WD repeat and HMG-box DNA-binding protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G42660 |
| fragaria_vesca | FvH4_5g13280 FvH4_5g13280 FvH4_5g13280 FvH4_5g13280 FvH4_5g13280 |
| malus_domestica | MD06G1206600.v1.1 MD14G1217300.v1.1 |
| prunus_persica | Prupe.5G211000_v2.0.a1 Prupe.5G211000_v2.0.a1 Prupe.5G211000_v2.0.a1 Prupe.5G211000_v2.0.a1 Prupe.5G211000_v2.0.a1 |
| pyrus_communis | pycom06g18450 pycom14g18000 |
| rosa_chinensis | RchiOBHm_Chr7g0183891 |
| rosa_laevigata | RLG00000005014 |
| rosa_multiflora | Rmu_co8106328.1_g000001 Rmu_co8463975.1_g000001 Rmu_sc0004712.1_g000034 Rmu_sc0007533.1_g000004 |
| rosa_roxburghii | Rroxscaffold_3G00270110 |
| rosa_rugosa | Rorug06G0461200 |
| rosa_samantha | Rh1DG157600 Rh7AG062100 Rh7BG062300 Rh7CG063700 Rh7DG062100 |
| rosa_wichuraiana | Rw7G005130 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 3 cut(s) | 410, 1447, 2251 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 431 |
| Acc36I | ACCTGC | 4 cut(s) | 410, 949, 1447, 2251 |
| Acc65I | GGTACC | 1 cut(s) | 2980 |
| AccB1I | GGYRCC | 1 cut(s) | 2980 |
| AccI | GTMKAC | 1 cut(s) | 423 |
| AccII | CGCG | 3 cut(s) | 363, 1378, 1596 |
| AclWI | GGATC | 1 cut(s) | 635 |
| AcsI | RAATTY | 3 cut(s) | 461, 1976, 2293 |
| AcuI | CTGAAG | 3 cut(s) | 1152, 2140, 2615 |
| AcyI | GRCGYC | 1 cut(s) | 369 |
| AdeI | CACNNNGTG | 1 cut(s) | 277 |
| AfaI | GTAC | 7 cut(s) | 239, 502, 777, 1705, 1986, 2255, 2982 |
| AflIII | ACRYGT | 1 cut(s) | 1867 |
| AjiI | CACGTC | 1 cut(s) | 274 |
| AjnI | CCWGG | 6 cut(s) | 451, 504, 814, 1471, 1492, 2038 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1230, 1262, 2832, 2864 |
| Alw26I | GTCTC | 4 cut(s) | 792, 843, 1879, 2945 |
| AlwI | GGATC | 1 cut(s) | 635 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 542 |
| Ama87I | CYCGRG | 1 cut(s) | 748 |
| AoxI | GGCC | 8 cut(s) | 170, 201, 230, 264, 282, 617, 660, 1277 |
| ApoI | RAATTY | 3 cut(s) | 461, 1976, 2293 |
| AseI | ATTAAT | 1 cut(s) | 3053 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1137 |
| Asp718I | GGTACC | 1 cut(s) | 2980 |
| AspLEI | GCGC | 2 cut(s) | 1378, 1506 |
| AspS9I | GGNCC | 7 cut(s) | 170, 202, 230, 256, 617, 1598, 1886 |
| AsuC2I | CCSGG | 1 cut(s) | 523 |
| AsuHPI | GGTGA | 8 cut(s) | 44, 169, 557, 893, 909, 1247, 2275, 2944 |
| AsuNHI | GCTAGC | 1 cut(s) | 2162 |
| AvaI | CYCGRG | 1 cut(s) | 748 |
| AvaII | GGWCC | 3 cut(s) | 256, 1598, 1886 |
| BanI | GGYRCC | 1 cut(s) | 2980 |
| BauI | CACGAG | 2 cut(s) | 214, 2534 |
| BbsI | GAAGAC | 1 cut(s) | 1943 |
| BccI | CCATC | 7 cut(s) | 317, 575, 788, 1313, 1322, 1618, 1877 |
| BceAI | ACGGC | 5 cut(s) | 217, 297, 382, 390, 794 |
| BciT130I | CCWGG | 6 cut(s) | 453, 506, 816, 1473, 1494, 2040 |
| BclI | TGATCA | 3 cut(s) | 3, 883, 1621 |
| BcnI | CCSGG | 1 cut(s) | 523 |
| BcoDI | GTCTC | 4 cut(s) | 792, 843, 1879, 2945 |
| BfaI | CTAG | 4 cut(s) | 1266, 2163, 2309, 2324 |
| BfoI | RGCGCY | 1 cut(s) | 1507 |
| BfuAI | ACCTGC | 4 cut(s) | 410, 949, 1447, 2251 |
| BlpI | GCTNAGC | 1 cut(s) | 1205 |
| BmcAI | AGTACT | 2 cut(s) | 1705, 1986 |
| Bme1390I | CCNGG | 7 cut(s) | 453, 506, 523, 816, 1473, 1494, 2040 |
| Bme18I | GGWCC | 3 cut(s) | 256, 1598, 1886 |
| BmeT110I | CYCGRG | 1 cut(s) | 748 |
| BmgBI | CACGTC | 1 cut(s) | 274 |
| BmgT120I | GGNCC | 7 cut(s) | 170, 202, 230, 256, 617, 1598, 1886 |
| BmiI | GGNNCC | 8 cut(s) | 231, 257, 418, 712, 1531, 2147, 2808, 2982 |
| BmrFI | CCNGG | 7 cut(s) | 453, 506, 523, 816, 1473, 1494, 2040 |
| BmrI | ACTGGG | 2 cut(s) | 687, 703 |
| BmtI | GCTAGC | 1 cut(s) | 2166 |
| BmuI | ACTGGG | 2 cut(s) | 687, 703 |
| BpiI | GAAGAC | 1 cut(s) | 1943 |
| BpmI | CTGGAG | 1 cut(s) | 805 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1205 |
| BpuEI | CTTGAG | 1 cut(s) | 2448 |
| BpuMI | CCSGG | 1 cut(s) | 523 |
| Bsa29I | ATCGAT | 1 cut(s) | 1439 |
| BsaAI | YACGTR | 1 cut(s) | 500 |
| BsaBI | GATNNNNATC | 1 cut(s) | 978 |
| BsaHI | GRCGYC | 1 cut(s) | 369 |
| BsaI | GGTCTC | 1 cut(s) | 2945 |
| BsaJI | CCNNGG | 4 cut(s) | 504, 815, 906, 2100 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1544, 1574 |
| Bse1I | ACTGG | 8 cut(s) | 169, 620, 682, 698, 1062, 2276, 2406, 2880 |
| Bse3DI | GCAATG | 3 cut(s) | 1057, 1171, 2721 |
| Bse8I | GATNNNNATC | 1 cut(s) | 978 |
| BseBI | CCWGG | 6 cut(s) | 453, 506, 816, 1473, 1494, 2040 |
| BseCI | ATCGAT | 1 cut(s) | 1439 |
| BseDI | CCNNGG | 4 cut(s) | 504, 815, 906, 2100 |
| BseGI | GGATG | 9 cut(s) | 309, 979, 1309, 1324, 1921, 2312, 2410, 2722, 2890 |
| BseJI | GATNNNNATC | 1 cut(s) | 978 |
| BseMI | GCAATG | 3 cut(s) | 1057, 1171, 2721 |
| BseMII | CTCAG | 2 cut(s) | 400, 2967 |
| BseNI | ACTGG | 8 cut(s) | 169, 620, 682, 698, 1062, 2276, 2406, 2880 |
| BseRI | GAGGAG | 5 cut(s) | 277, 280, 338, 1205, 3009 |
| Bsh1236I | CGCG | 3 cut(s) | 363, 1378, 1596 |
| BshFI | GGCC | 8 cut(s) | 172, 203, 232, 266, 284, 619, 662, 1279 |
| BshNI | GGYRCC | 1 cut(s) | 2980 |
| BshVI | ATCGAT | 1 cut(s) | 1439 |
| BsiHKCI | CYCGRG | 1 cut(s) | 748 |
| BsiSI | CCGG | 3 cut(s) | 414, 522, 2946 |
| BslFI | GGGAC | 4 cut(s) | 269, 538, 1348, 2533 |
| BsmAI | GTCTC | 4 cut(s) | 792, 843, 1879, 2945 |
| BsmFI | GGGAC | 4 cut(s) | 269, 538, 1348, 2533 |
| BsmI | GAATGC | 2 cut(s) | 1463, 2215 |
| BsnI | GGCC | 8 cut(s) | 172, 203, 232, 266, 284, 619, 662, 1279 |
| Bso31I | GGTCTC | 1 cut(s) | 2945 |
| BsoBI | CYCGRG | 1 cut(s) | 748 |
| Bsp143I | GATC | 9 cut(s) | 3, 640, 757, 883, 979, 1445, 1621, 2320, 2989 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1205 |
| BspANI | GGCC | 8 cut(s) | 172, 203, 232, 266, 284, 619, 662, 1279 |
| BspCNI | CTCAG | 2 cut(s) | 399, 2968 |
| BspDI | ATCGAT | 1 cut(s) | 1439 |
| BspFNI | CGCG | 3 cut(s) | 363, 1378, 1596 |
| BspHI | TCATGA | 2 cut(s) | 1582, 3042 |
| BspLI | GGNNCC | 8 cut(s) | 231, 257, 418, 712, 1531, 2147, 2808, 2982 |
| BspMI | ACCTGC | 4 cut(s) | 410, 949, 1447, 2251 |
| BspOI | GCTAGC | 1 cut(s) | 2166 |
| BspPI | GGATC | 1 cut(s) | 635 |
| BspT107I | GGYRCC | 1 cut(s) | 2980 |
| BspTNI | GGTCTC | 1 cut(s) | 2945 |
| BsrDI | GCAATG | 3 cut(s) | 1057, 1171, 2721 |
| BsrI | ACTGG | 8 cut(s) | 169, 620, 682, 698, 1062, 2276, 2406, 2880 |
| BssECI | CCNNGG | 4 cut(s) | 504, 815, 906, 2100 |
| BssMI | GATC | 9 cut(s) | 3, 640, 757, 883, 979, 1445, 1621, 2320, 2989 |
| BssNI | GRCGYC | 1 cut(s) | 369 |
| BssSI | CACGAG | 2 cut(s) | 214, 2534 |
| BssT1I | CCWWGG | 2 cut(s) | 906, 2100 |
| Bst2BI | CACGAG | 2 cut(s) | 214, 2534 |
| Bst2UI | CCWGG | 6 cut(s) | 453, 506, 816, 1473, 1494, 2040 |
| Bst4CI | ACNGT | 6 cut(s) | 132, 531, 577, 1391, 2025, 2590 |
| Bst6I | CTCTTC | 4 cut(s) | 1182, 1268, 1308, 2159 |
| BstACI | GRCGYC | 1 cut(s) | 369 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 2235, 2266 |
| BstBAI | YACGTR | 1 cut(s) | 500 |
| BstC8I | GCNNGC | 5 cut(s) | 264, 2009, 2108, 2164, 2215 |
| BstDEI | CTNAG | 7 cut(s) | 386, 779, 1155, 1205, 2015, 2111, 2976 |
| BstEII | GGTNACC | 1 cut(s) | 915 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2016 |
| BstF5I | GGATG | 9 cut(s) | 309, 979, 1309, 1324, 1921, 2312, 2410, 2722, 2890 |
| BstFNI | CGCG | 3 cut(s) | 363, 1378, 1596 |
| BstH2I | RGCGCY | 1 cut(s) | 1507 |
| BstHHI | GCGC | 2 cut(s) | 1378, 1506 |
| BstKTI | GATC | 9 cut(s) | 6, 643, 760, 886, 982, 1448, 1624, 2323, 2992 |
| BstMAI | GTCTC | 4 cut(s) | 792, 843, 1879, 2945 |
| BstMBI | GATC | 9 cut(s) | 3, 640, 757, 883, 979, 1445, 1621, 2320, 2989 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 360, 1285, 1512, 2235, 2266, 2921 |
| BstNI | CCWGG | 6 cut(s) | 453, 506, 816, 1473, 1494, 2040 |
| BstNSI | RCATGY | 2 cut(s) | 1525, 1871 |
| BstPI | GGTNACC | 1 cut(s) | 915 |
| BstSCI | CCNGG | 7 cut(s) | 451, 504, 521, 814, 1471, 1492, 2038 |
| BstSNI | TACGTA | 1 cut(s) | 500 |
| BstUI | CGCG | 3 cut(s) | 363, 1378, 1596 |
| BstV2I | GAAGAC | 1 cut(s) | 1943 |
| Bsu15I | ATCGAT | 1 cut(s) | 1439 |
| BsuRI | GGCC | 8 cut(s) | 172, 203, 232, 266, 284, 619, 662, 1279 |
| BsuTUI | ATCGAT | 1 cut(s) | 1439 |
| BtrI | CACGTC | 1 cut(s) | 274 |
| BtsCI | GGATG | 9 cut(s) | 309, 979, 1309, 1324, 1921, 2312, 2410, 2722, 2890 |
| BveI | ACCTGC | 4 cut(s) | 410, 949, 1447, 2251 |
| Cac8I | GCNNGC | 5 cut(s) | 264, 2009, 2108, 2164, 2215 |
| CaiI | CAGNNNCTG | 1 cut(s) | 542 |
| CciI | TCATGA | 2 cut(s) | 1582, 3042 |
| CfoI | GCGC | 2 cut(s) | 1378, 1506 |
| Cfr13I | GGNCC | 7 cut(s) | 170, 202, 230, 256, 617, 1598, 1886 |
| ClaI | ATCGAT | 1 cut(s) | 1439 |
| CseI | GACGC | 3 cut(s) | 358, 1367, 2481 |
| Csp6I | GTAC | 7 cut(s) | 238, 501, 776, 1704, 1985, 2254, 2981 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2413, 2448 |
| CviQI | GTAC | 7 cut(s) | 238, 501, 776, 1704, 1985, 2254, 2981 |
| DdeI | CTNAG | 7 cut(s) | 386, 779, 1155, 1205, 2015, 2111, 2976 |
| DpnI | GATC | 9 cut(s) | 5, 642, 759, 885, 981, 1447, 1623, 2322, 2991 |
| DpnII | GATC | 9 cut(s) | 3, 640, 757, 883, 979, 1445, 1621, 2320, 2989 |
| DraI | TTTAAA | 1 cut(s) | 127 |
| DraIII | CACNNNGTG | 1 cut(s) | 277 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 431 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 431 |
| Eam1104I | CTCTTC | 4 cut(s) | 1182, 1268, 1308, 2159 |
| EarI | CTCTTC | 4 cut(s) | 1182, 1268, 1308, 2159 |
| EciI | GGCGGA | 2 cut(s) | 341, 2894 |
| Eco105I | TACGTA | 1 cut(s) | 500 |
| Eco130I | CCWWGG | 2 cut(s) | 906, 2100 |
| Eco147I | AGGCCT | 1 cut(s) | 266 |
| Eco31I | GGTCTC | 1 cut(s) | 2945 |
| Eco47I | GGWCC | 3 cut(s) | 256, 1598, 1886 |
| Eco57I | CTGAAG | 3 cut(s) | 1152, 2140, 2615 |
| Eco88I | CYCGRG | 1 cut(s) | 748 |
| Eco91I | GGTNACC | 1 cut(s) | 915 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2016 |
| EcoO65I | GGTNACC | 1 cut(s) | 915 |
| EcoRII | CCWGG | 6 cut(s) | 451, 504, 814, 1471, 1492, 2038 |
| EcoT14I | CCWWGG | 2 cut(s) | 906, 2100 |
| EcoT22I | ATGCAT | 2 cut(s) | 1297, 2477 |
| ErhI | CCWWGG | 2 cut(s) | 906, 2100 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1230, 1262 |
| FaqI | GGGAC | 4 cut(s) | 269, 538, 1348, 2533 |
| FauI | CCCGC | 2 cut(s) | 218, 2265 |
| FauNDI | CATATG | 1 cut(s) | 1297 |
| FbaI | TGATCA | 3 cut(s) | 3, 883, 1621 |
| FblI | GTMKAC | 1 cut(s) | 423 |
| FokI | GGATG | 9 cut(s) | 296, 986, 1316, 1331, 1928, 2299, 2417, 2729, 2897 |
| FspBI | CTAG | 4 cut(s) | 1266, 2163, 2309, 2324 |
| GlaI | GCGC | 2 cut(s) | 1377, 1505 |
| GsuI | CTGGAG | 1 cut(s) | 805 |
| HaeII | RGCGCY | 1 cut(s) | 1507 |
| HaeIII | GGCC | 8 cut(s) | 172, 203, 232, 266, 284, 619, 662, 1279 |
| HapII | CCGG | 3 cut(s) | 414, 522, 2946 |
| HgaI | GACGC | 3 cut(s) | 358, 1367, 2481 |
| HhaI | GCGC | 2 cut(s) | 1378, 1506 |
| Hin1I | GRCGYC | 1 cut(s) | 369 |
| Hin6I | GCGC | 2 cut(s) | 1376, 1504 |
| HinP1I | GCGC | 2 cut(s) | 1376, 1504 |
| HincII | GTYRAC | 1 cut(s) | 424 |
| HindII | GTYRAC | 1 cut(s) | 424 |
| HindIII | AAGCTT | 6 cut(s) | 563, 2442, 2483, 2513, 2540, 2579 |
| HpaII | CCGG | 3 cut(s) | 414, 522, 2946 |
| HphI | GGTGA | 8 cut(s) | 44, 169, 557, 893, 909, 1247, 2275, 2944 |
| Hpy166II | GTNNAC | 5 cut(s) | 45, 424, 1385, 2045, 2817 |
| Hpy188I | TCNGA | 7 cut(s) | 197, 295, 468, 984, 2320, 2595, 2977 |
| Hpy8I | GTNNAC | 5 cut(s) | 45, 424, 1385, 2045, 2817 |
| Hpy99I | CGWCG | 6 cut(s) | 238, 278, 368, 425, 1383, 3027 |
| HpyCH4III | ACNGT | 6 cut(s) | 132, 531, 577, 1391, 2025, 2590 |
| HpyCH4IV | ACGT | 2 cut(s) | 273, 499 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 360, 1285, 1512, 2235, 2266, 2921 |
| HpyF3I | CTNAG | 7 cut(s) | 386, 779, 1155, 1205, 2015, 2111, 2976 |
| HpySE526I | ACGT | 2 cut(s) | 273, 499 |
| Hsp92I | GRCGYC | 1 cut(s) | 369 |
| HspAI | GCGC | 2 cut(s) | 1376, 1504 |
| KpnI | GGTACC | 1 cut(s) | 2984 |
| Ksp22I | TGATCA | 3 cut(s) | 3, 883, 1621 |
| Kzo9I | GATC | 9 cut(s) | 3, 640, 757, 883, 979, 1445, 1621, 2320, 2989 |
| MaeI | CTAG | 4 cut(s) | 1266, 2163, 2309, 2324 |
| MaeII | ACGT | 2 cut(s) | 273, 499 |
| MalI | GATC | 9 cut(s) | 5, 642, 759, 885, 981, 1447, 1623, 2322, 2991 |
| MboI | GATC | 9 cut(s) | 3, 640, 757, 883, 979, 1445, 1621, 2320, 2989 |
| MfeI | CAATTG | 2 cut(s) | 1542, 1945 |
| MlyI | GAGTC | 6 cut(s) | 311, 796, 1099, 1370, 1831, 2029 |
| MmeI | TCCRAC | 3 cut(s) | 318, 1338, 2830 |
| Mph1103I | ATGCAT | 2 cut(s) | 1297, 2477 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1137 |
| MspA1I | CMGCKG | 3 cut(s) | 222, 539, 857 |
| MspI | CCGG | 3 cut(s) | 414, 522, 2946 |
| MspR9I | CCNGG | 7 cut(s) | 453, 506, 523, 816, 1473, 1494, 2040 |
| MunI | CAATTG | 2 cut(s) | 1542, 1945 |
| Mva1269I | GAATGC | 2 cut(s) | 1463, 2215 |
| MvaI | CCWGG | 6 cut(s) | 453, 506, 816, 1473, 1494, 2040 |
| MvnI | CGCG | 3 cut(s) | 363, 1378, 1596 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 360, 1285, 1512, 2235, 2266, 2921 |
| NciI | CCSGG | 1 cut(s) | 523 |
| NdeI | CATATG | 1 cut(s) | 1297 |
| NdeII | GATC | 9 cut(s) | 3, 640, 757, 883, 979, 1445, 1621, 2320, 2989 |
| NheI | GCTAGC | 1 cut(s) | 2162 |
| NlaIV | GGNNCC | 8 cut(s) | 231, 257, 418, 712, 1531, 2147, 2808, 2982 |
| NsiI | ATGCAT | 2 cut(s) | 1297, 2477 |
| NspI | RCATGY | 2 cut(s) | 1525, 1871 |
| PacI | TTAATTAA | 1 cut(s) | 3057 |
| PagI | TCATGA | 2 cut(s) | 1582, 3042 |
| PaqCI | CACCTGC | 3 cut(s) | 410, 1447, 2251 |
| PceI | AGGCCT | 1 cut(s) | 266 |
| PciI | ACATGT | 1 cut(s) | 1867 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 312, 429, 2912 |
| PctI | GAATGC | 2 cut(s) | 1463, 2215 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1137 |
| PfeI | GAWTC | 7 cut(s) | 483, 671, 1097, 1253, 1557, 2096, 2380 |
| PflFI | GACNNNGTC | 1 cut(s) | 368 |
| PfoI | TCCNGGA | 1 cut(s) | 521 |
| PleI | GAGTC | 6 cut(s) | 311, 795, 1099, 1369, 1830, 2029 |
| PpsI | GAGTC | 6 cut(s) | 311, 795, 1099, 1369, 1830, 2029 |
| Ppu21I | YACGTR | 1 cut(s) | 500 |
| PscI | ACATGT | 1 cut(s) | 1867 |
| PshBI | ATTAAT | 1 cut(s) | 3053 |
| Psp6I | CCWGG | 6 cut(s) | 451, 504, 814, 1471, 1492, 2038 |
| PspEI | GGTNACC | 1 cut(s) | 915 |
| PspGI | CCWGG | 6 cut(s) | 451, 504, 814, 1471, 1492, 2038 |
| PspN4I | GGNNCC | 8 cut(s) | 231, 257, 418, 712, 1531, 2147, 2808, 2982 |
| PspPI | GGNCC | 7 cut(s) | 170, 202, 230, 256, 617, 1598, 1886 |
| PstNI | CAGNNNCTG | 1 cut(s) | 542 |
| PsyI | GACNNNGTC | 1 cut(s) | 368 |
| PvuII | CAGCTG | 2 cut(s) | 539, 857 |
| RsaI | GTAC | 7 cut(s) | 239, 502, 777, 1705, 1986, 2255, 2982 |
| RsaNI | GTAC | 7 cut(s) | 238, 501, 776, 1704, 1985, 2254, 2981 |
| SalI | GTCGAC | 1 cut(s) | 422 |
| Sau3AI | GATC | 9 cut(s) | 3, 640, 757, 883, 979, 1445, 1621, 2320, 2989 |
| Sau96I | GGNCC | 7 cut(s) | 170, 202, 230, 256, 617, 1598, 1886 |
| ScaI | AGTACT | 2 cut(s) | 1705, 1986 |
| SchI | GAGTC | 6 cut(s) | 311, 796, 1099, 1370, 1831, 2029 |
| ScrFI | CCNGG | 7 cut(s) | 453, 506, 523, 816, 1473, 1494, 2040 |
| SinI | GGWCC | 3 cut(s) | 256, 1598, 1886 |
| SmlI | CTYRAG | 1 cut(s) | 2463 |
| SmoI | CTYRAG | 1 cut(s) | 2463 |
| SnaBI | TACGTA | 1 cut(s) | 500 |
| SseBI | AGGCCT | 1 cut(s) | 266 |
| SspI | AATATT | 3 cut(s) | 90, 159, 656 |
| SspMI | CTAG | 4 cut(s) | 1266, 2163, 2309, 2324 |
| StuI | AGGCCT | 1 cut(s) | 266 |
| StyD4I | CCNGG | 7 cut(s) | 451, 504, 521, 814, 1471, 1492, 2038 |
| StyI | CCWWGG | 2 cut(s) | 906, 2100 |
| TaaI | ACNGT | 6 cut(s) | 132, 531, 577, 1391, 2025, 2590 |
| TaiI | ACGT | 2 cut(s) | 276, 502 |
| TaqI | TCGA | 8 cut(s) | 106, 423, 639, 756, 1439, 2553, 2992, 3022 |
| TatI | WGTACW | 3 cut(s) | 775, 1703, 1984 |
| TauI | GCSGC | 2 cut(s) | 225, 2732 |
| TfiI | GAWTC | 7 cut(s) | 483, 671, 1097, 1253, 1557, 2096, 2380 |
| TspGWI | ACGGA | 6 cut(s) | 409, 421, 939, 1569, 2520, 2729 |
| Tth111I | GACNNNGTC | 1 cut(s) | 368 |
| VpaK11BI | GGWCC | 3 cut(s) | 256, 1598, 1886 |
| VspI | ATTAAT | 1 cut(s) | 3053 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2016 |
| XapI | RAATTY | 3 cut(s) | 461, 1976, 2293 |
| XceI | RCATGY | 2 cut(s) | 1525, 1871 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1728 |
| XmiI | GTMKAC | 1 cut(s) | 423 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1137 |
| XspI | CTAG | 4 cut(s) | 1266, 2163, 2309, 2324 |
| ZrmI | AGTACT | 2 cut(s) | 1705, 1986 |
| Zsp2I | ATGCAT | 2 cut(s) | 1297, 2477 |