WD repeat and HMG-box DNA-binding protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G42660 |
| fragaria_vesca | FvH4_5g13280 FvH4_5g13280 FvH4_5g13280 FvH4_5g13280 FvH4_5g13280 |
| malus_domestica | MD06G1206600.v1.1 MD14G1217300.v1.1 |
| prunus_persica | Prupe.5G211000_v2.0.a1 Prupe.5G211000_v2.0.a1 Prupe.5G211000_v2.0.a1 Prupe.5G211000_v2.0.a1 Prupe.5G211000_v2.0.a1 |
| pyrus_communis | pycom06g18450 pycom14g18000 |
| rosa_chinensis | RchiOBHm_Chr7g0183891 |
| rosa_laevigata | RLG00000005014 |
| rosa_multiflora | Rmu_co8106328.1_g000001 Rmu_co8463975.1_g000001 Rmu_sc0004712.1_g000034 Rmu_sc0007533.1_g000004 |
| rosa_roxburghii | Rroxscaffold_3G00270110 |
| rosa_rugosa | Rorug06G0461200 |
| rosa_samantha | Rh1DG157600 Rh7AG062100 Rh7BG062300 Rh7CG063700 Rh7DG062100 |
| rosa_wichuraiana | Rw7G005130 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 4 cut(s) | 239, 1270, 2071, 2818 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 260 |
| AatII | GACGTC | 1 cut(s) | 1849 |
| Acc36I | ACCTGC | 5 cut(s) | 239, 778, 1270, 2071, 2818 |
| AccB1I | GGYRCC | 1 cut(s) | 1298 |
| AccII | CGCG | 2 cut(s) | 192, 330 |
| AciI | CCGC | 8 cut(s) | 58, 120, 190, 366, 1660, 2078, 2108, 2126 |
| AclWI | GGATC | 2 cut(s) | 454, 464 |
| AcoI | YGGCCR | 3 cut(s) | 55, 363, 1541 |
| AcuI | CTGAAG | 4 cut(s) | 38, 981, 1963, 2432 |
| AcyI | GRCGYC | 2 cut(s) | 1299, 1846 |
| AdeI | CACNNNGTG | 1 cut(s) | 106 |
| AfaI | GTAC | 7 cut(s) | 606, 671, 904, 1528, 1621, 1809, 2196 |
| AfeI | AGCGCT | 1 cut(s) | 1222 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 561, 578, 1508, 1841, 2197, 2425 |
| AflII | CTTAAG | 1 cut(s) | 557 |
| AflIII | ACRYGT | 1 cut(s) | 1690 |
| AjiI | CACGTC | 1 cut(s) | 103 |
| AjnI | CCWGG | 7 cut(s) | 280, 643, 1294, 1315, 1861, 2367, 2584 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2649, 2681 |
| Alw21I | GWGCWC | 1 cut(s) | 1935 |
| Alw26I | GTCTC | 6 cut(s) | 672, 957, 1099, 1681, 2763, 2799 |
| AlwI | GGATC | 2 cut(s) | 454, 464 |
| Aor51HI | AGCGCT | 1 cut(s) | 1222 |
| AoxI | GGCC | 9 cut(s) | 30, 39, 55, 111, 363, 1284, 1541, 2063, 2904 |
| ApeKI | GCWGC | 9 cut(s) | 48, 319, 368, 855, 1248, 1634, 2276, 2316, 2696 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1169, 1201 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 966, 1773 |
| AspLEI | GCGC | 3 cut(s) | 332, 1223, 1301 |
| AspS9I | GGNCC | 7 cut(s) | 7, 31, 85, 246, 1421, 1709, 2904 |
| AsuNHI | GCTAGC | 1 cut(s) | 2128 |
| AvaII | GGWCC | 5 cut(s) | 7, 85, 246, 1421, 1709 |
| BanI | GGYRCC | 1 cut(s) | 1298 |
| BauI | CACGAG | 1 cut(s) | 43 |
| BbsI | GAAGAC | 2 cut(s) | 258, 1766 |
| Bbv12I | GWGCWC | 1 cut(s) | 1935 |
| BbvI | GCAGC | 9 cut(s) | 60, 306, 355, 842, 1260, 1646, 2288, 2303, 2683 |
| BccI | CCATC | 8 cut(s) | 146, 404, 602, 617, 1441, 1667, 1700, 2824 |
| BceAI | ACGGC | 4 cut(s) | 70, 126, 211, 1188 |
| BciT130I | CCWGG | 7 cut(s) | 282, 645, 1296, 1317, 1863, 2369, 2586 |
| BclI | TGATCA | 2 cut(s) | 2824, 2889 |
| BcoDI | GTCTC | 6 cut(s) | 672, 957, 1099, 1681, 2763, 2799 |
| BfaI | CTAG | 5 cut(s) | 209, 1095, 1986, 2129, 2144 |
| BfoI | RGCGCY | 2 cut(s) | 1224, 1302 |
| BfrI | CTTAAG | 1 cut(s) | 557 |
| BfuAI | ACCTGC | 5 cut(s) | 239, 778, 1270, 2071, 2818 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 38 |
| BlpI | GCTNAGC | 2 cut(s) | 460, 1034 |
| BmcAI | AGTACT | 2 cut(s) | 1528, 1809 |
| Bme1390I | CCNGG | 7 cut(s) | 282, 645, 1296, 1317, 1863, 2369, 2586 |
| Bme18I | GGWCC | 5 cut(s) | 7, 85, 246, 1421, 1709 |
| BmgBI | CACGTC | 1 cut(s) | 103 |
| BmgT120I | GGNCC | 7 cut(s) | 7, 31, 85, 246, 1421, 1709, 2904 |
| BmiI | GGNNCC | 7 cut(s) | 86, 247, 541, 1300, 1829, 1970, 2625 |
| BmrFI | CCNGG | 7 cut(s) | 282, 645, 1296, 1317, 1863, 2369, 2586 |
| BmrI | ACTGGG | 2 cut(s) | 516, 532 |
| BmsI | GCATC | 7 cut(s) | 1733, 1782, 2141, 2143, 2318, 2528, 2873 |
| BmtI | GCTAGC | 1 cut(s) | 2132 |
| BmuI | ACTGGG | 2 cut(s) | 516, 532 |
| BpiI | GAAGAC | 2 cut(s) | 258, 1766 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1819, 1851 |
| BpmI | CTGGAG | 4 cut(s) | 145, 164, 634, 2471 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2661 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 460, 1034 |
| BpuEI | CTTGAG | 2 cut(s) | 1183, 2265 |
| BsaBI | GATNNNNATC | 1 cut(s) | 807 |
| BsaHI | GRCGYC | 2 cut(s) | 1299, 1846 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1367, 1397, 2444, 2474 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 561, 578, 1508, 1841, 2197, 2425 |
| Bse1I | ACTGG | 7 cut(s) | 162, 460, 511, 527, 891, 2096, 2454 |
| Bse3DI | GCAATG | 7 cut(s) | 545, 762, 1000, 2326, 2521, 2538, 2706 |
| Bse8I | GATNNNNATC | 1 cut(s) | 807 |
| BseBI | CCWGG | 7 cut(s) | 282, 645, 1296, 1317, 1863, 2369, 2586 |
| BseGI | GGATG | 6 cut(s) | 138, 808, 1744, 2132, 2309, 2519 |
| BseJI | GATNNNNATC | 1 cut(s) | 807 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 561, 578, 1508, 1841, 2197, 2425 |
| BseMI | GCAATG | 7 cut(s) | 545, 762, 1000, 2326, 2521, 2538, 2706 |
| BseMII | CTCAG | 7 cut(s) | 229, 622, 678, 695, 1794, 1948, 2810 |
| BseNI | ACTGG | 7 cut(s) | 162, 460, 511, 527, 891, 2096, 2454 |
| BseRI | GAGGAG | 4 cut(s) | 106, 167, 1034, 1043 |
| BseX3I | CGGCCG | 1 cut(s) | 55 |
| BseXI | GCAGC | 9 cut(s) | 60, 306, 355, 842, 1260, 1646, 2288, 2303, 2683 |
| BseYI | CCCAGC | 2 cut(s) | 1554, 2546 |
| Bsh1236I | CGCG | 2 cut(s) | 192, 330 |
| Bsh1285I | CGRYCG | 3 cut(s) | 14, 58, 589 |
| BshFI | GGCC | 9 cut(s) | 32, 41, 57, 113, 365, 1286, 1543, 2065, 2906 |
| BshNI | GGYRCC | 1 cut(s) | 1298 |
| BsiEI | CGRYCG | 3 cut(s) | 14, 58, 589 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1935 |
| BslFI | GGGAC | 4 cut(s) | 98, 367, 523, 1171 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 561, 578, 1508, 1841, 2197, 2425 |
| BsmAI | GTCTC | 6 cut(s) | 672, 957, 1099, 1681, 2763, 2799 |
| BsmBI | CGTCTC | 1 cut(s) | 2799 |
| BsmFI | GGGAC | 4 cut(s) | 98, 367, 523, 1171 |
| BsmI | GAATGC | 1 cut(s) | 2035 |
| BsnI | GGCC | 9 cut(s) | 32, 41, 57, 113, 365, 1286, 1543, 2065, 2906 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1935 |
| Bsp143I | GATC | 9 cut(s) | 11, 446, 469, 1057, 2140, 2526, 2710, 2824, 2889 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 460, 1034 |
| Bsp19I | CCATGG | 2 cut(s) | 1075, 1461 |
| BspACI | CCGC | 8 cut(s) | 58, 120, 190, 366, 1660, 2078, 2108, 2126 |
| BspANI | GGCC | 9 cut(s) | 32, 41, 57, 113, 365, 1286, 1543, 2065, 2906 |
| BspCNI | CTCAG | 7 cut(s) | 228, 621, 679, 696, 1793, 1947, 2809 |
| BspFNI | CGCG | 2 cut(s) | 192, 330 |
| BspHI | TCATGA | 3 cut(s) | 597, 1405, 2877 |
| BspLI | GGNNCC | 7 cut(s) | 86, 247, 541, 1300, 1829, 1970, 2625 |
| BspMI | ACCTGC | 5 cut(s) | 239, 778, 1270, 2071, 2818 |
| BspOI | GCTAGC | 1 cut(s) | 2132 |
| BspPI | GGATC | 2 cut(s) | 454, 464 |
| BspT107I | GGYRCC | 1 cut(s) | 1298 |
| BspTI | CTTAAG | 1 cut(s) | 557 |
| BsrDI | GCAATG | 7 cut(s) | 545, 762, 1000, 2326, 2521, 2538, 2706 |
| BsrI | ACTGG | 7 cut(s) | 162, 460, 511, 527, 891, 2096, 2454 |
| BssMI | GATC | 9 cut(s) | 11, 446, 469, 1057, 2140, 2526, 2710, 2824, 2889 |
| BssNI | GRCGYC | 2 cut(s) | 1299, 1846 |
| BssSI | CACGAG | 1 cut(s) | 43 |
| BssT1I | CCWWGG | 5 cut(s) | 1075, 1461, 1506, 1923, 2484 |
| Bst2BI | CACGAG | 1 cut(s) | 43 |
| Bst2UI | CCWGG | 7 cut(s) | 282, 645, 1296, 1317, 1863, 2369, 2586 |
| Bst4CI | ACNGT | 7 cut(s) | 479, 514, 590, 1151, 1379, 2407, 2619 |
| Bst6I | CTCTTC | 5 cut(s) | 156, 1011, 1097, 1137, 1982 |
| BstACI | GRCGYC | 2 cut(s) | 1299, 1846 |
| BstAFI | CTTAAG | 1 cut(s) | 557 |
| BstC8I | GCNNGC | 6 cut(s) | 93, 1169, 1201, 1746, 2035, 2130 |
| BstDSI | CCRYGG | 2 cut(s) | 1075, 1461 |
| BstEII | GGTNACC | 2 cut(s) | 710, 744 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1839, 2195 |
| BstF5I | GGATG | 6 cut(s) | 138, 808, 1744, 2132, 2309, 2519 |
| BstFNI | CGCG | 2 cut(s) | 192, 330 |
| BstH2I | RGCGCY | 2 cut(s) | 1224, 1302 |
| BstHHI | GCGC | 3 cut(s) | 332, 1223, 1301 |
| BstKTI | GATC | 9 cut(s) | 14, 449, 472, 1060, 2143, 2529, 2713, 2827, 2892 |
| BstMAI | GTCTC | 6 cut(s) | 672, 957, 1099, 1681, 2763, 2799 |
| BstMBI | GATC | 9 cut(s) | 11, 446, 469, 1057, 2140, 2526, 2710, 2824, 2889 |
| BstMCI | CGRYCG | 3 cut(s) | 14, 58, 589 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 38, 54, 57, 119, 1631, 2702 |
| BstNI | CCWGG | 7 cut(s) | 282, 645, 1296, 1317, 1863, 2369, 2586 |
| BstNSI | RCATGY | 3 cut(s) | 1348, 1694, 2188 |
| BstPI | GGTNACC | 2 cut(s) | 710, 744 |
| BstSCI | CCNGG | 7 cut(s) | 280, 643, 1294, 1315, 1861, 2367, 2584 |
| BstUI | CGCG | 2 cut(s) | 192, 330 |
| BstV1I | GCAGC | 9 cut(s) | 60, 306, 355, 842, 1260, 1646, 2288, 2303, 2683 |
| BstV2I | GAAGAC | 2 cut(s) | 258, 1766 |
| BstX2I | RGATCY | 1 cut(s) | 446 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1958 |
| BstYI | RGATCY | 1 cut(s) | 446 |
| BstZI | CGGCCG | 1 cut(s) | 55 |
| BsuRI | GGCC | 9 cut(s) | 32, 41, 57, 113, 365, 1286, 1543, 2065, 2906 |
| BtgI | CCRYGG | 2 cut(s) | 1075, 1461 |
| BtrI | CACGTC | 1 cut(s) | 103 |
| BtsCI | GGATG | 6 cut(s) | 138, 808, 1744, 2132, 2309, 2519 |
| BtsIMutI | CAGTG | 7 cut(s) | 484, 701, 884, 957, 1668, 1987, 2343 |
| BveI | ACCTGC | 5 cut(s) | 239, 778, 1270, 2071, 2818 |
| Cac8I | GCNNGC | 6 cut(s) | 93, 1169, 1201, 1746, 2035, 2130 |
| CciI | TCATGA | 3 cut(s) | 597, 1405, 2877 |
| CfoI | GCGC | 3 cut(s) | 332, 1223, 1301 |
| Cfr13I | GGNCC | 7 cut(s) | 7, 31, 85, 246, 1421, 1709, 2904 |
| Csp6I | GTAC | 7 cut(s) | 605, 670, 903, 1527, 1620, 1808, 2195 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 2230, 2265, 2332, 2367 |
| CviQI | GTAC | 7 cut(s) | 605, 670, 903, 1527, 1620, 1808, 2195 |
| DinI | GGCGCC | 1 cut(s) | 1300 |
| DpnI | GATC | 9 cut(s) | 13, 448, 471, 1059, 2142, 2528, 2712, 2826, 2891 |
| DpnII | GATC | 9 cut(s) | 11, 446, 469, 1057, 2140, 2526, 2710, 2824, 2889 |
| DraIII | CACNNNGTG | 1 cut(s) | 106 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 260 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 260 |
| EaeI | YGGCCR | 3 cut(s) | 55, 363, 1541 |
| EagI | CGGCCG | 1 cut(s) | 55 |
| Eam1104I | CTCTTC | 5 cut(s) | 156, 1011, 1097, 1137, 1982 |
| EarI | CTCTTC | 5 cut(s) | 156, 1011, 1097, 1137, 1982 |
| EciI | GGCGGA | 1 cut(s) | 109 |
| EclXI | CGGCCG | 1 cut(s) | 55 |
| Eco130I | CCWWGG | 5 cut(s) | 1075, 1461, 1506, 1923, 2484 |
| Eco47I | GGWCC | 5 cut(s) | 7, 85, 246, 1421, 1709 |
| Eco47III | AGCGCT | 1 cut(s) | 1222 |
| Eco52I | CGGCCG | 1 cut(s) | 55 |
| Eco57I | CTGAAG | 4 cut(s) | 38, 981, 1963, 2432 |
| Eco91I | GGTNACC | 2 cut(s) | 710, 744 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1839, 2195 |
| EcoO65I | GGTNACC | 2 cut(s) | 710, 744 |
| EcoRII | CCWGG | 7 cut(s) | 280, 643, 1294, 1315, 1861, 2367, 2584 |
| EcoT14I | CCWWGG | 5 cut(s) | 1075, 1461, 1506, 1923, 2484 |
| EcoT22I | ATGCAT | 1 cut(s) | 2521 |
| EgeI | GGCGCC | 1 cut(s) | 1300 |
| EheI | GGCGCC | 1 cut(s) | 1300 |
| ErhI | CCWWGG | 5 cut(s) | 1075, 1461, 1506, 1923, 2484 |
| Esp3I | CGTCTC | 1 cut(s) | 2799 |
| FaqI | GGGAC | 4 cut(s) | 98, 367, 523, 1171 |
| FauI | CCCGC | 1 cut(s) | 2085 |
| FauNDI | CATATG | 1 cut(s) | 1126 |
| FbaI | TGATCA | 2 cut(s) | 2824, 2889 |
| FokI | GGATG | 6 cut(s) | 125, 815, 1751, 2119, 2296, 2506 |
| FspBI | CTAG | 5 cut(s) | 209, 1095, 1986, 2129, 2144 |
| GlaI | GCGC | 3 cut(s) | 331, 1222, 1300 |
| GsaI | CCCAGC | 2 cut(s) | 1558, 2550 |
| GsuI | CTGGAG | 4 cut(s) | 145, 164, 634, 2471 |
| HaeII | RGCGCY | 2 cut(s) | 1224, 1302 |
| HaeIII | GGCC | 9 cut(s) | 32, 41, 57, 113, 365, 1286, 1543, 2065, 2906 |
| HhaI | GCGC | 3 cut(s) | 332, 1223, 1301 |
| Hin1I | GRCGYC | 2 cut(s) | 1299, 1846 |
| Hin6I | GCGC | 3 cut(s) | 330, 1221, 1299 |
| HinP1I | GCGC | 3 cut(s) | 330, 1221, 1299 |
| HindIII | AAGCTT | 6 cut(s) | 392, 2259, 2300, 2330, 2357, 2396 |
| Hpy166II | GTNNAC | 4 cut(s) | 670, 1208, 1868, 2758 |
| Hpy8I | GTNNAC | 4 cut(s) | 670, 1208, 1868, 2758 |
| Hpy99I | CGWCG | 3 cut(s) | 107, 197, 2862 |
| HpyAV | CCTTC | 8 cut(s) | 948, 1297, 1583, 1597, 1892, 2713, 2773, 2836 |
| HpyCH4III | ACNGT | 7 cut(s) | 479, 514, 590, 1151, 1379, 2407, 2619 |
| HpyCH4IV | ACGT | 4 cut(s) | 102, 603, 1846, 2792 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 38, 54, 57, 119, 1631, 2702 |
| HpySE526I | ACGT | 4 cut(s) | 102, 603, 1846, 2792 |
| Hsp92I | GRCGYC | 2 cut(s) | 1299, 1846 |
| HspAI | GCGC | 3 cut(s) | 330, 1221, 1299 |
| KasI | GGCGCC | 1 cut(s) | 1298 |
| Ksp22I | TGATCA | 2 cut(s) | 2824, 2889 |
| Kzo9I | GATC | 9 cut(s) | 11, 446, 469, 1057, 2140, 2526, 2710, 2824, 2889 |
| Lsp1109I | GCAGC | 9 cut(s) | 60, 306, 355, 842, 1260, 1646, 2288, 2303, 2683 |
| LweI | GCATC | 7 cut(s) | 1733, 1782, 2141, 2143, 2318, 2528, 2873 |
| MaeI | CTAG | 5 cut(s) | 209, 1095, 1986, 2129, 2144 |
| MaeII | ACGT | 4 cut(s) | 102, 603, 1846, 2792 |
| MalI | GATC | 9 cut(s) | 13, 448, 471, 1059, 2142, 2528, 2712, 2826, 2891 |
| MboI | GATC | 9 cut(s) | 11, 446, 469, 1057, 2140, 2526, 2710, 2824, 2889 |
| MfeI | CAATTG | 3 cut(s) | 405, 873, 1365 |
| MflI | RGATCY | 1 cut(s) | 446 |
| MhlI | GDGCHC | 1 cut(s) | 1935 |
| Mly113I | GGCGCC | 1 cut(s) | 1299 |
| MlyI | GAGTC | 6 cut(s) | 140, 625, 928, 1193, 1654, 1852 |
| Mph1103I | ATGCAT | 1 cut(s) | 2521 |
| MroXI | GAANNNNTTC | 2 cut(s) | 966, 1773 |
| MspA1I | CMGCKG | 3 cut(s) | 368, 612, 686 |
| MspCI | CTTAAG | 1 cut(s) | 557 |
| MspR9I | CCNGG | 7 cut(s) | 282, 645, 1296, 1317, 1863, 2369, 2586 |
| MunI | CAATTG | 3 cut(s) | 405, 873, 1365 |
| Mva1269I | GAATGC | 1 cut(s) | 2035 |
| MvaI | CCWGG | 7 cut(s) | 282, 645, 1296, 1317, 1863, 2369, 2586 |
| MvnI | CGCG | 2 cut(s) | 192, 330 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 38, 54, 57, 119, 1631, 2702 |
| NarI | GGCGCC | 1 cut(s) | 1299 |
| NcoI | CCATGG | 2 cut(s) | 1075, 1461 |
| NdeI | CATATG | 1 cut(s) | 1126 |
| NdeII | GATC | 9 cut(s) | 11, 446, 469, 1057, 2140, 2526, 2710, 2824, 2889 |
| NheI | GCTAGC | 1 cut(s) | 2128 |
| NlaIV | GGNNCC | 7 cut(s) | 86, 247, 541, 1300, 1829, 1970, 2625 |
| NmeAIII | GCCGAG | 1 cut(s) | 1442 |
| NmuCI | GTSAC | 7 cut(s) | 106, 451, 710, 744, 931, 1717, 1753 |
| NsiI | ATGCAT | 1 cut(s) | 2521 |
| NspI | RCATGY | 3 cut(s) | 1348, 1694, 2188 |
| PagI | TCATGA | 3 cut(s) | 597, 1405, 2877 |
| PaqCI | CACCTGC | 4 cut(s) | 239, 1270, 2071, 2818 |
| PciI | ACATGT | 1 cut(s) | 1690 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 141 |
| PctI | GAATGC | 1 cut(s) | 2035 |
| PdmI | GAANNNNTTC | 2 cut(s) | 966, 1773 |
| PfeI | GAWTC | 5 cut(s) | 312, 500, 926, 1082, 1919 |
| Ple19I | CGATCG | 1 cut(s) | 14 |
| PleI | GAGTC | 6 cut(s) | 140, 624, 928, 1192, 1653, 1852 |
| PluTI | GGCGCC | 1 cut(s) | 1302 |
| PpsI | GAGTC | 6 cut(s) | 140, 624, 928, 1192, 1653, 1852 |
| PscI | ACATGT | 1 cut(s) | 1690 |
| Psp6I | CCWGG | 7 cut(s) | 280, 643, 1294, 1315, 1861, 2367, 2584 |
| PspEI | GGTNACC | 2 cut(s) | 710, 744 |
| PspFI | CCCAGC | 2 cut(s) | 1554, 2546 |
| PspGI | CCWGG | 7 cut(s) | 280, 643, 1294, 1315, 1861, 2367, 2584 |
| PspN4I | GGNNCC | 7 cut(s) | 86, 247, 541, 1300, 1829, 1970, 2625 |
| PspPI | GGNCC | 7 cut(s) | 7, 31, 85, 246, 1421, 1709, 2904 |
| PsuI | RGATCY | 1 cut(s) | 446 |
| PvuI | CGATCG | 1 cut(s) | 14 |
| PvuII | CAGCTG | 2 cut(s) | 612, 686 |
| RsaI | GTAC | 7 cut(s) | 606, 671, 904, 1528, 1621, 1809, 2196 |
| RsaNI | GTAC | 7 cut(s) | 605, 670, 903, 1527, 1620, 1808, 2195 |
| Sau3AI | GATC | 9 cut(s) | 11, 446, 469, 1057, 2140, 2526, 2710, 2824, 2889 |
| Sau96I | GGNCC | 7 cut(s) | 7, 31, 85, 246, 1421, 1709, 2904 |
| ScaI | AGTACT | 2 cut(s) | 1528, 1809 |
| SchI | GAGTC | 6 cut(s) | 140, 625, 928, 1193, 1654, 1852 |
| ScrFI | CCNGG | 7 cut(s) | 282, 645, 1296, 1317, 1863, 2369, 2586 |
| SduI | GDGCHC | 1 cut(s) | 1935 |
| SfaNI | GCATC | 7 cut(s) | 1733, 1782, 2141, 2143, 2318, 2528, 2873 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 38 |
| SfoI | GGCGCC | 1 cut(s) | 1300 |
| SinI | GGWCC | 5 cut(s) | 7, 85, 246, 1421, 1709 |
| SmlI | CTYRAG | 3 cut(s) | 557, 1162, 2280 |
| SmoI | CTYRAG | 3 cut(s) | 557, 1162, 2280 |
| SsiI | CCGC | 8 cut(s) | 58, 120, 190, 366, 1660, 2078, 2108, 2126 |
| SspDI | GGCGCC | 1 cut(s) | 1298 |
| SspI | AATATT | 1 cut(s) | 304 |
| SspMI | CTAG | 5 cut(s) | 209, 1095, 1986, 2129, 2144 |
| StyD4I | CCNGG | 7 cut(s) | 280, 643, 1294, 1315, 1861, 2367, 2584 |
| StyI | CCWWGG | 5 cut(s) | 1075, 1461, 1506, 1923, 2484 |
| TaaI | ACNGT | 7 cut(s) | 479, 514, 590, 1151, 1379, 2407, 2619 |
| TaiI | ACGT | 4 cut(s) | 105, 606, 1849, 2795 |
| TaqI | TCGA | 3 cut(s) | 585, 2525, 2857 |
| TatI | WGTACW | 2 cut(s) | 1526, 1807 |
| TauI | GCSGC | 2 cut(s) | 60, 368 |
| TfiI | GAWTC | 5 cut(s) | 312, 500, 926, 1082, 1919 |
| TscAI | CASTG | 7 cut(s) | 484, 708, 891, 964, 1675, 1987, 2350 |
| TseFI | GTSAC | 7 cut(s) | 106, 451, 710, 744, 931, 1717, 1753 |
| TseI | GCWGC | 9 cut(s) | 48, 319, 368, 855, 1248, 1634, 2276, 2316, 2696 |
| Tsp45I | GTSAC | 7 cut(s) | 106, 451, 710, 744, 931, 1717, 1753 |
| TspGWI | ACGGA | 1 cut(s) | 250 |
| TspRI | CASTG | 7 cut(s) | 484, 708, 891, 964, 1675, 1987, 2350 |
| Vha464I | CTTAAG | 1 cut(s) | 557 |
| VpaK11BI | GGWCC | 5 cut(s) | 7, 85, 246, 1421, 1709 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1839, 2195 |
| XceI | RCATGY | 3 cut(s) | 1348, 1694, 2188 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 775, 1551 |
| XmnI | GAANNNNTTC | 2 cut(s) | 966, 1773 |
| XspI | CTAG | 5 cut(s) | 209, 1095, 1986, 2129, 2144 |
| ZraI | GACGTC | 1 cut(s) | 1847 |
| ZrmI | AGTACT | 2 cut(s) | 1528, 1809 |
| Zsp2I | ATGCAT | 1 cut(s) | 2521 |