Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005744

Physical Location & Seq

Genomic Coordinates Reverse (-)

104248 .. 113413

Gene Structure 9166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G000300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGAAAGAACAGAGACTATAGATAATTTCAAAGTTGGATCTCTGCCGACTTTAATTTACATTCCTGACTTCATTACGGATAATGAACAAACCATGCTTCTAAATAAGATATATGAAGCCCCTGTATCGAAGTGGAAATCTTTAAAGAATAGGAGGCTACAAAACTGGGGCGGTACTGTCCATGAAAAGGGTCTTCTACCACAGGATTTGCCCTCATGGCTAACCAAGATTACATACAAGATATATGAAGAATCAGGGCTTTTTCCATTGCCAATTAATCATGTCCTTATCAATGAATACCTTCCTGACCAAGGCATAATGGCACACCAGGATGGGCCTGCTTATTATCCAGTTGTAGCAATCTTGTCCCTCAGGTCACCTGTTGTTATGGACTTTACTCCCCATTCAAGAATGACATTGTGTAAAAGCACATGCACAAATGATGTTGAGGATACAAATTCTGATAGGGGAGTTATTAAGATTGATACAGATAAGTCAATGGATGAACACCATCCTTTTCCTGTCATATTAATGCCGTGCAGCTTGATGATATTCAAAGATACAGCATACTCGGATTACTTGCATGCTATCAAAGACAGTGAGGTACAATGTTATGATGGGGCTGTAAACGAAGTAGAAGCTCTACATGGGCAAGTTATGAATCATGCTTCGTCACAATTGGATGGACCTGTTGATGTAATGAAAACTGGGGACCTCAAGTGTATTCATAGAACTACCCCTAGAATTTCATTGACATGTCGATTAGTTCCGAAAGTTCATAAAAATGTGTTCAGGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_2

Protein Analysis

267

Amino Acids

30.26

Weight (kDa)

5.98

Isoelectric Point (pI)

33.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20350 AT4G20350 AT4G20350 AT4G20350 AT4G20350 AT4G20350 AT4G20350 AT4G20350 AT4G20350 AT4G20350 AT4G20350
fragaria_vesca	FvH4_3g46100 FvH4_3g46100 FvH4_3g46100 FvH4_3g46100 FvH4_3g46100
malus_domestica	MD11G1000200.v1.1
prunus_persica	Prupe.6G000300_v2.0.a1
pyrus_communis	pycom11g00020
rosa_chinensis	RchiOBHm_Chr5g0084171
rosa_laevigata	RLG00000037089
rosa_multiflora	Rmu_sc0005537.1_g000014
rosa_roxburghii	Rroxscaffold_1G00000460
rosa_samantha	Rh5AG542300 Rh5BG568300 Rh5CG589900 Rh5DG576300
rosa_wichuraiana	Rw5G050440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	171
AclWI	GGATC	1 cut(s)	46
AcsI	RAATTY	2 cut(s)	457, 744
AfaI	GTAC	2 cut(s)	175, 606
AfiI	CCNNNNNNNGG	2 cut(s)	187, 311
AflIII	ACRYGT	1 cut(s)	755
AgsI	TTSAA	3 cut(s)	31, 408, 556
AjnI	CCWGG	1 cut(s)	327
AluBI	AGCT	2 cut(s)	543, 641
AluI	AGCT	2 cut(s)	543, 641
Alw26I	GTCTC	1 cut(s)	8
AlwI	GGATC	1 cut(s)	46
AoxI	GGCC	1 cut(s)	335
ApeKI	GCWGC	1 cut(s)	540
ApoI	RAATTY	2 cut(s)	457, 744
AseI	ATTAAT	2 cut(s)	276, 530
Asp700I	GAANNNNTTC	1 cut(s)	300
AspS9I	GGNCC	3 cut(s)	335, 686, 712
AsuHPI	GGTGA	1 cut(s)	369
AvaII	GGWCC	2 cut(s)	686, 712
AxyI	CCTNAGG	1 cut(s)	371
BbsI	GAAGAC	1 cut(s)	185
BbvI	GCAGC	1 cut(s)	552
BccI	CCATC	4 cut(s)	326, 519, 611, 677
BceAI	ACGGC	1 cut(s)	520
BciT130I	CCWGG	1 cut(s)	329
BciVI	GTATCC	1 cut(s)	445
BcoDI	GTCTC	1 cut(s)	8
BfaI	CTAG	1 cut(s)	741
BfmI	CTRYAG	1 cut(s)	18
BfuI	GTATCC	1 cut(s)	445
BglI	GCCNNNNNGGC	1 cut(s)	217
BisI	GCNGC	1 cut(s)	541
BlsI	GCNGC	1 cut(s)	542
Bme1390I	CCNGG	1 cut(s)	329
Bme18I	GGWCC	2 cut(s)	686, 712
BmgT120I	GGNCC	3 cut(s)	335, 686, 712
BmiI	GGNNCC	1 cut(s)	713
BmrFI	CCNGG	1 cut(s)	329
BmrI	ACTGGG	2 cut(s)	175, 717
BmuI	ACTGGG	2 cut(s)	175, 717
BpiI	GAAGAC	1 cut(s)	185
BpuEI	CTTGAG	1 cut(s)	701
BsaJI	CCNNGG	1 cut(s)	310
Bsc4I	CCNNNNNNNGG	2 cut(s)	187, 311
Bse1I	ACTGG	3 cut(s)	170, 350, 712
Bse21I	CCTNAGG	1 cut(s)	371
Bse3DI	GCAATG	1 cut(s)	266
BseBI	CCWGG	1 cut(s)	329
BseDI	CCNNGG	1 cut(s)	310
BseGI	GGATG	4 cut(s)	337, 508, 511, 688
BseLI	CCNNNNNNNGG	2 cut(s)	187, 311
BseMI	GCAATG	1 cut(s)	266
BseMII	CTCAG	1 cut(s)	385
BseNI	ACTGG	3 cut(s)	170, 350, 712
BseXI	GCAGC	1 cut(s)	552
BsgI	GTGCAG	1 cut(s)	559
BshFI	GGCC	1 cut(s)	337
BslFI	GGGAC	2 cut(s)	352, 725
BslI	CCNNNNNNNGG	2 cut(s)	187, 311
BsmAI	GTCTC	1 cut(s)	8
BsmFI	GGGAC	2 cut(s)	352, 725
BsnI	GGCC	1 cut(s)	337
Bsp143I	GATC	1 cut(s)	38
BspACI	CCGC	1 cut(s)	171
BspANI	GGCC	1 cut(s)	337
BspCNI	CTCAG	1 cut(s)	384
BspLI	GGNNCC	1 cut(s)	713
BspPI	GGATC	1 cut(s)	46
BsrDI	GCAATG	1 cut(s)	266
BsrI	ACTGG	3 cut(s)	170, 350, 712
BssECI	CCNNGG	1 cut(s)	310
BssMI	GATC	1 cut(s)	38
BssT1I	CCWWGG	1 cut(s)	310
Bst2UI	CCWGG	1 cut(s)	329
Bst4CI	ACNGT	2 cut(s)	178, 599
BstC8I	GCNNGC	2 cut(s)	339, 585
BstDEI	CTNAG	1 cut(s)	371
BstEII	GGTNACC	1 cut(s)	375
BstENI	CCTNNNNNAGG	1 cut(s)	309
BstF5I	GGATG	4 cut(s)	337, 508, 511, 688
BstKTI	GATC	1 cut(s)	41
BstMAI	GTCTC	1 cut(s)	8
BstMBI	GATC	1 cut(s)	38
BstMWI	GCNNNNNNNGC	1 cut(s)	217
BstNI	CCWGG	1 cut(s)	329
BstNSI	RCATGY	3 cut(s)	435, 587, 759
BstPI	GGTNACC	1 cut(s)	375
BstSCI	CCNGG	1 cut(s)	327
BstSFI	CTRYAG	1 cut(s)	18
BstV1I	GCAGC	1 cut(s)	552
BstV2I	GAAGAC	1 cut(s)	185
BstX2I	RGATCY	1 cut(s)	38
BstYI	RGATCY	1 cut(s)	38
Bsu36I	CCTNAGG	1 cut(s)	371
BsuI	GTATCC	1 cut(s)	445
BsuRI	GGCC	1 cut(s)	337
BtsCI	GGATG	4 cut(s)	337, 508, 511, 688
BtsIMutI	CAGTG	1 cut(s)	604
Cac8I	GCNNGC	2 cut(s)	339, 585
Cfr13I	GGNCC	3 cut(s)	335, 686, 712
Csp6I	GTAC	2 cut(s)	174, 605
CspCI	CAANNNNNGTGG	2 cut(s)	189, 224
CviAII	CATG	9 cut(s)	94, 182, 216, 281, 432, 584, 647, 665, 756
CviJI	RGCY	8 cut(s)	119, 157, 220, 259, 337, 543, 623, 641
CviKI_1	RGCY	8 cut(s)	119, 157, 220, 259, 337, 543, 623, 641
CviQI	GTAC	2 cut(s)	174, 605
DdeI	CTNAG	1 cut(s)	371
DpnI	GATC	1 cut(s)	40
DpnII	GATC	1 cut(s)	38
DraI	TTTAAA	1 cut(s)	144
Eco130I	CCWWGG	1 cut(s)	310
Eco47I	GGWCC	2 cut(s)	686, 712
Eco81I	CCTNAGG	1 cut(s)	371
Eco91I	GGTNACC	1 cut(s)	375
EcoNI	CCTNNNNNAGG	1 cut(s)	309
EcoO109I	RGGNCCY	1 cut(s)	712
EcoO65I	GGTNACC	1 cut(s)	375
EcoRII	CCWGG	1 cut(s)	327
EcoT14I	CCWWGG	1 cut(s)	310
ErhI	CCWWGG	1 cut(s)	310
FaeI	CATG	9 cut(s)	97, 185, 219, 284, 435, 587, 650, 668, 759
FaqI	GGGAC	2 cut(s)	352, 725
FatI	CATG	9 cut(s)	93, 181, 215, 280, 431, 583, 646, 664, 755
Fnu4HI	GCNGC	1 cut(s)	541
FokI	GGATG	4 cut(s)	344, 498, 515, 695
Fsp4HI	GCNGC	1 cut(s)	541
FspBI	CTAG	1 cut(s)	741
GluI	GCNGC	1 cut(s)	541
HaeIII	GGCC	1 cut(s)	337
Hin1II	CATG	9 cut(s)	97, 185, 219, 284, 435, 587, 650, 668, 759
HinfI	GANTC	2 cut(s)	251, 661
HphI	GGTGA	1 cut(s)	369
Hpy166II	GTNNAC	1 cut(s)	628
Hpy188I	TCNGA	3 cut(s)	463, 574, 771
Hpy188III	TCNNGA	3 cut(s)	65, 305, 408
Hpy8I	GTNNAC	1 cut(s)	628
HpyAV	CCTTC	1 cut(s)	311
HpyCH4III	ACNGT	2 cut(s)	178, 599
HpyCH4V	TGCA	3 cut(s)	435, 540, 583
HpyF10VI	GCNNNNNNNGC	1 cut(s)	217
HpyF3I	CTNAG	1 cut(s)	371
Hsp92II	CATG	9 cut(s)	97, 185, 219, 284, 435, 587, 650, 668, 759
Kzo9I	GATC	1 cut(s)	38
Lsp1109I	GCAGC	1 cut(s)	552
MaeI	CTAG	1 cut(s)	741
MaeIII	GTNAC	2 cut(s)	375, 672
MalI	GATC	1 cut(s)	40
MboI	GATC	1 cut(s)	38
MboII	GAAGA	2 cut(s)	185, 260
MfeI	CAATTG	1 cut(s)	677
MflI	RGATCY	1 cut(s)	38
MluCI	AATT	6 cut(s)	25, 54, 273, 457, 677, 744
MmeI	TCCRAC	1 cut(s)	16
MnlI	CCTC	6 cut(s)	147, 223, 380, 442, 595, 725
MroXI	GAANNNNTTC	1 cut(s)	300
MseI	TTAA	5 cut(s)	53, 143, 276, 477, 530
MslI	CAYNNNNRTG	4 cut(s)	330, 530, 754, 783
MspR9I	CCNGG	1 cut(s)	329
MunI	CAATTG	1 cut(s)	677
MvaI	CCWGG	1 cut(s)	329
MwoI	GCNNNNNNNGC	1 cut(s)	217
NdeII	GATC	1 cut(s)	38
NlaIII	CATG	9 cut(s)	97, 185, 219, 284, 435, 587, 650, 668, 759
NlaIV	GGNNCC	1 cut(s)	713
NmuCI	GTSAC	2 cut(s)	375, 672
NspI	RCATGY	3 cut(s)	435, 587, 759
PaeI	GCATGC	1 cut(s)	587
PciI	ACATGT	1 cut(s)	755
PdmI	GAANNNNTTC	1 cut(s)	300
PfeI	GAWTC	2 cut(s)	251, 661
PkrI	GCNGC	1 cut(s)	542
PpuMI	RGGWCCY	1 cut(s)	712
PscI	ACATGT	1 cut(s)	755
PshBI	ATTAAT	2 cut(s)	276, 530
Psp5II	RGGWCCY	1 cut(s)	712
Psp6I	CCWGG	1 cut(s)	327
PspEI	GGTNACC	1 cut(s)	375
PspGI	CCWGG	1 cut(s)	327
PspN4I	GGNNCC	1 cut(s)	713
PspPI	GGNCC	3 cut(s)	335, 686, 712
PspPPI	RGGWCCY	1 cut(s)	712
PsuI	RGATCY	1 cut(s)	38
RsaI	GTAC	2 cut(s)	175, 606
RsaNI	GTAC	2 cut(s)	174, 605
RseI	CAYNNNNRTG	4 cut(s)	330, 530, 754, 783
SaqAI	TTAA	5 cut(s)	53, 143, 276, 477, 530
SatI	GCNGC	1 cut(s)	541
Sau3AI	GATC	1 cut(s)	38
Sau96I	GGNCC	3 cut(s)	335, 686, 712
ScrFI	CCNGG	1 cut(s)	329
SetI	ASST	9 cut(s)	303, 377, 382, 545, 606, 643, 691, 717, 797
SfcI	CTRYAG	1 cut(s)	18
SinI	GGWCC	2 cut(s)	686, 712
SmiMI	CAYNNNNRTG	4 cut(s)	330, 530, 754, 783
SmlI	CTYRAG	1 cut(s)	716
SmoI	CTYRAG	1 cut(s)	716
SphI	GCATGC	1 cut(s)	587
Sse9I	AATT	6 cut(s)	25, 54, 273, 457, 677, 744
SsiI	CCGC	1 cut(s)	171
SspMI	CTAG	1 cut(s)	741
StyD4I	CCNGG	1 cut(s)	327
StyI	CCWWGG	1 cut(s)	310
TaaI	ACNGT	2 cut(s)	178, 599
TaqI	TCGA	2 cut(s)	128, 760
TasI	AATT	6 cut(s)	25, 54, 273, 457, 677, 744
TfiI	GAWTC	2 cut(s)	251, 661
Tru1I	TTAA	5 cut(s)	53, 143, 276, 477, 530
Tru9I	TTAA	5 cut(s)	53, 143, 276, 477, 530
TscAI	CASTG	1 cut(s)	604
TseFI	GTSAC	2 cut(s)	375, 672
TseI	GCWGC	1 cut(s)	540
Tsp45I	GTSAC	2 cut(s)	375, 672
TspGWI	ACGGA	1 cut(s)	92
TspRI	CASTG	1 cut(s)	604
VpaK11BI	GGWCC	2 cut(s)	686, 712
VspI	ATTAAT	2 cut(s)	276, 530
XagI	CCTNNNNNAGG	1 cut(s)	309
XapI	RAATTY	2 cut(s)	457, 744
XceI	RCATGY	3 cut(s)	435, 587, 759
XmnI	GAANNNNTTC	1 cut(s)	300
XspI	CTAG	1 cut(s)	741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.