	1 cut(s)	105
BspFNI	CGCG	2 cut(s)	267, 331
BspPI	GGATC	2 cut(s)	66, 86
BsrBI	CCGCTC	1 cut(s)	46
BsrDI	GCAATG	1 cut(s)	453
BsrFI	RCCGGY	1 cut(s)	472
BsrGI	TGTACA	1 cut(s)	355
BssAI	RCCGGY	1 cut(s)	472
BssMI	GATC	3 cut(s)	58, 91, 582
BssSI	CACGAG	1 cut(s)	69
Bst2BI	CACGAG	1 cut(s)	69
Bst4CI	ACNGT	3 cut(s)	291, 421, 498
BstAUI	TGTACA	1 cut(s)	355
BstF5I	GGATG	1 cut(s)	537
BstFNI	CGCG	2 cut(s)	267, 331
BstHHI	GCGC	1 cut(s)	331
BstKTI	GATC	3 cut(s)	61, 94, 585
BstMBI	GATC	3 cut(s)	58, 91, 582
BstSCI	CCNGG	1 cut(s)	105
BstUI	CGCG	2 cut(s)	267, 331
BstX2I	RGATCY	1 cut(s)	58
BstYI	RGATCY	1 cut(s)	58
BsuI	GTATCC	1 cut(s)	103
BsuRI	GGCC	1 cut(s)	105
BtrI	CACGTC	1 cut(s)	283
BtsCI	GGATG	1 cut(s)	537
BtsI	GCAGTG	1 cut(s)	63
BtsIMutI	CAGTG	3 cut(s)	63, 287, 503
CfoI	GCGC	1 cut(s)	331
Cfr10I	RCCGGY	1 cut(s)	472
CseI	GACGC	1 cut(s)	93
Csp6I	GTAC	1 cut(s)	356
CviJI	RGCY	3 cut(s)	105, 200, 299
CviKI_1	RGCY	3 cut(s)	105, 200, 299
CviQI	GTAC	1 cut(s)	356
DpnI	GATC	3 cut(s)	60, 93, 584
DpnII	GATC	3 cut(s)	58, 91, 582
EaeI	YGGCCR	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	135
EcoT22I	ATGCAT	1 cut(s)	537
FaiI	YATR	2 cut(s)	399, 464
FaqI	GGGAC	2 cut(s)	96, 227
FokI	GGATG	1 cut(s)	544
FspBI	CTAG	2 cut(s)	75, 222
GlaI	GCGC	1 cut(s)	330
HaeIII	GGCC	1 cut(s)	105
HapII	CCGG	3 cut(s)	106, 414, 473
HgaI	GACGC	1 cut(s)	93
HhaI	GCGC	1 cut(s)	331
Hin6I	GCGC	1 cut(s)	329
HinP1I	GCGC	1 cut(s)	329
HincII	GTYRAC	1 cut(s)	258
HindII	GTYRAC	1 cut(s)	258
HinfI	GANTC	2 cut(s)	410, 567
HpaII	CCGG	3 cut(s)	106, 414, 473
Hpy166II	GTNNAC	1 cut(s)	258
Hpy188I	TCNGA	3 cut(s)	28, 123, 135
Hpy188III	TCNNGA	4 cut(s)	366, 449, 539, 580
Hpy8I	GTNNAC	1 cut(s)	258
HpyAV	CCTTC	1 cut(s)	203
HpyCH4III	ACNGT	3 cut(s)	291, 421, 498
HpyCH4IV	ACGT	1 cut(s)	282
HpyCH4V	TGCA	4 cut(s)	230, 305, 506, 535
HpySE526I	ACGT	1 cut(s)	282
HspAI	GCGC	1 cut(s)	329
Kzo9I	GATC	3 cut(s)	58, 91, 582
LmnI	GCTCC	1 cut(s)	43
LweI	GCATC	3 cut(s)	515, 522, 544
MaeI	CTAG	2 cut(s)	75, 222
MaeII	ACGT	1 cut(s)	282
MaeIII	GTNAC	1 cut(s)	334
MalI	GATC	3 cut(s)	60, 93, 584
MbiI	CCGCTC	1 cut(s)	46
MboI	GATC	3 cut(s)	58, 91, 582
MboII	GAAGA	2 cut(s)	161, 576
MflI	RGATCY	1 cut(s)	58
MluCI	AATT	2 cut(s)	126, 491
MluI	ACGCGT	1 cut(s)	265
MlyI	GAGTC	1 cut(s)	419
MmeI	TCCRAC	3 cut(s)	169, 303, 403
MnlI	CCTC	6 cut(s)	73, 306, 319, 349, 422, 477
Mph1103I	ATGCAT	1 cut(s)	537
MseI	TTAA	3 cut(s)	9, 293, 344
MspI	CCGG	3 cut(s)	106, 414, 473
MspR9I	CCNGG	1 cut(s)	107
MvnI	CGCG	2 cut(s)	267, 331
NciI	CCSGG	1 cut(s)	107
NdeII	GATC	3 cut(s)	58, 91, 582
NsiI	ATGCAT	1 cut(s)	537
PfeI	GAWTC	1 cut(s)	567
PleI	GAGTC	1 cut(s)	418
PpsI	GAGTC	1 cut(s)	418
PsuI	RGATCY	1 cut(s)	58
RsaI	GTAC	1 cut(s)	357
RsaNI	GTAC	1 cut(s)	356
SaqAI	TTAA	3 cut(s)	9, 293, 344
Sau3AI	GATC	3 cut(s)	58, 91, 582
SchI	GAGTC	1 cut(s)	419
ScrFI	CCNGG	1 cut(s)	107
SetI	ASST	4 cut(s)	214, 285, 341, 577
SfaNI	GCATC	3 cut(s)	515, 522, 544
SpeI	ACTAGT	1 cut(s)	221
Sse9I	AATT	2 cut(s)	126, 491
SsiI	CCGC	1 cut(s)	46
SspMI	CTAG	2 cut(s)	75, 222
StyD4I	CCNGG	1 cut(s)	105
TaaI	ACNGT	3 cut(s)	291, 421, 498
TaiI	ACGT	1 cut(s)	285
TaqII	GACCGA	1 cut(s)	164
TasI	AATT	2 cut(s)	126, 491
TatI	WGTACW	1 cut(s)	355
TfiI	GAWTC	1 cut(s)	567
Tru1I	TTAA	3 cut(s)	9, 293, 344
Tru9I	TTAA	3 cut(s)	9, 293, 344
TscAI	CASTG	3 cut(s)	70, 294, 503
TspDTI	ATGAA	4 cut(s)	386, 405, 482, 537
TspRI	CASTG	3 cut(s)	70, 294, 503
XspI	CTAG	2 cut(s)	75, 222
Zsp2I	ATGCAT	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.