Rh1DG157600

Calcium-dependent protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0005318
Physical Location & Seq
Reverse (-)
32704773 .. 32705933
1161 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG157600.1

Sequence Viewer

Length: 339 bp
ATGAAGATAGATTTTCATGATACAAGCCGAGGTTCACAAGTTCCATCAATGACATACCATTTTGGTTTTACAATGGCTTCACTAAATGAGAATGGAAGTGTTTTTGCAAGTCCCTGCAAGGCTGCTGATGTTTGGAGTGTGCAGTGGTGCAAGGGTATATCTTTACATTCTCTTAGCGGGATGCCACCATTTTGGGGGAAGACAAAGTCAAGCATATTTGATGCTGTTAGGACAGTTGATCTGAGGCTCCCATCTGATCCCTGGGATGACATCACTGAATCAGCTAATGATTTGATTCGAGCATTCCTTCTAGAAGGCTCACTGCTTACCAAGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701
KEGG Pathways
Metabolic & Signaling
ko04012 ko04020 ko04024 ko04066 ko04114 ko04217 ko04261 ko04310 ko04360 ko04713 ko04720 ko04722 ko04725 ko04728 ko04740 ko04745 ko04750 ko04911 ko04912 ko04916 ko04921 ko04922 ko04925 ko04934 ko04971 ko05031 ko05152 ko05200 ko05205 ko05214 map04012 map04020 map04024 map04066 map04114 map04217 map04261 map04310 map04360 map04713 map04720 map04722 map04725 map04728 map04740 map04745 map04750 map04911 map04912 map04916 map04921 map04922 map04925 map04934 map04971 map05031 map05152 map05200 map05205 map05214
Pfam Domains
Protein Families
Pkinase

Protein Analysis

112

Amino Acids

12.45

Weight (kDa)

5.81

Isoelectric Point (pI)

28.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mcl1_mid PF12341 2 - 42 5.9e-07 Minichromosome loss protein, Mcl1, middle region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 177
AclWI GGATC 1 cut(s) 251
AfiI CCNNNNNNNGG 1 cut(s) 194
AjnI CCWGG 1 cut(s) 260
AluBI AGCT 1 cut(s) 284
AluI AGCT 1 cut(s) 284
AlwI GGATC 1 cut(s) 251
ApeKI GCWGC 1 cut(s) 122
BbsI GAAGAC 1 cut(s) 206
BbvI GCAGC 1 cut(s) 109
BccI CCATC 2 cut(s) 52, 259
BciT130I CCWGG 1 cut(s) 262
BfaI CTAG 1 cut(s) 311
BisI GCNGC 1 cut(s) 123
BlsI GCNGC 1 cut(s) 124
Bme1390I CCNGG 1 cut(s) 262
BmiI GGNNCC 1 cut(s) 248
BmrFI CCNGG 1 cut(s) 262
BmsI GCATC 2 cut(s) 171, 211
BpiI GAAGAC 1 cut(s) 206
BsaJI CCNNGG 3 cut(s) 28, 260, 261
Bsc4I CCNNNNNNNGG 1 cut(s) 194
BseBI CCWGG 1 cut(s) 262
BseDI CCNNGG 3 cut(s) 28, 260, 261
BseGI GGATG 2 cut(s) 186, 271
BseLI CCNNNNNNNGG 1 cut(s) 194
BseMII CTCAG 1 cut(s) 233
BseXI GCAGC 1 cut(s) 109
BsgI GTGCAG 1 cut(s) 161
BslFI GGGAC 1 cut(s) 96
BslI CCNNNNNNNGG 1 cut(s) 194
BsmFI GGGAC 1 cut(s) 96
BsmI GAATGC 1 cut(s) 302
Bsp143I GATC 2 cut(s) 238, 256
BspACI CCGC 1 cut(s) 177
BspCNI CTCAG 1 cut(s) 234
BspHI TCATGA 1 cut(s) 16
BspLI GGNNCC 1 cut(s) 248
BspPI GGATC 1 cut(s) 251
BssECI CCNNGG 3 cut(s) 28, 260, 261
BssMI GATC 2 cut(s) 238, 256
Bst2UI CCWGG 1 cut(s) 262
Bst4CI ACNGT 1 cut(s) 235
BstDEI CTNAG 2 cut(s) 173, 242
BstF5I GGATG 2 cut(s) 186, 271
BstKTI GATC 2 cut(s) 241, 259
BstMBI GATC 2 cut(s) 238, 256
BstNI CCWGG 1 cut(s) 262
BstSCI CCNGG 1 cut(s) 260
BstV1I GCAGC 1 cut(s) 109
BstV2I GAAGAC 1 cut(s) 206
BstXI CCANNNNNNTGG 1 cut(s) 192
BtsCI GGATG 2 cut(s) 186, 271
BtsI GCAGTG 2 cut(s) 149, 320
BtsIMutI CAGTG 3 cut(s) 149, 273, 320
CciI TCATGA 1 cut(s) 16
CviAII CATG 1 cut(s) 17
CviJI RGCY 6 cut(s) 27, 77, 122, 247, 284, 318
CviKI_1 RGCY 6 cut(s) 27, 77, 122, 247, 284, 318
DdeI CTNAG 2 cut(s) 173, 242
DpnI GATC 2 cut(s) 240, 258
DpnII GATC 2 cut(s) 238, 256
EcoRII CCWGG 1 cut(s) 260
FaeI CATG 1 cut(s) 20
FaiI YATR 4 cut(s) 18, 55, 158, 215
FaqI GGGAC 1 cut(s) 96
FatI CATG 1 cut(s) 16
FauI CCCGC 1 cut(s) 170
Fnu4HI GCNGC 1 cut(s) 123
FokI GGATG 2 cut(s) 193, 278
Fsp4HI GCNGC 1 cut(s) 123
FspBI CTAG 1 cut(s) 311
GluI GCNGC 1 cut(s) 123
Hin1II CATG 1 cut(s) 20
HinfI GANTC 2 cut(s) 278, 295
Hpy166II GTNNAC 1 cut(s) 35
Hpy188I TCNGA 2 cut(s) 243, 256
Hpy188III TCNNGA 2 cut(s) 17, 311
Hpy8I GTNNAC 1 cut(s) 35
HpyAV CCTTC 2 cut(s) 308, 317
HpyCH4III ACNGT 1 cut(s) 235
HpyCH4V TGCA 4 cut(s) 107, 117, 142, 150
HpyF3I CTNAG 2 cut(s) 173, 242
Hsp92II CATG 1 cut(s) 20
Kzo9I GATC 2 cut(s) 238, 256
LmnI GCTCC 1 cut(s) 252
LpnPI CCDG 3 cut(s) 127, 247, 274
Lsp1109I GCAGC 1 cut(s) 109
LweI GCATC 2 cut(s) 171, 211
MaeI CTAG 1 cut(s) 311
MalI GATC 2 cut(s) 240, 258
MboI GATC 2 cut(s) 238, 256
MboII GAAGA 2 cut(s) 16, 211
MnlI CCTC 2 cut(s) 23, 237
MspR9I CCNGG 1 cut(s) 262
Mva1269I GAATGC 1 cut(s) 302
MvaI CCWGG 1 cut(s) 262
NdeII GATC 2 cut(s) 238, 256
NlaIII CATG 1 cut(s) 20
NlaIV GGNNCC 1 cut(s) 248
NmeAIII GCCGAG 1 cut(s) 53
PagI TCATGA 1 cut(s) 16
PasI CCCWGGG 1 cut(s) 261
PctI GAATGC 1 cut(s) 302
PfeI GAWTC 2 cut(s) 278, 295
PflFI GACNNNGTC 1 cut(s) 205
PkrI GCNGC 1 cut(s) 124
Psp6I CCWGG 1 cut(s) 260
PspGI CCWGG 1 cut(s) 260
PspN4I GGNNCC 1 cut(s) 248
PsyI GACNNNGTC 1 cut(s) 205
SatI GCNGC 1 cut(s) 123
Sau3AI GATC 2 cut(s) 238, 256
ScrFI CCNGG 1 cut(s) 262
SetI ASST 2 cut(s) 34, 286
SfaNI GCATC 2 cut(s) 171, 211
SsiI CCGC 1 cut(s) 177
SspMI CTAG 1 cut(s) 311
StyD4I CCNGG 1 cut(s) 260
TaaI ACNGT 1 cut(s) 235
TaqI TCGA 1 cut(s) 298
TfiI GAWTC 2 cut(s) 278, 295
TscAI CASTG 3 cut(s) 149, 280, 327
TseI GCWGC 1 cut(s) 122
TspDTI ATGAA 2 cut(s) 5, 17
TspRI CASTG 3 cut(s) 149, 280, 327
Tth111I GACNNNGTC 1 cut(s) 205
XbaI TCTAGA 1 cut(s) 310
XcmI CCANNNNNNNNNTGG 1 cut(s) 258
XspI CTAG 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.