Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0013822

Physical Location & Seq

Genomic Coordinates Forward (+)

7413933 .. 7418968

Gene Structure 5036 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G008070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2895 bp

ATGCATGTGTCGTCATCCTCCTCCGTGCTGATATCATCTCCACTCCAATGGAGAACTCCCTCTCAACACGTATCATTCACTCATCTTCCCCTACAATCCGTTACGACTTGCACTGCTATCAGTTACGCCCGTGATCGCAGAAACGCCGTCGTTTCCCTCTACCCAATTCGCCTTATACACAACCCATTTTCTTCTTCCTTCTTGTCCCAAACCAAAGCCGCTCCCTTTCACGGCGGCCGGAGGAGAAAGAACTCGAAGCTCCAAATCGTCTCCGCCGTCTTCGAGCGGTTCACGGAGCGCGCGATCAAAGCCGTCATCTTTTCCCAGAGAGAAGCCAAAGCTCTGGGCCGGGACATGGTGTTTACTCAGCACCTCTTGCTCGGTTTGATCGCCGAGGAGGAGCAGCAGCATCGCCATCTTCATCCCAATTCGCGCGGGTTTCTCGGGTCGGGCATGACCCTGGAGCAGGCCCGCCGCGCCGTCCGGAGCATTTGGCGGCATAATAGTCAAAGTCAAAGTCAAGGTCAAGCTGCTTCTGCTGCTGGTTCGGGCTCTGCTAGGGATCTCTCGTTTTCGATTAGCACAAAGAGAGTTCTGGAGGCTGCGCTGGAGTATTCGAGGAGTAGAGCTCATAATTTTATTGCACCGGAGCACATTGTCATCGGTTTATTGACCGTTGATGATGGGAGTGCTGGTCAGGTCCTTAAAAGACTGGGGGTAAATGTAAACCAGTTGTTAGCTGAGGCAGCCTCCAGACTTCAAATAGAGCTTGCCAAAGATGGTAGAGAACCAACTGGGGGATCTCAAAAGACGTTTTCTAAAAAGTCAACTGCATCGTCTGAGAAAACCAAAGAAAAAAGTGCTTTGGAGCGGTTCTGTGTGGATCTCACTGCTCGTGCTAGTGAGGGACGCATTGATCCTGTTATTGGCCGGGATACTGAAGTTCAGAGAATTATTCAGATACTTTGTCGCAGAACTAAAAATAATCCCATTCTTCTCGGTCAAAGTGGGGTTGGAAAGACAGCCATTGTTGAAGGTCTGGCAACTAGTATTGCACAGGCAGATGTCCCTGTTTATCTGTTGACAAAACGCGTAATGTCTTTGGACGTGGCACTGTTAATGGCTGGTGCAAAGGAGAGGGGAGAGTTGGAGGCGCGTGTTACCTCCTTAATAAGTGATGTACAAAAATCAGGTGAGAATGTTATTCTGTTTATTGATGAAGTTCATACTCTTATTGAGTCCGGCACAGTTGGACGAGGAAATAAGGGGTCTGGTCTTGACATTGCTAATATAATGAAACCGGCACTTGGGAGGGGTAAATTACAGTGTATTGCATCAACTACTACCGATGAATACAGGATGCATCTTGAAAAGGATAAAGCATTTGGACGAAGATTCCAACCTGTCTGGATCAATGAACCAAGCCAGGACGATGCAGTTAGGATTCTGTTTGGTTTGCGTGAGAAATATGAGGCCCATCACAACTGCATATATGCACCAGAAGCCATTAGTGCTGCTGTGTACCTGTCAGCAAGATATATTCCTGATAGATATCTTCCTGATAAAGCTATTGATCTCCTTGATGAGGCGGGAAGTAGAGCTCGTATGGAAGCCTTTAAGAAGAAAAAAGAAGAGCGGGTTGGCATACTTTCAAAGTCACCTGATGATTATTGGCAAGAAATTCGTACAGTTCAGGCAATGCATGAAGTGGTCCTATCGAGTGAACTGAAAAATGGAGCTGCTTCTGTGGATGATACCAGAGAACATATTCTAGAGTCCATTTCATCTTCCACAGTAGATGATGAACCTACTGTGGTGGGACCAAATGATATAGCAGCAGTTGCCTCACTATGGTCAGGAGTCCCTCTTCAGCAGCTCACTGCTGATGACCGACTGATTTTGGTGGGTCTTGATGAGAAGCTCAGAAGACGGGTTGTTGGTCAAGATGAGGCTGTTGCAGCCATTTCTCGAGCTGTTAGGAGGTCCCGGGTTGGATTGAAGGATCCAAGTAGACCCATGGCAACAATGCTCTTTTGCGGTCCTACTGGAGTTGGCAAAACTGAACTGACAAAAGCTTTGTCCGCATGTTATTTTGGATCGGAGGAAGCTATGGTACGACTGGACATGAGTGAATATATGGAGCGGCACTCTGTCAGCAAATTAATAGGGTCACCTCCAGGCTATGTTGGCTTTGGAGAGGGAGGCACTCTAACAGAAGCTATCAGAAGACGACCTTTTACAGTAGTTGTGCTTGATGAAATCGAGAAGGCCCATCCAGATATATTCAACATCCTTCTCCAAATCTTTGAAGATGGCCACCTTACTGATTCTCAGGGACGAAGAGTATCGTTTAAGAATGCTTTGGTGGTGATGACATCTAATGTGGGTTCCACTATCATTGCAAAGGGTCGAAAAAGCTCCATTGGTTTTGTGCTTACAGACGATGAGTCAAGTACATATGCCGGGATAAAAGCAACAGTAATGGAAGAACTCAAGTCATATTTTCGTCCAGAGTTGCTGAACAGGATAGACGAAGTAGTTGTATTCCATCCCCTTGAAAAGTCTCAGATGCTGGAGATTGTAAATATAATGCTACAAGAAGTGAAGCAGAGGCTAATATCTCTGGGAATTGGACTAGAGGTGTCTGAATCAGTCAAGAACCTCATATGCAAAGAAGGCTATGATCGGATCTATGGTGCTCGCCCTCTTAGACGAGCAATTACATTAATAATTGAAGACCCATTGAGCGAAGCCCTCCTTGCCGGAGTTTACCAGCCTGGTGACACTGCCGTCATTGATTTAGATGCTTCTGGGAACCCTTCTGTAAGTAATGGATCAGGTCAGAGTACTATCCCTTTCTCTAAAACCAATATTCAGCATCCATCTTGTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009941 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0031967 GO:0031975 GO:0033554 GO:0034214 GO:0034605 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0047484 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050896 GO:0051259 GO:0051716 GO:0065003 GO:0065007 GO:0071840 GO:0080134 GO:1901000 GO:1901002 GO:1902584 GO:2000070

KEGG Pathways

Metabolic & Signaling

ko01100 map01100

Pfam Domains

Protein Families

AAA AAA_2 ClpB_D2-small Clp_N

Protein Analysis

964

Amino Acids

105.87

Weight (kDa)

8.77

Isoelectric Point (pI)

52.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Clp_N	PF02861	191 - 267	2.7e-11	Clp repeat (R) N-terminal domain
AAA_16	PF13191	308 - 360	8.9e-06	AAA ATPase domain
NBD_SMAX1	PF23569	314 - 417	2.7e-06	SMAX1 nucleotide binding domain
AAA	PF00004	331 - 448	1.3e-08	ATPase family associated with various cellular activities (AAA)
AAA_lid_9	PF17871	475 - 551	1.7e-26	AAA lid domain
AAA_2	PF07724	671 - 846	3e-63	AAA domain (Cdc48 subfamily)
AAA_5	PF07728	676 - 796	7.8e-11	AAA domain (dynein-related subfamily)
ClpB_D2-small	PF10431	852 - 931	2.9e-23	C-terminal, D2-small domain, of ClpB protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0013822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51070
fragaria_vesca	FvH4_5g10020
malus_domestica	MD06G1128400.v1.1
prunus_persica	Prupe.5G138200_v2.0.a1
pyrus_communis	pycom06g11860
rosa_chinensis	RchiOBHm_Chr7g0188241
rosa_laevigata	RLG00000004715
rosa_multiflora	Rmu_co8357845.1_g000001 Rmu_co8388145.1_g000001 Rmu_sc0008750.1_g000013
rosa_roxburghii	Rroxscaffold_3G00266580
rosa_rugosa	Rorug06G0489400
rosa_samantha	Rh7AG093700 Rh7BG095100 Rh7CG095500 Rh7DG095700
rosa_wichuraiana	Rw7G008070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2789
AccBSI	CCGCTC	5 cut(s)	221, 286, 871, 1636, 2143
AccI	GTMKAC	1 cut(s)	2011
AccII	CGCG	7 cut(s)	300, 302, 433, 435, 477, 1092, 1156
AccIII	TCCGGA	1 cut(s)	483
AcoI	YGGCCR	3 cut(s)	235, 928, 2314
AcsI	RAATTY	1 cut(s)	1680
AcuI	CTGAAG	2 cut(s)	960, 1853
AfaI	GTAC	6 cut(s)	1182, 1523, 1687, 2115, 2455, 2848
AfiI	CCNNNNNNNGG	8 cut(s)	230, 355, 466, 797, 926, 1307, 1585, 1851
AflIII	ACRYGT	2 cut(s)	67, 1090
AgsI	TTSAA	9 cut(s)	761, 1034, 1370, 1653, 1999, 2287, 2309, 2558, 2735
AhdI	GACNNNNNGTC	1 cut(s)	2446
AhlI	ACTAGT	1 cut(s)	1046
AjiI	CACGTC	1 cut(s)	1108
AjnI	CCWGG	4 cut(s)	459, 1425, 2176, 2776
AjuI	GAANNNNNNNTTGG	2 cut(s)	1623, 1655
Alw21I	GWGCWC	4 cut(s)	631, 654, 1603, 2701
Alw26I	GTCTC	2 cut(s)	274, 2568
AlwNI	CAGNNNCTG	1 cut(s)	2572
Ama87I	CYCGRG	3 cut(s)	443, 1968, 1986
Aor13HI	TCCGGA	1 cut(s)	483
AoxI	GGCC	7 cut(s)	235, 346, 468, 928, 1473, 2268, 2314
ApoI	RAATTY	1 cut(s)	1680
ArsI	GACNNNNNNTTYG	8 cut(s)	502, 508, 534, 540, 2059, 2063, 2091, 2095
AseI	ATTAAT	2 cut(s)	2162, 2726
Asp700I	GAANNNNTTC	1 cut(s)	1767
AspLEI	GCGC	6 cut(s)	300, 302, 435, 479, 607, 1156
AspS9I	GGNCC	9 cut(s)	346, 469, 700, 1474, 1711, 1820, 1983, 2039, 2269
AsuC2I	CCSGG	5 cut(s)	350, 932, 1987, 1988, 2464
AsuHPI	GGTGA	5 cut(s)	1205, 1650, 2163, 2380, 2792
AvaI	CYCGRG	3 cut(s)	443, 1968, 1986
AvaII	GGWCC	5 cut(s)	700, 1711, 1820, 1983, 2039
BaeI	ACNNNNGTAYC	2 cut(s)	927, 960
BalI	TGGCCA	1 cut(s)	2316
BamHI	GGATCC	1 cut(s)	2002
BanII	GRGCYC	3 cut(s)	554, 631, 1603
BarI	GAAGNNNNNNTAC	2 cut(s)	2097, 2129
BauI	CACGAG	1 cut(s)	894
BbsI	GAAGAC	4 cut(s)	271, 1933, 2233, 2742
Bbv12I	GWGCWC	4 cut(s)	631, 654, 1603, 2701
BbvCI	CCTCAGC	1 cut(s)	741
BccI	CCATC	8 cut(s)	423, 677, 773, 1485, 2280, 2306, 2556, 2890
BceAI	ACGGC	6 cut(s)	131, 247, 260, 296, 464, 2774
BcgI	CGANNNNNNTGC	4 cut(s)	392, 426, 1664, 1698
BciT130I	CCWGG	4 cut(s)	461, 1427, 2178, 2778
BciVI	GTATCC	1 cut(s)	928
BcnI	CCSGG	5 cut(s)	350, 932, 1987, 1988, 2464
BcoDI	GTCTC	2 cut(s)	274, 2568
BcuI	ACTAGT	1 cut(s)	1046
BfaI	CTAG	5 cut(s)	558, 900, 1047, 1772, 2636
BfuI	GTATCC	1 cut(s)	928
BmcAI	AGTACT	1 cut(s)	2848
Bme1390I	CCNGG	9 cut(s)	350, 461, 932, 1427, 1987, 1988, 2178, 2464, 2778
Bme18I	GGWCC	5 cut(s)	700, 1711, 1820, 1983, 2039
BmeRI	GACNNNNNGTC	1 cut(s)	2446
BmeT110I	CYCGRG	3 cut(s)	443, 1968, 1986
BmgBI	CACGTC	1 cut(s)	1108
BmgT120I	GGNCC	9 cut(s)	346, 469, 700, 1474, 1711, 1820, 1983, 2039, 2269
BmiI	GGNNCC	5 cut(s)	1821, 1985, 2004, 2389, 2816
BmrFI	CCNGG	9 cut(s)	350, 461, 932, 1427, 1987, 1988, 2178, 2464, 2778
BmrI	ACTGGG	2 cut(s)	722, 804
BmsI	GCATC	9 cut(s)	418, 842, 1343, 1350, 1372, 1423, 2559, 2794, 2887
BmuI	ACTGGG	2 cut(s)	722, 804
BpiI	GAAGAC	4 cut(s)	271, 1933, 2233, 2742
BplI	GAGNNNNNCTC	6 cut(s)	613, 645, 734, 766, 2132, 2164
BpmI	CTGGAG	7 cut(s)	482, 617, 629, 736, 2067, 2160, 2594
Bpu10I	CCTNAGC	1 cut(s)	741
BpuEI	CTTGAG	1 cut(s)	2477
BpuMI	CCSGG	5 cut(s)	350, 932, 1987, 1988, 2464
BsaAI	YACGTR	1 cut(s)	70
BsaBI	GATNNNNATC	1 cut(s)	1551
BsaJI	CCNNGG	4 cut(s)	393, 459, 1986, 2016
BsaWI	WCCGGW	2 cut(s)	483, 646
BsaXI	ACNNNNNCTCC	2 cut(s)	679, 709
Bsc4I	CCNNNNNNNGG	8 cut(s)	230, 355, 466, 797, 926, 1307, 1585, 1851
Bse118I	RCCGGY	1 cut(s)	1300
Bse1I	ACTGG	5 cut(s)	717, 730, 799, 2050, 2124
Bse3DI	GCAATG	3 cut(s)	1281, 1704, 2397
Bse8I	GATNNNNATC	1 cut(s)	1551
BseAI	TCCGGA	1 cut(s)	483
BseBI	CCWGG	4 cut(s)	461, 1427, 2178, 2778
BseDI	CCNNGG	4 cut(s)	393, 459, 1986, 2016
BseGI	GGATG	8 cut(s)	14, 421, 1365, 1756, 2272, 2289, 2548, 2878
BseJI	GATNNNNATC	1 cut(s)	1551
BseLI	CCNNNNNNNGG	8 cut(s)	230, 355, 466, 797, 926, 1307, 1585, 1851
BseMI	GCAATG	3 cut(s)	1281, 1704, 2397
BseMII	CTCAG	6 cut(s)	380, 732, 831, 1936, 2345, 2579
BseNI	ACTGG	5 cut(s)	717, 730, 799, 2050, 2124
BsePI	GCGCGC	1 cut(s)	298
BseRI	GAGGAG	5 cut(s)	10, 256, 410, 413, 634
BseX3I	CGGCCG	1 cut(s)	235
Bsh1236I	CGCG	7 cut(s)	300, 302, 433, 435, 477, 1092, 1156
Bsh1285I	CGRYCG	1 cut(s)	238
BshFI	GGCC	7 cut(s)	237, 348, 470, 930, 1475, 2270, 2316
BsiEI	CGRYCG	1 cut(s)	238
BsiHKAI	GWGCWC	4 cut(s)	631, 654, 1603, 2701
BsiHKCI	CYCGRG	3 cut(s)	443, 1968, 1986
BslFI	GGGAC	8 cut(s)	190, 365, 921, 1052, 1833, 1847, 1969, 2349
BslI	CCNNNNNNNGG	8 cut(s)	230, 355, 466, 797, 926, 1307, 1585, 1851
BsmAI	GTCTC	2 cut(s)	274, 2568
BsmBI	CGTCTC	1 cut(s)	274
BsmFI	GGGAC	8 cut(s)	190, 365, 921, 1052, 1833, 1847, 1969, 2349
BsmI	GAATGC	1 cut(s)	2362
BsnI	GGCC	7 cut(s)	237, 348, 470, 930, 1475, 2270, 2316
BsoBI	CYCGRG	3 cut(s)	443, 1968, 1986
Bsp1286I	GDGCHC	5 cut(s)	554, 631, 654, 1603, 2701
Bsp13I	TCCGGA	1 cut(s)	483
Bsp1407I	TGTACA	1 cut(s)	1180
Bsp19I	CCATGG	1 cut(s)	2016
BspANI	GGCC	7 cut(s)	237, 348, 470, 930, 1475, 2270, 2316
BspCNI	CTCAG	6 cut(s)	379, 733, 832, 1935, 2344, 2578
BspEI	TCCGGA	1 cut(s)	483
BspFNI	CGCG	7 cut(s)	300, 302, 433, 435, 477, 1092, 1156
BspLI	GGNNCC	5 cut(s)	1821, 1985, 2004, 2389, 2816
BspQI	GCTCTTC	1 cut(s)	1626
BsrBI	CCGCTC	5 cut(s)	221, 286, 871, 1636, 2143
BsrDI	GCAATG	3 cut(s)	1281, 1704, 2397
BsrFI	RCCGGY	1 cut(s)	1300
BsrGI	TGTACA	1 cut(s)	1180
BsrI	ACTGG	5 cut(s)	717, 730, 799, 2050, 2124
BssAI	RCCGGY	1 cut(s)	1300
BssECI	CCNNGG	4 cut(s)	393, 459, 1986, 2016
BssHII	GCGCGC	1 cut(s)	298
BssSI	CACGAG	1 cut(s)	894
BssT1I	CCWWGG	1 cut(s)	2016
Bst2BI	CACGAG	1 cut(s)	894
Bst2UI	CCWGG	4 cut(s)	461, 1427, 2178, 2778
Bst4CI	ACNGT	9 cut(s)	676, 1116, 1249, 1326, 1690, 1795, 1813, 2242, 2479
Bst6I	CTCTTC	3 cut(s)	1626, 1872, 2335
BstAPI	GCANNNNNTGC	2 cut(s)	376, 1841
BstAUI	TGTACA	1 cut(s)	1180
BstBAI	YACGTR	1 cut(s)	70
BstC8I	GCNNGC	5 cut(s)	300, 468, 472, 771, 2701
BstDEI	CTNAG	7 cut(s)	366, 741, 840, 1922, 2331, 2565, 2708
BstDSI	CCRYGG	1 cut(s)	2016
BstEII	GGTNACC	1 cut(s)	2169
BstENI	CCTNNNNNAGG	2 cut(s)	464, 1583
BstF5I	GGATG	8 cut(s)	14, 421, 1365, 1756, 2272, 2289, 2548, 2878
BstFNI	CGCG	7 cut(s)	300, 302, 433, 435, 477, 1092, 1156
BstHHI	GCGC	6 cut(s)	300, 302, 435, 479, 607, 1156
BstMAI	GTCTC	2 cut(s)	274, 2568
BstMCI	CGRYCG	1 cut(s)	238
BstNI	CCWGG	4 cut(s)	461, 1427, 2178, 2778
BstNSI	RCATGY	2 cut(s)	8, 2088
BstPI	GGTNACC	1 cut(s)	2169
BstSCI	CCNGG	9 cut(s)	348, 459, 930, 1425, 1985, 1986, 2176, 2462, 2776
BstUI	CGCG	7 cut(s)	300, 302, 433, 435, 477, 1092, 1156
BstV2I	GAAGAC	4 cut(s)	271, 1933, 2233, 2742
BstX2I	RGATCY	5 cut(s)	562, 800, 883, 2002, 2688
BstXI	CCANNNNNNTGG	2 cut(s)	48, 343
BstYI	RGATCY	5 cut(s)	562, 800, 883, 2002, 2688
BstZI	CGGCCG	1 cut(s)	235
BsuI	GTATCC	1 cut(s)	928
BsuRI	GGCC	7 cut(s)	237, 348, 470, 930, 1475, 2270, 2316
BtgI	CCRYGG	1 cut(s)	2016
BtgZI	GCGATG	1 cut(s)	395
BtrI	CACGTC	1 cut(s)	1108
BtsCI	GGATG	8 cut(s)	14, 421, 1365, 1756, 2272, 2289, 2548, 2878
BtsI	GCAGTG	4 cut(s)	111, 888, 1878, 2784
BtsIMutI	CAGTG	6 cut(s)	111, 888, 1112, 1331, 1878, 2784
Cac8I	GCNNGC	5 cut(s)	300, 468, 472, 771, 2701
CaiI	CAGNNNCTG	1 cut(s)	2572
CfoI	GCGC	6 cut(s)	300, 302, 435, 479, 607, 1156
Cfr10I	RCCGGY	1 cut(s)	1300
Cfr13I	GGNCC	9 cut(s)	346, 469, 700, 1474, 1711, 1820, 1983, 2039, 2269
Cfr9I	CCCGGG	1 cut(s)	1986
CseI	GACGC	1 cut(s)	918
Csp6I	GTAC	6 cut(s)	1181, 1522, 1686, 2114, 2454, 2847
CspCI	CAANNNNNGTGG	2 cut(s)	2380, 2415
CviAII	CATG	7 cut(s)	5, 355, 454, 1703, 2017, 2085, 2125
CviQI	GTAC	6 cut(s)	1181, 1522, 1686, 2114, 2454, 2847
DdeI	CTNAG	7 cut(s)	366, 741, 840, 1922, 2331, 2565, 2708
DrdI	GACNNNNNNGTC	1 cut(s)	2789
DriI	GACNNNNNGTC	1 cut(s)	2446
DseDI	GACNNNNNNGTC	1 cut(s)	2789
EaeI	YGGCCR	3 cut(s)	235, 928, 2314
EagI	CGGCCG	1 cut(s)	235
Eam1104I	CTCTTC	3 cut(s)	1626, 1872, 2335
Eam1105I	GACNNNNNGTC	1 cut(s)	2446
EarI	CTCTTC	3 cut(s)	1626, 1872, 2335
EciI	GGCGGA	1 cut(s)	262
Ecl136II	GAGCTC	2 cut(s)	629, 1601
EclXI	CGGCCG	1 cut(s)	235
Eco130I	CCWWGG	1 cut(s)	2016
Eco24I	GRGCYC	3 cut(s)	554, 631, 1603
Eco32I	GATATC	2 cut(s)	33, 1553
Eco47I	GGWCC	5 cut(s)	700, 1711, 1820, 1983, 2039
Eco52I	CGGCCG	1 cut(s)	235
Eco53kI	GAGCTC	2 cut(s)	629, 1601
Eco57I	CTGAAG	2 cut(s)	960, 1853
Eco88I	CYCGRG	3 cut(s)	443, 1968, 1986
Eco91I	GGTNACC	1 cut(s)	2169
EcoICRI	GAGCTC	2 cut(s)	629, 1601
EcoNI	CCTNNNNNAGG	2 cut(s)	464, 1583
EcoO109I	RGGNCCY	2 cut(s)	700, 1983
EcoO65I	GGTNACC	1 cut(s)	2169
EcoRII	CCWGG	4 cut(s)	459, 1425, 2176, 2776
EcoRV	GATATC	2 cut(s)	33, 1553
EcoT14I	CCWWGG	1 cut(s)	2016
EcoT22I	ATGCAT	3 cut(s)	6, 1365, 1704
EcoT38I	GRGCYC	3 cut(s)	554, 631, 1603
ErhI	CCWWGG	1 cut(s)	2016
Esp3I	CGTCTC	1 cut(s)	274
FaeI	CATG	7 cut(s)	8, 358, 457, 1706, 2020, 2088, 2128
FalI	AAGNNNNNCTT	4 cut(s)	2218, 2250, 2742, 2774
FaqI	GGGAC	8 cut(s)	190, 365, 921, 1052, 1833, 1847, 1969, 2349
FatI	CATG	7 cut(s)	4, 354, 453, 1702, 2016, 2084, 2124
FauI	CCCGC	4 cut(s)	428, 479, 1582, 1629
FauNDI	CATATG	2 cut(s)	2458, 2666
FblI	GTMKAC	1 cut(s)	2011
FokI	GGATG	7 cut(s)	408, 1372, 1763, 2259, 2276, 2535, 2865
FriOI	GRGCYC	3 cut(s)	554, 631, 1603
FspBI	CTAG	5 cut(s)	558, 900, 1047, 1772, 2636
GlaI	GCGC	6 cut(s)	299, 301, 434, 478, 606, 1155
GsuI	CTGGAG	7 cut(s)	482, 617, 629, 736, 2067, 2160, 2594
HaeIII	GGCC	7 cut(s)	237, 348, 470, 930, 1475, 2270, 2316
HgaI	GACGC	1 cut(s)	918
HhaI	GCGC	6 cut(s)	300, 302, 435, 479, 607, 1156
Hin1II	CATG	7 cut(s)	8, 358, 457, 1706, 2020, 2088, 2128
Hin6I	GCGC	6 cut(s)	298, 300, 433, 477, 605, 1154
HinP1I	GCGC	6 cut(s)	298, 300, 433, 477, 605, 1154
HincII	GTYRAC	2 cut(s)	828, 1083
HindII	GTYRAC	2 cut(s)	828, 1083
HindIII	AAGCTT	1 cut(s)	2073
HinfI	GANTC	8 cut(s)	1238, 1395, 1444, 1775, 1860, 2327, 2447, 2648
HphI	GGTGA	5 cut(s)	1205, 1650, 2163, 2380, 2792
Hpy166II	GTNNAC	9 cut(s)	291, 363, 727, 828, 1083, 1522, 1724, 2012, 2770
Hpy8I	GTNNAC	9 cut(s)	291, 363, 727, 828, 1083, 1522, 1724, 2012, 2770
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	7 cut(s)	208, 1028, 1993, 2260, 2303, 2669, 2829
HpyCH4III	ACNGT	9 cut(s)	676, 1116, 1249, 1326, 1690, 1795, 1813, 2242, 2479
HpyCH4IV	ACGT	3 cut(s)	69, 812, 1107
HpyF3I	CTNAG	7 cut(s)	366, 741, 840, 1922, 2331, 2565, 2708
HpySE526I	ACGT	3 cut(s)	69, 812, 1107
Hsp92II	CATG	7 cut(s)	8, 358, 457, 1706, 2020, 2088, 2128
HspAI	GCGC	6 cut(s)	298, 300, 433, 477, 605, 1154
Kpn2I	TCCGGA	1 cut(s)	483
LguI	GCTCTTC	1 cut(s)	1626
LweI	GCATC	9 cut(s)	418, 842, 1343, 1350, 1372, 1423, 2559, 2794, 2887
MaeI	CTAG	5 cut(s)	558, 900, 1047, 1772, 2636
MaeII	ACGT	3 cut(s)	69, 812, 1107
MaeIII	GTNAC	6 cut(s)	100, 122, 1159, 1656, 2169, 2780
MbiI	CCGCTC	5 cut(s)	221, 286, 871, 1636, 2143
MflI	RGATCY	5 cut(s)	562, 800, 883, 2002, 2688
MhlI	GDGCHC	5 cut(s)	554, 631, 654, 1603, 2701
MlsI	TGGCCA	1 cut(s)	2316
MluI	ACGCGT	1 cut(s)	1090
MluNI	TGGCCA	1 cut(s)	2316
MlyI	GAGTC	4 cut(s)	1247, 1784, 1869, 2456
MmeI	TCCRAC	5 cut(s)	994, 1128, 1231, 1423, 1972
Mox20I	TGGCCA	1 cut(s)	2316
Mph1103I	ATGCAT	3 cut(s)	6, 1365, 1704
MroI	TCCGGA	1 cut(s)	483
MroXI	GAANNNNTTC	1 cut(s)	1767
MscI	TGGCCA	1 cut(s)	2316
MseI	TTAA	8 cut(s)	705, 1118, 1169, 1617, 2162, 2352, 2726, 2893
MslI	CAYNNNNRTG	1 cut(s)	46
Msp20I	TGGCCA	1 cut(s)	2316
MspR9I	CCNGG	9 cut(s)	350, 461, 932, 1427, 1987, 1988, 2178, 2464, 2778
Mva1269I	GAATGC	1 cut(s)	2362
MvaI	CCWGG	4 cut(s)	461, 1427, 2178, 2778
MvnI	CGCG	7 cut(s)	300, 302, 433, 435, 477, 1092, 1156
NciI	CCSGG	5 cut(s)	350, 932, 1987, 1988, 2464
NcoI	CCATGG	1 cut(s)	2016
NdeI	CATATG	2 cut(s)	2458, 2666
NlaIII	CATG	7 cut(s)	8, 358, 457, 1706, 2020, 2088, 2128
NlaIV	GGNNCC	5 cut(s)	1821, 1985, 2004, 2389, 2816
NmeAIII	GCCGAG	1 cut(s)	418
NmuCI	GTSAC	3 cut(s)	1656, 2169, 2780
NsiI	ATGCAT	3 cut(s)	6, 1365, 1704
NspI	RCATGY	2 cut(s)	8, 2088
PaeR7I	CTCGAG	1 cut(s)	1968
PauI	GCGCGC	1 cut(s)	298
PciSI	GCTCTTC	1 cut(s)	1626
PcsI	WCGNNNNNNNCGW	2 cut(s)	273, 299
PctI	GAATGC	1 cut(s)	2362
PdmI	GAANNNNTTC	1 cut(s)	1767
PfeI	GAWTC	4 cut(s)	1395, 1444, 2327, 2648
PleI	GAGTC	4 cut(s)	1246, 1783, 1868, 2455
PpsI	GAGTC	4 cut(s)	1246, 1783, 1868, 2455
Ppu21I	YACGTR	1 cut(s)	70
PpuMI	RGGWCCY	2 cut(s)	700, 1983
PshBI	ATTAAT	2 cut(s)	2162, 2726
Psp124BI	GAGCTC	2 cut(s)	631, 1603
Psp5II	RGGWCCY	2 cut(s)	700, 1983
Psp6I	CCWGG	4 cut(s)	459, 1425, 2176, 2776
PspEI	GGTNACC	1 cut(s)	2169
PspGI	CCWGG	4 cut(s)	459, 1425, 2176, 2776
PspN4I	GGNNCC	5 cut(s)	1821, 1985, 2004, 2389, 2816
PspPI	GGNCC	9 cut(s)	346, 469, 700, 1474, 1711, 1820, 1983, 2039, 2269
PspPPI	RGGWCCY	2 cut(s)	700, 1983
PstNI	CAGNNNCTG	1 cut(s)	2572
PsuI	RGATCY	5 cut(s)	562, 800, 883, 2002, 2688
PteI	GCGCGC	1 cut(s)	298
RsaI	GTAC	6 cut(s)	1182, 1523, 1687, 2115, 2455, 2848
RsaNI	GTAC	6 cut(s)	1181, 1522, 1686, 2114, 2454, 2847
RseI	CAYNNNNRTG	1 cut(s)	46
SacI	GAGCTC	2 cut(s)	631, 1603
SapI	GCTCTTC	1 cut(s)	1626
SaqAI	TTAA	8 cut(s)	705, 1118, 1169, 1617, 2162, 2352, 2726, 2893
Sau96I	GGNCC	9 cut(s)	346, 469, 700, 1474, 1711, 1820, 1983, 2039, 2269
ScaI	AGTACT	1 cut(s)	2848
SchI	GAGTC	4 cut(s)	1247, 1784, 1869, 2456
ScrFI	CCNGG	9 cut(s)	350, 461, 932, 1427, 1987, 1988, 2178, 2464, 2778
SduI	GDGCHC	5 cut(s)	554, 631, 654, 1603, 2701
SfaNI	GCATC	9 cut(s)	418, 842, 1343, 1350, 1372, 1423, 2559, 2794, 2887
Sfr274I	CTCGAG	1 cut(s)	1968
SinI	GGWCC	5 cut(s)	700, 1711, 1820, 1983, 2039
SlaI	CTCGAG	1 cut(s)	1968
SmaI	CCCGGG	1 cut(s)	1988
SmiMI	CAYNNNNRTG	1 cut(s)	46
SmlI	CTYRAG	2 cut(s)	1968, 2492
SmoI	CTYRAG	2 cut(s)	1968, 2492
SpeI	ACTAGT	1 cut(s)	1046
SspI	AATATT	1 cut(s)	2872
SspMI	CTAG	5 cut(s)	558, 900, 1047, 1772, 2636
SstI	GAGCTC	2 cut(s)	631, 1603
StyD4I	CCNGG	9 cut(s)	348, 459, 930, 1425, 1985, 1986, 2176, 2462, 2776
StyI	CCWWGG	1 cut(s)	2016
TaaI	ACNGT	9 cut(s)	676, 1116, 1249, 1326, 1690, 1795, 1813, 2242, 2479
TaiI	ACGT	3 cut(s)	72, 815, 1110
TaqI	TCGA	8 cut(s)	254, 282, 575, 617, 1718, 1969, 2262, 2410
TaqII	GACCGA	2 cut(s)	989, 1905
TatI	WGTACW	3 cut(s)	1180, 2453, 2846
TauI	GCSGC	5 cut(s)	221, 237, 477, 499, 2146
TfiI	GAWTC	4 cut(s)	1395, 1444, 2327, 2648
Tru1I	TTAA	8 cut(s)	705, 1118, 1169, 1617, 2162, 2352, 2726, 2893
Tru9I	TTAA	8 cut(s)	705, 1118, 1169, 1617, 2162, 2352, 2726, 2893
TscAI	CASTG	6 cut(s)	118, 895, 1119, 1331, 1885, 2791
TseFI	GTSAC	3 cut(s)	1656, 2169, 2780
Tsp45I	GTSAC	3 cut(s)	1656, 2169, 2780
TspGWI	ACGGA	3 cut(s)	13, 88, 308
TspMI	CCCGGG	1 cut(s)	1986
TspRI	CASTG	6 cut(s)	118, 895, 1119, 1331, 1885, 2791
VpaK11BI	GGWCC	5 cut(s)	700, 1711, 1820, 1983, 2039
VspI	ATTAAT	2 cut(s)	2162, 2726
XagI	CCTNNNNNAGG	2 cut(s)	464, 1583
XapI	RAATTY	1 cut(s)	1680
XbaI	TCTAGA	1 cut(s)	1771
XceI	RCATGY	2 cut(s)	8, 2088
XhoI	CTCGAG	1 cut(s)	1968
XmaI	CCCGGG	1 cut(s)	1986
XmiI	GTMKAC	1 cut(s)	2011
XmnI	GAANNNNTTC	1 cut(s)	1767
XspI	CTAG	5 cut(s)	558, 900, 1047, 1772, 2636
ZrmI	AGTACT	1 cut(s)	2848
Zsp2I	ATGCAT	3 cut(s)	6, 1365, 1704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.