Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8106328.1

Orthogroup ID

OG0005318

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 560

Gene Structure 560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8106328.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

atagattttcatgatacaagccgaggtccacgagttccatcaatgacagaccattttggttttacaatggcttcactgaatgagaatggaagtgtttttgcaaatccctgcaagggtgaaaagaacatgagcactctcatgtatcgcccatttagtagctgggcaaacaatagcgagtggtctatgcgattggaaggggaagaagtgaaggttgtggcacttggtacaacttgggtggcagcaattactagtcttaacttgatccgcatcttcaccattggtggtttgcaggtttgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mcl1_mid WD40

Protein Analysis

99

Amino Acids

10.97

Weight (kDa)

6.09

Isoelectric Point (pI)

18.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42660
fragaria_vesca	FvH4_5g13280 FvH4_5g13280 FvH4_5g13280 FvH4_5g13280 FvH4_5g13280
malus_domestica	MD06G1206600.v1.1 MD14G1217300.v1.1
prunus_persica	Prupe.5G211000_v2.0.a1 Prupe.5G211000_v2.0.a1 Prupe.5G211000_v2.0.a1 Prupe.5G211000_v2.0.a1 Prupe.5G211000_v2.0.a1
pyrus_communis	pycom06g18450 pycom14g18000
rosa_chinensis	RchiOBHm_Chr7g0183891
rosa_laevigata	RLG00000005014
rosa_multiflora	Rmu_co8106328.1_g000001 Rmu_co8463975.1_g000001 Rmu_sc0004712.1_g000034 Rmu_sc0007533.1_g000004
rosa_roxburghii	Rroxscaffold_3G00270110
rosa_rugosa	Rorug06G0461200
rosa_samantha	Rh1DG157600 Rh7AG062100 Rh7BG062300 Rh7CG063700 Rh7DG062100
rosa_wichuraiana	Rw7G005130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	280
AciI	CCGC	1 cut(s)	265
AclWI	GGATC	1 cut(s)	256
AfaI	GTAC	1 cut(s)	226
AfiI	CCNNNNNNNGG	1 cut(s)	113
AhlI	ACTAGT	1 cut(s)	248
AluBI	AGCT	1 cut(s)	159
AluI	AGCT	1 cut(s)	159
Alw21I	GWGCWC	1 cut(s)	134
AlwI	GGATC	1 cut(s)	256
ApeKI	GCWGC	1 cut(s)	239
AspS9I	GGNCC	1 cut(s)	26
AsuHPI	GGTGA	2 cut(s)	128, 265
AvaII	GGWCC	1 cut(s)	26
BauI	CACGAG	1 cut(s)	30
Bbv12I	GWGCWC	1 cut(s)	134
BbvI	GCAGC	1 cut(s)	251
BccI	CCATC	1 cut(s)	46
BcuI	ACTAGT	1 cut(s)	248
BfaI	CTAG	1 cut(s)	249
BfuAI	ACCTGC	1 cut(s)	280
BisI	GCNGC	1 cut(s)	240
BlsI	GCNGC	1 cut(s)	241
Bme18I	GGWCC	1 cut(s)	26
BmgT120I	GGNCC	1 cut(s)	26
BmsI	GCATC	1 cut(s)	276
BsaBI	GATNNNNATC	1 cut(s)	266
BsaJI	CCNNGG	1 cut(s)	22
Bsc4I	CCNNNNNNNGG	1 cut(s)	113
Bse8I	GATNNNNATC	1 cut(s)	266
BseDI	CCNNGG	1 cut(s)	22
BseJI	GATNNNNATC	1 cut(s)	266
BseLI	CCNNNNNNNGG	1 cut(s)	113
BseXI	GCAGC	1 cut(s)	251
BseYI	CCCAGC	1 cut(s)	159
BsiHKAI	GWGCWC	1 cut(s)	134
BslI	CCNNNNNNNGG	1 cut(s)	113
Bsp1286I	GDGCHC	1 cut(s)	134
Bsp143I	GATC	1 cut(s)	261
BspACI	CCGC	1 cut(s)	265
BspHI	TCATGA	1 cut(s)	10
BspMI	ACCTGC	1 cut(s)	280
BspPI	GGATC	1 cut(s)	256
BssECI	CCNNGG	1 cut(s)	22
BssMI	GATC	1 cut(s)	261
BssSI	CACGAG	1 cut(s)	30
Bst2BI	CACGAG	1 cut(s)	30
BstKTI	GATC	1 cut(s)	264
BstMBI	GATC	1 cut(s)	261
BstV1I	GCAGC	1 cut(s)	251
BtsIMutI	CAGTG	1 cut(s)	74
BveI	ACCTGC	1 cut(s)	280
CciI	TCATGA	1 cut(s)	10
Cfr13I	GGNCC	1 cut(s)	26
Csp6I	GTAC	1 cut(s)	225
CspCI	CAANNNNNGTGG	2 cut(s)	216, 251
CviAII	CATG	3 cut(s)	11, 127, 139
CviJI	RGCY	3 cut(s)	21, 71, 159
CviKI_1	RGCY	3 cut(s)	21, 71, 159
CviQI	GTAC	1 cut(s)	225
DpnI	GATC	1 cut(s)	263
DpnII	GATC	1 cut(s)	261
Eco47I	GGWCC	1 cut(s)	26
FaeI	CATG	3 cut(s)	14, 130, 142
FaiI	YATR	4 cut(s)	12, 128, 140, 185
FatI	CATG	3 cut(s)	10, 126, 138
Fnu4HI	GCNGC	1 cut(s)	240
Fsp4HI	GCNGC	1 cut(s)	240
FspBI	CTAG	1 cut(s)	249
GluI	GCNGC	1 cut(s)	240
GsaI	CCCAGC	1 cut(s)	163
Hin1II	CATG	3 cut(s)	14, 130, 142
HphI	GGTGA	2 cut(s)	128, 265
Hpy166II	GTNNAC	1 cut(s)	29
Hpy188III	TCNNGA	1 cut(s)	11
Hpy8I	GTNNAC	1 cut(s)	29
HpyAV	CCTTC	2 cut(s)	188, 202
HpyCH4V	TGCA	3 cut(s)	101, 111, 289
Hsp92II	CATG	3 cut(s)	14, 130, 142
Kzo9I	GATC	1 cut(s)	261
LpnPI	CCDG	3 cut(s)	121, 145, 275
Lsp1109I	GCAGC	1 cut(s)	251
LweI	GCATC	1 cut(s)	276
MaeI	CTAG	1 cut(s)	249
MalI	GATC	1 cut(s)	263
MboI	GATC	1 cut(s)	261
MboII	GAAGA	2 cut(s)	212, 262
MhlI	GDGCHC	1 cut(s)	134
MluCI	AATT	1 cut(s)	243
MnlI	CCTC	1 cut(s)	17
MseI	TTAA	1 cut(s)	255
MslI	CAYNNNNRTG	1 cut(s)	137
NdeII	GATC	1 cut(s)	261
NlaIII	CATG	3 cut(s)	14, 130, 142
NmeAIII	GCCGAG	1 cut(s)	47
PagI	TCATGA	1 cut(s)	10
PkrI	GCNGC	1 cut(s)	241
PspFI	CCCAGC	1 cut(s)	159
PspPI	GGNCC	1 cut(s)	26
RsaI	GTAC	1 cut(s)	226
RsaNI	GTAC	1 cut(s)	225
RseI	CAYNNNNRTG	1 cut(s)	137
SaqAI	TTAA	1 cut(s)	255
SatI	GCNGC	1 cut(s)	240
Sau3AI	GATC	1 cut(s)	261
Sau96I	GGNCC	1 cut(s)	26
SduI	GDGCHC	1 cut(s)	134
SetI	ASST	4 cut(s)	28, 161, 213, 294
SfaNI	GCATC	1 cut(s)	276
SinI	GGWCC	1 cut(s)	26
SmiMI	CAYNNNNRTG	1 cut(s)	137
SpeI	ACTAGT	1 cut(s)	248
Sse9I	AATT	1 cut(s)	243
SsiI	CCGC	1 cut(s)	265
SspMI	CTAG	1 cut(s)	249
TasI	AATT	1 cut(s)	243
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TscAI	CASTG	1 cut(s)	81
TseI	GCWGC	1 cut(s)	239
TspRI	CASTG	1 cut(s)	81
VpaK11BI	GGWCC	1 cut(s)	26
XcmI	CCANNNNNNNNNTGG	1 cut(s)	156
XspI	CTAG	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.