Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0005744

Physical Location & Seq

Genomic Coordinates Forward (+)

93116946 .. 93122440

Gene Structure 5495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG542300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGACGTCTTGTCAATGTCTTGTGTGGTGTTGTCTTAACAGAGAAATGGAAGGAAACCAGGCACTAAATAATTTCAAAGTTGGATCTCTGCCCACTTTAATATACATTCCTGACTTCATTACAGAAAATGAAGAAACTATACTTCTAAAAAATATTTATGATGCCCCTGTATCGAAGTGGAAATCTTTAAAGAATAGGAGGCTACAAAACTGGGGTGGTGTAGTTCATGAAAAGGGTCTGATATCACAGGATTTGCCCTCATGGTTAACAAAGATCACATGCAGGATATATGAAGAATCTGGGCTATTCCCATCGCCAATTAACCATGTCCTTATCAATGAATATCTTCCTAACCAAGGCATAATGGGACACCAGGATGGGCCAGCTTACTATCCAGTTGTAGCAATTCTGTCTCTTGGGTCACCTGTTGTTATGAATTTCACTCCCCATTCAAGATTGACATTGGGCGCAGGCACATGTACACATAATGCTATGTATTCAAATTCTGATGTGGGACTTTTCAAGAGTGATACAGATAAGTCGTTGGATGAACACCACCCATTTCCTGTCTTATTGATGCCGCGCAGTTTGCTTATATTCAAAGATAAAGCATACTCAGATTACTTGCATGCTATAAACGACAGTGAGGTACACAGTTATGATAAGGTTGTAAACGAAGCACAAACTCTACCTTGGCAAGGCCTAGATCATCCATCTTCACAATTGGATGGAACTGATGAAACATTGAATACTGTGGACCTCAAGAGTATTCATAGAACTACCACTAGAGTTTCTTTAACATGTCGATTAGTTTTGAAAGTTCATAAAAATTTGTTCAGGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_2

Protein Analysis

281

Amino Acids

31.79

Weight (kDa)

6.3

Isoelectric Point (pI)

39.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy_2	PF13532	67 - 269	1.3e-10	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20350 AT4G20350 AT4G20350 AT4G20350 AT4G20350 AT4G20350 AT4G20350 AT4G20350 AT4G20350 AT4G20350 AT4G20350
fragaria_vesca	FvH4_3g46100 FvH4_3g46100 FvH4_3g46100 FvH4_3g46100 FvH4_3g46100
malus_domestica	MD11G1000200.v1.1
prunus_persica	Prupe.6G000300_v2.0.a1
pyrus_communis	pycom11g00020
rosa_chinensis	RchiOBHm_Chr5g0084171
rosa_laevigata	RLG00000037089
rosa_multiflora	Rmu_sc0005537.1_g000014
rosa_roxburghii	Rroxscaffold_1G00000460
rosa_samantha	Rh5AG542300 Rh5BG568300 Rh5CG589900 Rh5DG576300
rosa_wichuraiana	Rw5G050440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	8
AccII	CGCG	1 cut(s)	583
AciI	CCGC	1 cut(s)	581
AclWI	GGATC	1 cut(s)	91
AcsI	RAATTY	3 cut(s)	436, 502, 829
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	481, 651
AfiI	CCNNNNNNNGG	2 cut(s)	356, 698
AflIII	ACRYGT	2 cut(s)	476, 800
AgsI	TTSAA	7 cut(s)	76, 453, 501, 523, 601, 748, 817
AhdI	GACNNNNNGTC	1 cut(s)	9
AjnI	CCWGG	2 cut(s)	57, 372
AluBI	AGCT	1 cut(s)	386
AluI	AGCT	1 cut(s)	386
Alw26I	GTCTC	1 cut(s)	417
AlwI	GGATC	1 cut(s)	91
AoxI	GGCC	2 cut(s)	380, 700
ApoI	RAATTY	3 cut(s)	436, 502, 829
Asp700I	GAANNNNTTC	1 cut(s)	345
AspLEI	GCGC	2 cut(s)	470, 585
AspS9I	GGNCC	2 cut(s)	380, 757
AsuHPI	GGTGA	1 cut(s)	414
AvaII	GGWCC	1 cut(s)	757
BarI	GAAGNNNNNNTAC	2 cut(s)	123, 155
BccI	CCATC	4 cut(s)	319, 371, 721, 722
BciT130I	CCWGG	2 cut(s)	59, 374
BcoDI	GTCTC	1 cut(s)	417
BfaI	CTAG	2 cut(s)	704, 786
BisI	GCNGC	1 cut(s)	581
BlsI	GCNGC	1 cut(s)	582
Bme1390I	CCNGG	2 cut(s)	59, 374
Bme18I	GGWCC	1 cut(s)	757
BmeRI	GACNNNNNGTC	1 cut(s)	9
BmgT120I	GGNCC	2 cut(s)	380, 757
BmrFI	CCNGG	2 cut(s)	59, 374
BmrI	ACTGGG	1 cut(s)	220
BmsI	GCATC	2 cut(s)	151, 567
BmuI	ACTGGG	1 cut(s)	220
BpuEI	CTTGAG	1 cut(s)	746
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	355, 692
Bsc4I	CCNNNNNNNGG	2 cut(s)	356, 698
Bse1I	ACTGG	2 cut(s)	215, 395
BseBI	CCWGG	2 cut(s)	59, 374
BseDI	CCNNGG	2 cut(s)	355, 692
BseGI	GGATG	4 cut(s)	382, 553, 709, 733
BseLI	CCNNNNNNNGG	2 cut(s)	356, 698
BseMII	CTCAG	1 cut(s)	630
BseNI	ACTGG	2 cut(s)	215, 395
Bsh1236I	CGCG	1 cut(s)	583
BshFI	GGCC	2 cut(s)	382, 702
BslFI	GGGAC	2 cut(s)	381, 528
BslI	CCNNNNNNNGG	2 cut(s)	356, 698
BsmAI	GTCTC	1 cut(s)	417
BsmFI	GGGAC	2 cut(s)	381, 528
BsnI	GGCC	2 cut(s)	382, 702
Bsp1407I	TGTACA	1 cut(s)	479
Bsp143I	GATC	3 cut(s)	83, 273, 706
BspACI	CCGC	1 cut(s)	581
BspANI	GGCC	2 cut(s)	382, 702
BspCNI	CTCAG	1 cut(s)	629
BspFNI	CGCG	1 cut(s)	583
BspHI	TCATGA	1 cut(s)	226
BspPI	GGATC	1 cut(s)	91
BsrGI	TGTACA	1 cut(s)	479
BsrI	ACTGG	2 cut(s)	215, 395
BssECI	CCNNGG	2 cut(s)	355, 692
BssMI	GATC	3 cut(s)	83, 273, 706
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	2 cut(s)	355, 692
Bst2UI	CCWGG	2 cut(s)	59, 374
Bst4CI	ACNGT	3 cut(s)	644, 656, 754
BstACI	GRCGYC	1 cut(s)	5
BstAUI	TGTACA	1 cut(s)	479
BstC8I	GCNNGC	3 cut(s)	384, 472, 630
BstDEI	CTNAG	1 cut(s)	616
BstEII	GGTNACC	1 cut(s)	420
BstENI	CCTNNNNNAGG	2 cut(s)	354, 696
BstF5I	GGATG	4 cut(s)	382, 553, 709, 733
BstFNI	CGCG	1 cut(s)	583
BstHHI	GCGC	2 cut(s)	470, 585
BstKTI	GATC	3 cut(s)	86, 276, 709
BstMAI	GTCTC	1 cut(s)	417
BstMBI	GATC	3 cut(s)	83, 273, 706
BstMWI	GCNNNNNNNGC	1 cut(s)	589
BstNI	CCWGG	2 cut(s)	59, 374
BstNSI	RCATGY	4 cut(s)	282, 480, 632, 804
BstPI	GGTNACC	1 cut(s)	420
BstSCI	CCNGG	2 cut(s)	57, 372
BstUI	CGCG	1 cut(s)	583
BstX2I	RGATCY	1 cut(s)	83
BstYI	RGATCY	1 cut(s)	83
BsuRI	GGCC	2 cut(s)	382, 702
BtgZI	GCGATG	1 cut(s)	297
BtsCI	GGATG	4 cut(s)	382, 553, 709, 733
BtsIMutI	CAGTG	1 cut(s)	649
Cac8I	GCNNGC	3 cut(s)	384, 472, 630
CciI	TCATGA	1 cut(s)	226
CfoI	GCGC	2 cut(s)	470, 585
Cfr13I	GGNCC	2 cut(s)	380, 757
Csp6I	GTAC	2 cut(s)	480, 650
CviAII	CATG	7 cut(s)	227, 261, 279, 326, 477, 629, 801
CviJI	RGCY	5 cut(s)	202, 304, 382, 386, 702
CviKI_1	RGCY	5 cut(s)	202, 304, 382, 386, 702
CviQI	GTAC	2 cut(s)	480, 650
DdeI	CTNAG	1 cut(s)	616
DpnI	GATC	3 cut(s)	85, 275, 708
DpnII	GATC	3 cut(s)	83, 273, 706
DraI	TTTAAA	1 cut(s)	189
DriI	GACNNNNNGTC	1 cut(s)	9
Eam1105I	GACNNNNNGTC	1 cut(s)	9
Eco130I	CCWWGG	2 cut(s)	355, 692
Eco147I	AGGCCT	1 cut(s)	702
Eco32I	GATATC	1 cut(s)	243
Eco47I	GGWCC	1 cut(s)	757
Eco91I	GGTNACC	1 cut(s)	420
EcoNI	CCTNNNNNAGG	2 cut(s)	354, 696
EcoO65I	GGTNACC	1 cut(s)	420
EcoRII	CCWGG	2 cut(s)	57, 372
EcoRV	GATATC	1 cut(s)	243
EcoT14I	CCWWGG	2 cut(s)	355, 692
ErhI	CCWWGG	2 cut(s)	355, 692
FaeI	CATG	7 cut(s)	230, 264, 282, 329, 480, 632, 804
FaqI	GGGAC	2 cut(s)	381, 528
FatI	CATG	7 cut(s)	226, 260, 278, 325, 476, 628, 800
Fnu4HI	GCNGC	1 cut(s)	581
FokI	GGATG	4 cut(s)	389, 560, 696, 740
Fsp4HI	GCNGC	1 cut(s)	581
FspBI	CTAG	2 cut(s)	704, 786
GlaI	GCGC	2 cut(s)	469, 584
GluI	GCNGC	1 cut(s)	581
HaeIII	GGCC	2 cut(s)	382, 702
HhaI	GCGC	2 cut(s)	470, 585
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	7 cut(s)	230, 264, 282, 329, 480, 632, 804
Hin6I	GCGC	2 cut(s)	468, 583
HinP1I	GCGC	2 cut(s)	468, 583
HincII	GTYRAC	1 cut(s)	267
HindII	GTYRAC	1 cut(s)	267
HinfI	GANTC	1 cut(s)	296
HpaI	GTTAAC	1 cut(s)	267
HphI	GGTGA	1 cut(s)	414
Hpy166II	GTNNAC	5 cut(s)	267, 482, 652, 673, 757
Hpy188I	TCNGA	3 cut(s)	240, 508, 619
Hpy188III	TCNNGA	5 cut(s)	110, 227, 453, 523, 763
Hpy8I	GTNNAC	5 cut(s)	267, 482, 652, 673, 757
HpyAV	CCTTC	1 cut(s)	44
HpyCH4III	ACNGT	3 cut(s)	644, 656, 754
HpyCH4IV	ACGT	1 cut(s)	5
HpyCH4V	TGCA	2 cut(s)	282, 628
HpyF10VI	GCNNNNNNNGC	1 cut(s)	589
HpyF3I	CTNAG	1 cut(s)	616
HpySE526I	ACGT	1 cut(s)	5
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	7 cut(s)	230, 264, 282, 329, 480, 632, 804
HspAI	GCGC	2 cut(s)	468, 583
KspAI	GTTAAC	1 cut(s)	267
Kzo9I	GATC	3 cut(s)	83, 273, 706
LweI	GCATC	2 cut(s)	151, 567
MaeI	CTAG	2 cut(s)	704, 786
MaeII	ACGT	1 cut(s)	5
MaeIII	GTNAC	1 cut(s)	420
MalI	GATC	3 cut(s)	85, 275, 708
MboI	GATC	3 cut(s)	83, 273, 706
MboII	GAAGA	4 cut(s)	143, 305, 338, 708
MfeI	CAATTG	1 cut(s)	722
MflI	RGATCY	1 cut(s)	83
MluCI	AATT	7 cut(s)	70, 318, 405, 436, 502, 722, 829
MmeI	TCCRAC	2 cut(s)	61, 525
MnlI	CCTC	4 cut(s)	192, 268, 640, 770
MroXI	GAANNNNTTC	1 cut(s)	345
MseI	TTAA	6 cut(s)	36, 98, 188, 266, 321, 797
MslI	CAYNNNNRTG	2 cut(s)	375, 657
MspR9I	CCNGG	2 cut(s)	59, 374
MunI	CAATTG	1 cut(s)	722
MvaI	CCWGG	2 cut(s)	59, 374
MvnI	CGCG	1 cut(s)	583
MwoI	GCNNNNNNNGC	1 cut(s)	589
NdeII	GATC	3 cut(s)	83, 273, 706
NlaIII	CATG	7 cut(s)	230, 264, 282, 329, 480, 632, 804
NmuCI	GTSAC	1 cut(s)	420
NspI	RCATGY	4 cut(s)	282, 480, 632, 804
PaeI	GCATGC	1 cut(s)	632
PagI	TCATGA	1 cut(s)	226
PceI	AGGCCT	1 cut(s)	702
PciI	ACATGT	2 cut(s)	476, 800
PdmI	GAANNNNTTC	1 cut(s)	345
PfeI	GAWTC	1 cut(s)	296
PkrI	GCNGC	1 cut(s)	582
PscI	ACATGT	2 cut(s)	476, 800
Psp6I	CCWGG	2 cut(s)	57, 372
PspEI	GGTNACC	1 cut(s)	420
PspGI	CCWGG	2 cut(s)	57, 372
PspPI	GGNCC	2 cut(s)	380, 757
PsuI	RGATCY	1 cut(s)	83
RsaI	GTAC	2 cut(s)	481, 651
RsaNI	GTAC	2 cut(s)	480, 650
RseI	CAYNNNNRTG	2 cut(s)	375, 657
SaqAI	TTAA	6 cut(s)	36, 98, 188, 266, 321, 797
SatI	GCNGC	1 cut(s)	581
Sau3AI	GATC	3 cut(s)	83, 273, 706
Sau96I	GGNCC	2 cut(s)	380, 757
ScrFI	CCNGG	2 cut(s)	59, 374
SetI	ASST	8 cut(s)	8, 388, 427, 651, 669, 694, 762, 842
SfaNI	GCATC	2 cut(s)	151, 567
SinI	GGWCC	1 cut(s)	757
SmiMI	CAYNNNNRTG	2 cut(s)	375, 657
SmlI	CTYRAG	1 cut(s)	761
SmoI	CTYRAG	1 cut(s)	761
SphI	GCATGC	1 cut(s)	632
Sse9I	AATT	7 cut(s)	70, 318, 405, 436, 502, 722, 829
SseBI	AGGCCT	1 cut(s)	702
SsiI	CCGC	1 cut(s)	581
SspI	AATATT	1 cut(s)	154
SspMI	CTAG	2 cut(s)	704, 786
StuI	AGGCCT	1 cut(s)	702
StyD4I	CCNGG	2 cut(s)	57, 372
StyI	CCWWGG	2 cut(s)	355, 692
TaaI	ACNGT	3 cut(s)	644, 656, 754
TaiI	ACGT	1 cut(s)	8
TaqI	TCGA	2 cut(s)	173, 805
TasI	AATT	7 cut(s)	70, 318, 405, 436, 502, 722, 829
TatI	WGTACW	1 cut(s)	479
TauI	GCSGC	1 cut(s)	583
TfiI	GAWTC	1 cut(s)	296
Tru1I	TTAA	6 cut(s)	36, 98, 188, 266, 321, 797
Tru9I	TTAA	6 cut(s)	36, 98, 188, 266, 321, 797
TscAI	CASTG	1 cut(s)	649
TseFI	GTSAC	1 cut(s)	420
Tsp45I	GTSAC	1 cut(s)	420
TspRI	CASTG	1 cut(s)	649
VpaK11BI	GGWCC	1 cut(s)	757
XagI	CCTNNNNNAGG	2 cut(s)	354, 696
XapI	RAATTY	3 cut(s)	436, 502, 829
XceI	RCATGY	4 cut(s)	282, 480, 632, 804
XmnI	GAANNNNTTC	1 cut(s)	345
XspI	CTAG	2 cut(s)	704, 786
ZraI	GACGTC	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.