Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0013822

Physical Location & Seq

Genomic Coordinates Reverse (-)

59802880 .. 59808222

Gene Structure 5343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00266580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2805 bp

ATGCATGTGTCGTCATCCTCCTCCGTGCTGATATCATCTCCACTCCAATGGAGAACTCCATCTCAACACGTATCATTCACTCATCTTCCCGTACAATCCGTTACGACTTCCACTAGTACTATCAGTTACGCCCGTGATGGCAGAAACGCCGTCGTTTCCCTCTACCCAATTCGCCTTATACGCAACCCATTTTCTTCTTCCTTCTTGTCCCAAACCAAAGCCGCTCCCTTTCGCGGCGGCCGGAGGAGAAAGAACTCGAAGCTCCAAATCGTCTCCGCCGTCTTCGAGCGGTTCACGGAGCGCGCGATCAAAGCCGTCATCTTTTCCCAGAGAGAAGCCAAAGCTCTGGGCCGGGACATGGTGTTTACCCAGCACCTCCTGCTCGGTTTGATCGCCGAGGAGGAGCAGCAGCATCGCCATCTTCATCCCAATTCGCGCGGGTTTCTCGGGTCGGGCATGACCCTGGAGCAGGCCCGCCGCGCCGTCCGGAGCATTTGGCGCCATAATAGTCAAAGTCAAGGTCAAGGTCAAGGTCAAGCTGCTTCTGCGGGTTCTGCTAGGGATCTCTCGTTTTCGATTAGCACAAAGAGAGTTCTGGAGGCTGCGCTGGAGTATTCGAGGAGTAGAGCTCATAATTTTATTGCACCGGAGCACATTGTCATCGGTTTATTGACTGTTGATGATGGGAGTGCTGGTCAGGTCCTTAAAAGACTGGGGGTAAATGTAAACCAGTTGTTAGCTGAGGCAGCCTCCAGACTTCAAATAGAGCTTGCCAAAGATGGTAGAGAACCATCTGGGGGATCTCAAAAGACGTTTTCTAAAAAGTCAACTGCATCGTCTGAGAAAACCAAAGAAAAAAGTGCTTTGGAGCGGTTCTGTGTGGATCTCACTGCTCGTGCTAGTGAGGGACGCATTGATCCTGTTATTGGCCGGGATACTGAAGTTCAGAGAATTATTCAGATACTTTGTCGCAGAACTAAAAATAATCCCATTCTTCTCGGTCAAAGTGGGGTTGGAAAGACAGCCATTGTTGAAGGTCTGGCAACTAGTATTGCACAGGCAGATGTCCCTGTTTATCTGTTGACAAAACGCATAATGTCTTTGGATGTGGCACTGTTAATGGCTGGCGCAAAGGAGAGGGGAGAGTTAGAGGCGCGTGTTACCTCCTTAATAAGTGATGTACAAAAATCAGGAAATGTTATTCTGTTTATTGATGAAGTTCATACCCTAATTGAGTCCGGCACAGTTGGACGAGGAAATAAGGGGTCTGGTCTTGACATTGCTAATATAATGAAACCGGCACTTGGGAGGGGTAAATTACAGTGTATTGCATCAACTACTACCGATGAATACAGGATGCATCTTGAAAAGGATAAAGCATTTGGACGAAGATTCCAACCTGTCTGGATCAATGAACCAAGCCAGGATGATGCAGTTAGGATTCTGTTTGGTTTGCGTGAGAAATATGAGGCCCATCACAACTGCATATATGCACCAGAAGCCATTAGCGCTGCTGTGTACCTTTCAGCAAGATATATTCCTGATAGATATCTTCCTGATAAAGCTATCGATCTCCTTGATGAGGCGGGAAGTAGAGCTCTTCAGGCAATGCATGAAGTGGTCCTATCGAGTGAACTGAAAAATGGAGCTGCTTCTGTGGATGATACCAGAGAACATATTCTAGAGTCCATTTCATCTTCTGCAGTAGATGATGAACCTACTGTGGTGGGACCAAATGATATAGCAGCAGTTGCCTCACTATGGTCAGGAGTCCCTCTTCAGCAGCTCACTGCTGATGACCAACTGCTTTTGGTGGGTCTTGATGAGAAGCTCAGAAGACGGGTTGTTGGTCAAGATGAGGCTGTTGCAGCCATTTCTCGAGCTGTTAGGAGGTCCCGGGTTGGATTGAAGGATCCAAGTAGACCCATGGCAACAATGCTCTTTTGCGGTCCTACTGGAGTTGGCAAAACTGAACTGACAAAAGCTTTGTCTGCATGTTATTTTGGATCGGAGGAAGCTATGGTACGACTGGACATGAGTGAATATATGGAGCGGCACTCTGTCAGCAAATTAATAGGGTCACCCCCAGGCTATGTTGGCTTTGGAGAGGGAGGCACCCTAACAGAAGCTATCAGAAGACGACCTTTTACAGTAGTTGTACTTGATGAAATCGAGAAGGCCCATCCAGATATATTCAACATCCTTCTCCAAATATTTGAAGATGGCCACCTTACTGATTCTCAGGGACGGAGAGTATCGTTTAAGAATGCTTTGGTAGTGATGACATCTAATGTGGGTTCCACTATCATTGCAAAGGGTCGAAAAAGCTCCATTGGTTTTGTGCTTACAGACGATGAGTCAAGTACATATGCCGGGATAAAAGCAACAGTAATGGAAGAACTCAAGTCATATTTTCGTCCAGAGTTGCTCAACAGGATAGACGAAGTAGTTGTATTCCATCCCCTTGAAAAGTCTCAGATGCTGGAGATTGTAAATATAATGCTACAAGAAGTGAAGCAGAGGCTAATATCTCTGGGAATTGGACTAGAGGTGTCTGAATCAGTCAAGAACCTCATATGCAAAGAAGGCTATGATCGGATCTATGGTGCTCGCCCTCTTAGACGAGCAATTACATTAATAATTGAAGACCCATTGAGTGAGGCCCTCCTTGCTGGAGTTTACCAGCCTGGTGACACTGCCGTCATTGATTTAGATGCTTCTGGGAAACCTTCTGTAAGTAATGGATCAGGTCAGAGTAGCATCCCTTTCTCTAAAACCAATATACAGCATCCATCTTGTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009941 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0031967 GO:0031975 GO:0033554 GO:0034214 GO:0034605 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0047484 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050896 GO:0051259 GO:0051716 GO:0065003 GO:0065007 GO:0071840 GO:0080134 GO:1901000 GO:1901002 GO:1902584 GO:2000070

KEGG Pathways

Metabolic & Signaling

ko01100 map01100

Pfam Domains

Protein Families

AAA AAA_2 ClpB_D2-small Clp_N

Protein Analysis

934

Amino Acids

102.11

Weight (kDa)

8.82

Isoelectric Point (pI)

51.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Clp_N	PF02861	191 - 261	2.8e-11	Clp repeat (R) N-terminal domain
AAA_16	PF13191	308 - 361	7.7e-06	AAA ATPase domain
NBD_SMAX1	PF23569	314 - 415	4.8e-06	SMAX1 nucleotide binding domain
AAA	PF00004	331 - 447	6.6e-09	ATPase family associated with various cellular activities (AAA)
AAA_lid_9	PF17871	474 - 554	2.8e-24	AAA lid domain
AAA_2	PF07724	641 - 816	2.9e-63	AAA domain (Cdc48 subfamily)
AAA_5	PF07728	646 - 766	7.5e-11	AAA domain (dynein-related subfamily)
ClpB_D2-small	PF10431	822 - 901	2.8e-23	C-terminal, D2-small domain, of ClpB protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51070
fragaria_vesca	FvH4_5g10020
malus_domestica	MD06G1128400.v1.1
prunus_persica	Prupe.5G138200_v2.0.a1
pyrus_communis	pycom06g11860
rosa_chinensis	RchiOBHm_Chr7g0188241
rosa_laevigata	RLG00000004715
rosa_multiflora	Rmu_co8357845.1_g000001 Rmu_co8388145.1_g000001 Rmu_sc0008750.1_g000013
rosa_roxburghii	Rroxscaffold_3G00266580
rosa_rugosa	Rorug06G0489400
rosa_samantha	Rh7AG093700 Rh7BG095100 Rh7CG095500 Rh7DG095700
rosa_wichuraiana	Rw7G008070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2699
AccB1I	GGYRCC	2 cut(s)	498, 2114
AccBSI	CCGCTC	4 cut(s)	224, 289, 871, 2053
AccI	GTMKAC	1 cut(s)	1921
AccII	CGCG	7 cut(s)	234, 303, 305, 436, 438, 480, 1156
AccIII	TCCGGA	1 cut(s)	486
AcoI	YGGCCR	3 cut(s)	238, 928, 2224
AcuI	CTGAAG	3 cut(s)	960, 1586, 1763
AcyI	GRCGYC	1 cut(s)	499
AfaI	GTAC	7 cut(s)	93, 118, 1182, 1520, 2025, 2160, 2365
AfeI	AGCGCT	1 cut(s)	1510
AfiI	CCNNNNNNNGG	8 cut(s)	233, 358, 469, 797, 926, 1304, 1582, 1761
AflIII	ACRYGT	1 cut(s)	67
AgsI	TTSAA	8 cut(s)	761, 1034, 1367, 1909, 2197, 2219, 2468, 2645
AhdI	GACNNNNNGTC	1 cut(s)	2356
AhlI	ACTAGT	2 cut(s)	113, 1046
AjnI	CCWGG	4 cut(s)	462, 1422, 2086, 2686
Alw21I	GWGCWC	4 cut(s)	631, 654, 1600, 2611
Alw26I	GTCTC	2 cut(s)	277, 2478
AlwNI	CAGNNNCTG	1 cut(s)	2482
Ama87I	CYCGRG	3 cut(s)	446, 1878, 1896
Aor13HI	TCCGGA	1 cut(s)	486
Aor51HI	AGCGCT	1 cut(s)	1510
AoxI	GGCC	8 cut(s)	238, 349, 471, 928, 1470, 2178, 2224, 2661
ArsI	GACNNNNNNTTYG	6 cut(s)	505, 537, 1969, 1973, 2001, 2005
AseI	ATTAAT	2 cut(s)	2072, 2636
Asp700I	GAANNNNTTC	1 cut(s)	1677
AspLEI	GCGC	9 cut(s)	303, 305, 438, 482, 501, 607, 1130, 1156, 1511
AsuC2I	CCSGG	5 cut(s)	353, 932, 1897, 1898, 2374
AsuHPI	GGTGA	2 cut(s)	2073, 2702
AvaI	CYCGRG	3 cut(s)	446, 1878, 1896
AvaII	GGWCC	5 cut(s)	700, 1621, 1730, 1893, 1949
BaeI	ACNNNNGTAYC	2 cut(s)	927, 960
BalI	TGGCCA	1 cut(s)	2226
BamHI	GGATCC	1 cut(s)	1912
BanI	GGYRCC	2 cut(s)	498, 2114
BanII	GRGCYC	2 cut(s)	631, 1600
BarI	GAAGNNNNNNTAC	2 cut(s)	2007, 2039
BauI	CACGAG	1 cut(s)	894
BbsI	GAAGAC	4 cut(s)	274, 1843, 2143, 2652
Bbv12I	GWGCWC	4 cut(s)	631, 654, 1600, 2611
BbvCI	CCTCAGC	1 cut(s)	741
BceAI	ACGGC	5 cut(s)	134, 263, 299, 467, 2684
BcgI	CGANNNNNNTGC	2 cut(s)	395, 429
BciT130I	CCWGG	4 cut(s)	464, 1424, 2088, 2688
BciVI	GTATCC	1 cut(s)	928
BcnI	CCSGG	5 cut(s)	353, 932, 1897, 1898, 2374
BcoDI	GTCTC	2 cut(s)	277, 2478
BcuI	ACTAGT	2 cut(s)	113, 1046
BfaI	CTAG	6 cut(s)	114, 558, 900, 1047, 1682, 2546
BfmI	CTRYAG	1 cut(s)	1701
BfoI	RGCGCY	2 cut(s)	502, 1512
BfuI	GTATCC	1 cut(s)	928
BmcAI	AGTACT	1 cut(s)	118
Bme1390I	CCNGG	9 cut(s)	353, 464, 932, 1424, 1897, 1898, 2088, 2374, 2688
Bme18I	GGWCC	5 cut(s)	700, 1621, 1730, 1893, 1949
BmeRI	GACNNNNNGTC	1 cut(s)	2356
BmeT110I	CYCGRG	3 cut(s)	446, 1878, 1896
BmiI	GGNNCC	6 cut(s)	500, 1731, 1895, 1914, 2116, 2299
BmrFI	CCNGG	9 cut(s)	353, 464, 932, 1424, 1897, 1898, 2088, 2374, 2688
BmrI	ACTGGG	1 cut(s)	722
BmuI	ACTGGG	1 cut(s)	722
BpiI	GAAGAC	4 cut(s)	274, 1843, 2143, 2652
BplI	GAGNNNNNCTC	6 cut(s)	613, 645, 734, 766, 2042, 2074
BpmI	CTGGAG	7 cut(s)	485, 617, 629, 736, 1977, 2504, 2694
Bpu10I	CCTNAGC	1 cut(s)	741
BpuEI	CTTGAG	1 cut(s)	2387
BpuMI	CCSGG	5 cut(s)	353, 932, 1897, 1898, 2374
Bsa29I	ATCGAT	1 cut(s)	1569
BsaAI	YACGTR	1 cut(s)	70
BsaBI	GATNNNNATC	1 cut(s)	1548
BsaHI	GRCGYC	1 cut(s)	499
BsaJI	CCNNGG	5 cut(s)	396, 462, 1896, 1926, 2086
BsaWI	WCCGGW	2 cut(s)	486, 646
BsaXI	ACNNNNNCTCC	2 cut(s)	679, 709
Bsc4I	CCNNNNNNNGG	8 cut(s)	233, 358, 469, 797, 926, 1304, 1582, 1761
Bse118I	RCCGGY	1 cut(s)	1297
Bse1I	ACTGG	4 cut(s)	717, 730, 1960, 2034
Bse3DI	GCAATG	3 cut(s)	1278, 1614, 2307
Bse8I	GATNNNNATC	1 cut(s)	1548
BseAI	TCCGGA	1 cut(s)	486
BseBI	CCWGG	4 cut(s)	464, 1424, 2088, 2688
BseCI	ATCGAT	1 cut(s)	1569
BseDI	CCNNGG	5 cut(s)	396, 462, 1896, 1926, 2086
BseJI	GATNNNNATC	1 cut(s)	1548
BseLI	CCNNNNNNNGG	8 cut(s)	233, 358, 469, 797, 926, 1304, 1582, 1761
BseMI	GCAATG	3 cut(s)	1278, 1614, 2307
BseMII	CTCAG	5 cut(s)	732, 831, 1846, 2255, 2489
BseNI	ACTGG	4 cut(s)	717, 730, 1960, 2034
BsePI	GCGCGC	1 cut(s)	301
BseRI	GAGGAG	5 cut(s)	10, 259, 413, 416, 634
BseX3I	CGGCCG	1 cut(s)	238
BseYI	CCCAGC	1 cut(s)	369
Bsh1236I	CGCG	7 cut(s)	234, 303, 305, 436, 438, 480, 1156
Bsh1285I	CGRYCG	1 cut(s)	241
BshFI	GGCC	8 cut(s)	240, 351, 473, 930, 1472, 2180, 2226, 2663
BshNI	GGYRCC	2 cut(s)	498, 2114
BshVI	ATCGAT	1 cut(s)	1569
BsiEI	CGRYCG	1 cut(s)	241
BsiHKAI	GWGCWC	4 cut(s)	631, 654, 1600, 2611
BsiHKCI	CYCGRG	3 cut(s)	446, 1878, 1896
BsiSI	CCGG	9 cut(s)	241, 352, 487, 647, 931, 1239, 1298, 1897, 2373
BslFI	GGGAC	8 cut(s)	193, 368, 921, 1052, 1743, 1757, 1879, 2259
BslI	CCNNNNNNNGG	8 cut(s)	233, 358, 469, 797, 926, 1304, 1582, 1761
BsmAI	GTCTC	2 cut(s)	277, 2478
BsmBI	CGTCTC	1 cut(s)	277
BsmFI	GGGAC	8 cut(s)	193, 368, 921, 1052, 1743, 1757, 1879, 2259
BsmI	GAATGC	1 cut(s)	2272
BsnI	GGCC	8 cut(s)	240, 351, 473, 930, 1472, 2180, 2226, 2663
BsoBI	CYCGRG	3 cut(s)	446, 1878, 1896
Bsp1286I	GDGCHC	4 cut(s)	631, 654, 1600, 2611
Bsp13I	TCCGGA	1 cut(s)	486
Bsp1407I	TGTACA	1 cut(s)	1180
Bsp19I	CCATGG	1 cut(s)	1926
BspANI	GGCC	8 cut(s)	240, 351, 473, 930, 1472, 2180, 2226, 2663
BspCNI	CTCAG	5 cut(s)	733, 832, 1845, 2254, 2488
BspDI	ATCGAT	1 cut(s)	1569
BspEI	TCCGGA	1 cut(s)	486
BspFNI	CGCG	7 cut(s)	234, 303, 305, 436, 438, 480, 1156
BspLI	GGNNCC	6 cut(s)	500, 1731, 1895, 1914, 2116, 2299
BspMAI	CTGCAG	1 cut(s)	1705
BspQI	GCTCTTC	1 cut(s)	1605
BspT107I	GGYRCC	2 cut(s)	498, 2114
BsrBI	CCGCTC	4 cut(s)	224, 289, 871, 2053
BsrDI	GCAATG	3 cut(s)	1278, 1614, 2307
BsrFI	RCCGGY	1 cut(s)	1297
BsrGI	TGTACA	1 cut(s)	1180
BsrI	ACTGG	4 cut(s)	717, 730, 1960, 2034
BssAI	RCCGGY	1 cut(s)	1297
BssECI	CCNNGG	5 cut(s)	396, 462, 1896, 1926, 2086
BssHII	GCGCGC	1 cut(s)	301
BssNI	GRCGYC	1 cut(s)	499
BssSI	CACGAG	1 cut(s)	894
BssT1I	CCWWGG	1 cut(s)	1926
Bst2BI	CACGAG	1 cut(s)	894
Bst2UI	CCWGG	4 cut(s)	464, 1424, 2088, 2688
Bst4CI	ACNGT	7 cut(s)	676, 1116, 1246, 1323, 1723, 2152, 2389
Bst6I	CTCTTC	2 cut(s)	1605, 1782
BstACI	GRCGYC	1 cut(s)	499
BstAPI	GCANNNNNTGC	2 cut(s)	379, 1751
BstAUI	TGTACA	1 cut(s)	1180
BstBAI	YACGTR	1 cut(s)	70
BstC8I	GCNNGC	6 cut(s)	303, 471, 475, 771, 1126, 2611
BstDEI	CTNAG	6 cut(s)	741, 840, 1832, 2241, 2475, 2618
BstDSI	CCRYGG	1 cut(s)	1926
BstEII	GGTNACC	1 cut(s)	2079
BstENI	CCTNNNNNAGG	2 cut(s)	467, 1580
BstFNI	CGCG	7 cut(s)	234, 303, 305, 436, 438, 480, 1156
BstH2I	RGCGCY	2 cut(s)	502, 1512
BstHHI	GCGC	9 cut(s)	303, 305, 438, 482, 501, 607, 1130, 1156, 1511
BstMAI	GTCTC	2 cut(s)	277, 2478
BstMCI	CGRYCG	1 cut(s)	241
BstNI	CCWGG	4 cut(s)	464, 1424, 2088, 2688
BstNSI	RCATGY	2 cut(s)	8, 1998
BstPI	GGTNACC	1 cut(s)	2079
BstSCI	CCNGG	9 cut(s)	351, 462, 930, 1422, 1895, 1896, 2086, 2372, 2686
BstSFI	CTRYAG	1 cut(s)	1701
BstUI	CGCG	7 cut(s)	234, 303, 305, 436, 438, 480, 1156
BstV2I	GAAGAC	4 cut(s)	274, 1843, 2143, 2652
BstX2I	RGATCY	5 cut(s)	562, 800, 883, 1912, 2598
BstXI	CCANNNNNNTGG	2 cut(s)	48, 346
BstYI	RGATCY	5 cut(s)	562, 800, 883, 1912, 2598
BstZI	CGGCCG	1 cut(s)	238
Bsu15I	ATCGAT	1 cut(s)	1569
BsuI	GTATCC	1 cut(s)	928
BsuRI	GGCC	8 cut(s)	240, 351, 473, 930, 1472, 2180, 2226, 2663
BsuTUI	ATCGAT	1 cut(s)	1569
BtgI	CCRYGG	1 cut(s)	1926
BtgZI	GCGATG	1 cut(s)	398
BtsI	GCAGTG	3 cut(s)	888, 1788, 2694
BtsIMutI	CAGTG	5 cut(s)	888, 1112, 1328, 1788, 2694
Cac8I	GCNNGC	6 cut(s)	303, 471, 475, 771, 1126, 2611
CaiI	CAGNNNCTG	1 cut(s)	2482
CfoI	GCGC	9 cut(s)	303, 305, 438, 482, 501, 607, 1130, 1156, 1511
Cfr10I	RCCGGY	1 cut(s)	1297
Cfr9I	CCCGGG	1 cut(s)	1896
ClaI	ATCGAT	1 cut(s)	1569
CseI	GACGC	1 cut(s)	918
Csp6I	GTAC	7 cut(s)	92, 117, 1181, 1519, 2024, 2159, 2364
CspCI	CAANNNNNGTGG	2 cut(s)	2290, 2325
CviAII	CATG	7 cut(s)	5, 358, 457, 1613, 1927, 1995, 2035
CviQI	GTAC	7 cut(s)	92, 117, 1181, 1519, 2024, 2159, 2364
DdeI	CTNAG	6 cut(s)	741, 840, 1832, 2241, 2475, 2618
DinI	GGCGCC	1 cut(s)	500
DrdI	GACNNNNNNGTC	1 cut(s)	2699
DriI	GACNNNNNGTC	1 cut(s)	2356
DseDI	GACNNNNNNGTC	1 cut(s)	2699
EaeI	YGGCCR	3 cut(s)	238, 928, 2224
EagI	CGGCCG	1 cut(s)	238
Eam1104I	CTCTTC	2 cut(s)	1605, 1782
Eam1105I	GACNNNNNGTC	1 cut(s)	2356
EarI	CTCTTC	2 cut(s)	1605, 1782
EciI	GGCGGA	1 cut(s)	265
Ecl136II	GAGCTC	2 cut(s)	629, 1598
EclXI	CGGCCG	1 cut(s)	238
Eco130I	CCWWGG	1 cut(s)	1926
Eco24I	GRGCYC	2 cut(s)	631, 1600
Eco32I	GATATC	2 cut(s)	33, 1550
Eco47I	GGWCC	5 cut(s)	700, 1621, 1730, 1893, 1949
Eco47III	AGCGCT	1 cut(s)	1510
Eco52I	CGGCCG	1 cut(s)	238
Eco53kI	GAGCTC	2 cut(s)	629, 1598
Eco57I	CTGAAG	3 cut(s)	960, 1586, 1763
Eco88I	CYCGRG	3 cut(s)	446, 1878, 1896
Eco91I	GGTNACC	1 cut(s)	2079
EcoICRI	GAGCTC	2 cut(s)	629, 1598
EcoNI	CCTNNNNNAGG	2 cut(s)	467, 1580
EcoO109I	RGGNCCY	3 cut(s)	700, 1893, 2662
EcoO65I	GGTNACC	1 cut(s)	2079
EcoRII	CCWGG	4 cut(s)	462, 1422, 2086, 2686
EcoRV	GATATC	2 cut(s)	33, 1550
EcoT14I	CCWWGG	1 cut(s)	1926
EcoT22I	ATGCAT	3 cut(s)	6, 1362, 1614
EcoT38I	GRGCYC	2 cut(s)	631, 1600
EgeI	GGCGCC	1 cut(s)	500
EheI	GGCGCC	1 cut(s)	500
ErhI	CCWWGG	1 cut(s)	1926
Esp3I	CGTCTC	1 cut(s)	277
FaeI	CATG	7 cut(s)	8, 361, 460, 1616, 1930, 1998, 2038
FalI	AAGNNNNNCTT	2 cut(s)	2128, 2160
FaqI	GGGAC	8 cut(s)	193, 368, 921, 1052, 1743, 1757, 1879, 2259
FatI	CATG	7 cut(s)	4, 357, 456, 1612, 1926, 1994, 2034
FauI	CCCGC	4 cut(s)	431, 482, 541, 1579
FauNDI	CATATG	2 cut(s)	2368, 2576
FblI	GTMKAC	1 cut(s)	1921
FriOI	GRGCYC	2 cut(s)	631, 1600
FspBI	CTAG	6 cut(s)	114, 558, 900, 1047, 1682, 2546
GlaI	GCGC	9 cut(s)	302, 304, 437, 481, 500, 606, 1129, 1155, 1510
GsaI	CCCAGC	1 cut(s)	373
GsuI	CTGGAG	7 cut(s)	485, 617, 629, 736, 1977, 2504, 2694
HaeII	RGCGCY	2 cut(s)	502, 1512
HaeIII	GGCC	8 cut(s)	240, 351, 473, 930, 1472, 2180, 2226, 2663
HapII	CCGG	9 cut(s)	241, 352, 487, 647, 931, 1239, 1298, 1897, 2373
HgaI	GACGC	1 cut(s)	918
HhaI	GCGC	9 cut(s)	303, 305, 438, 482, 501, 607, 1130, 1156, 1511
Hin1I	GRCGYC	1 cut(s)	499
Hin1II	CATG	7 cut(s)	8, 361, 460, 1616, 1930, 1998, 2038
Hin6I	GCGC	9 cut(s)	301, 303, 436, 480, 499, 605, 1128, 1154, 1509
HinP1I	GCGC	9 cut(s)	301, 303, 436, 480, 499, 605, 1128, 1154, 1509
HincII	GTYRAC	2 cut(s)	828, 1083
HindII	GTYRAC	2 cut(s)	828, 1083
HindIII	AAGCTT	1 cut(s)	1983
HinfI	GANTC	8 cut(s)	1235, 1392, 1441, 1685, 1770, 2237, 2357, 2558
HpaII	CCGG	9 cut(s)	241, 352, 487, 647, 931, 1239, 1298, 1897, 2373
HphI	GGTGA	2 cut(s)	2073, 2702
Hpy166II	GTNNAC	9 cut(s)	294, 366, 727, 828, 1083, 1519, 1634, 1922, 2680
Hpy8I	GTNNAC	9 cut(s)	294, 366, 727, 828, 1083, 1519, 1634, 1922, 2680
Hpy99I	CGWCG	1 cut(s)	155
HpyAV	CCTTC	7 cut(s)	211, 1028, 1903, 2170, 2213, 2579, 2739
HpyCH4III	ACNGT	7 cut(s)	676, 1116, 1246, 1323, 1723, 2152, 2389
HpyCH4IV	ACGT	2 cut(s)	69, 812
HpyF3I	CTNAG	6 cut(s)	741, 840, 1832, 2241, 2475, 2618
HpySE526I	ACGT	2 cut(s)	69, 812
Hsp92I	GRCGYC	1 cut(s)	499
Hsp92II	CATG	7 cut(s)	8, 361, 460, 1616, 1930, 1998, 2038
HspAI	GCGC	9 cut(s)	301, 303, 436, 480, 499, 605, 1128, 1154, 1509
KasI	GGCGCC	1 cut(s)	498
Kpn2I	TCCGGA	1 cut(s)	486
LguI	GCTCTTC	1 cut(s)	1605
MaeI	CTAG	6 cut(s)	114, 558, 900, 1047, 1682, 2546
MaeII	ACGT	2 cut(s)	69, 812
MaeIII	GTNAC	5 cut(s)	100, 125, 1159, 2079, 2690
MbiI	CCGCTC	4 cut(s)	224, 289, 871, 2053
MflI	RGATCY	5 cut(s)	562, 800, 883, 1912, 2598
MhlI	GDGCHC	4 cut(s)	631, 654, 1600, 2611
MlsI	TGGCCA	1 cut(s)	2226
MluNI	TGGCCA	1 cut(s)	2226
Mly113I	GGCGCC	1 cut(s)	499
MlyI	GAGTC	4 cut(s)	1244, 1694, 1779, 2366
MmeI	TCCRAC	4 cut(s)	994, 1228, 1420, 1882
Mox20I	TGGCCA	1 cut(s)	2226
Mph1103I	ATGCAT	3 cut(s)	6, 1362, 1614
MroI	TCCGGA	1 cut(s)	486
MroXI	GAANNNNTTC	1 cut(s)	1677
MscI	TGGCCA	1 cut(s)	2226
MseI	TTAA	7 cut(s)	705, 1118, 1169, 2072, 2262, 2636, 2803
MslI	CAYNNNNRTG	1 cut(s)	46
Msp20I	TGGCCA	1 cut(s)	2226
MspI	CCGG	9 cut(s)	241, 352, 487, 647, 931, 1239, 1298, 1897, 2373
MspR9I	CCNGG	9 cut(s)	353, 464, 932, 1424, 1897, 1898, 2088, 2374, 2688
Mva1269I	GAATGC	1 cut(s)	2272
MvaI	CCWGG	4 cut(s)	464, 1424, 2088, 2688
MvnI	CGCG	7 cut(s)	234, 303, 305, 436, 438, 480, 1156
NarI	GGCGCC	1 cut(s)	499
NciI	CCSGG	5 cut(s)	353, 932, 1897, 1898, 2374
NcoI	CCATGG	1 cut(s)	1926
NdeI	CATATG	2 cut(s)	2368, 2576
NlaIII	CATG	7 cut(s)	8, 361, 460, 1616, 1930, 1998, 2038
NlaIV	GGNNCC	6 cut(s)	500, 1731, 1895, 1914, 2116, 2299
NmeAIII	GCCGAG	1 cut(s)	421
NmuCI	GTSAC	2 cut(s)	2079, 2690
NsiI	ATGCAT	3 cut(s)	6, 1362, 1614
NspI	RCATGY	2 cut(s)	8, 1998
PaeR7I	CTCGAG	1 cut(s)	1878
PauI	GCGCGC	1 cut(s)	301
PciSI	GCTCTTC	1 cut(s)	1605
PcsI	WCGNNNNNNNCGW	2 cut(s)	276, 302
PctI	GAATGC	1 cut(s)	2272
PdmI	GAANNNNTTC	1 cut(s)	1677
PfeI	GAWTC	4 cut(s)	1392, 1441, 2237, 2558
PleI	GAGTC	4 cut(s)	1243, 1693, 1778, 2365
PluTI	GGCGCC	1 cut(s)	502
PpsI	GAGTC	4 cut(s)	1243, 1693, 1778, 2365
Ppu21I	YACGTR	1 cut(s)	70
PpuMI	RGGWCCY	2 cut(s)	700, 1893
PshBI	ATTAAT	2 cut(s)	2072, 2636
Psp124BI	GAGCTC	2 cut(s)	631, 1600
Psp5II	RGGWCCY	2 cut(s)	700, 1893
Psp6I	CCWGG	4 cut(s)	462, 1422, 2086, 2686
PspEI	GGTNACC	1 cut(s)	2079
PspFI	CCCAGC	1 cut(s)	369
PspGI	CCWGG	4 cut(s)	462, 1422, 2086, 2686
PspN4I	GGNNCC	6 cut(s)	500, 1731, 1895, 1914, 2116, 2299
PspPPI	RGGWCCY	2 cut(s)	700, 1893
PstI	CTGCAG	1 cut(s)	1705
PstNI	CAGNNNCTG	1 cut(s)	2482
PsuI	RGATCY	5 cut(s)	562, 800, 883, 1912, 2598
PteI	GCGCGC	1 cut(s)	301
RsaI	GTAC	7 cut(s)	93, 118, 1182, 1520, 2025, 2160, 2365
RsaNI	GTAC	7 cut(s)	92, 117, 1181, 1519, 2024, 2159, 2364
RseI	CAYNNNNRTG	1 cut(s)	46
SacI	GAGCTC	2 cut(s)	631, 1600
SapI	GCTCTTC	1 cut(s)	1605
SaqAI	TTAA	7 cut(s)	705, 1118, 1169, 2072, 2262, 2636, 2803
ScaI	AGTACT	1 cut(s)	118
SchI	GAGTC	4 cut(s)	1244, 1694, 1779, 2366
ScrFI	CCNGG	9 cut(s)	353, 464, 932, 1424, 1897, 1898, 2088, 2374, 2688
SduI	GDGCHC	4 cut(s)	631, 654, 1600, 2611
SfcI	CTRYAG	1 cut(s)	1701
SfoI	GGCGCC	1 cut(s)	500
Sfr274I	CTCGAG	1 cut(s)	1878
SinI	GGWCC	5 cut(s)	700, 1621, 1730, 1893, 1949
SlaI	CTCGAG	1 cut(s)	1878
SmaI	CCCGGG	1 cut(s)	1898
SmiMI	CAYNNNNRTG	1 cut(s)	46
SmlI	CTYRAG	2 cut(s)	1878, 2402
SmoI	CTYRAG	2 cut(s)	1878, 2402
SpeI	ACTAGT	2 cut(s)	113, 1046
SspDI	GGCGCC	1 cut(s)	498
SspI	AATATT	1 cut(s)	2214
SspMI	CTAG	6 cut(s)	114, 558, 900, 1047, 1682, 2546
SstI	GAGCTC	2 cut(s)	631, 1600
StyD4I	CCNGG	9 cut(s)	351, 462, 930, 1422, 1895, 1896, 2086, 2372, 2686
StyI	CCWWGG	1 cut(s)	1926
TaaI	ACNGT	7 cut(s)	676, 1116, 1246, 1323, 1723, 2152, 2389
TaiI	ACGT	2 cut(s)	72, 815
TaqI	TCGA	9 cut(s)	257, 285, 575, 617, 1569, 1628, 1879, 2172, 2320
TaqII	GACCGA	1 cut(s)	989
TatI	WGTACW	4 cut(s)	116, 1180, 2158, 2363
TauI	GCSGC	5 cut(s)	224, 237, 240, 480, 2056
TfiI	GAWTC	4 cut(s)	1392, 1441, 2237, 2558
Tru1I	TTAA	7 cut(s)	705, 1118, 1169, 2072, 2262, 2636, 2803
Tru9I	TTAA	7 cut(s)	705, 1118, 1169, 2072, 2262, 2636, 2803
TscAI	CASTG	5 cut(s)	895, 1119, 1328, 1795, 2701
TseFI	GTSAC	2 cut(s)	2079, 2690
Tsp45I	GTSAC	2 cut(s)	2079, 2690
TspGWI	ACGGA	4 cut(s)	13, 88, 311, 2263
TspMI	CCCGGG	1 cut(s)	1896
TspRI	CASTG	5 cut(s)	895, 1119, 1328, 1795, 2701
VpaK11BI	GGWCC	5 cut(s)	700, 1621, 1730, 1893, 1949
VspI	ATTAAT	2 cut(s)	2072, 2636
XagI	CCTNNNNNAGG	2 cut(s)	467, 1580
XbaI	TCTAGA	1 cut(s)	1681
XceI	RCATGY	2 cut(s)	8, 1998
XhoI	CTCGAG	1 cut(s)	1878
XmaI	CCCGGG	1 cut(s)	1896
XmiI	GTMKAC	1 cut(s)	1921
XmnI	GAANNNNTTC	1 cut(s)	1677
XspI	CTAG	6 cut(s)	114, 558, 900, 1047, 1682, 2546
ZrmI	AGTACT	1 cut(s)	118
Zsp2I	ATGCAT	3 cut(s)	6, 1362, 1614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.