Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005537.1

Orthogroup ID

OG0005744

Physical Location & Seq

Genomic Coordinates Reverse (-)

41139 .. 47935

Gene Structure 6797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005537.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

atgggccgggcctggccggacgactcctacccaatggggacggggacggggaatccccagtttcttattacagggattggggcggaagctagaactcaaaaggctgcccctccatcatttgcagtttgtgagggtcggctgggacttcggctcagcagagaaatggaaggaaaccaggcagtaaataatttcaaagttggatctctgcccactttaatatacattcctgacttcattacagaaaatgaagaaactatacttcaaaaaaatatttatgatgcccctgtatcgaagtggaaatctttaaagaataggaggctacaaaactggggtggtgtagttcatgaaaagggtctgatatcacaggatttgccctcatggttaacaaagatcacatgcaggatatatgaagaatctgggctattcccatcgccaattaaccatgtccttatcaatgaatatcttcctaaccaaggcataatgggacaccaggatgggccagcttactatccagttgtagcaattctgtctcttgggtcacctgttgttatgaatttcactccccattcaagattgacattgggcgcaggcacatgtacacataatgctatgtattcaaattctgatgtgggacttttcaagagtgatacagataagtcgttggatgaacaccacccatttcctgtcttattgatgccacgcagtttgcttatattcaaagataaagcatactcagattacttgcatgctataaacgacagtgaggtacacagttatgataaggttgtaaacgaagcacaaactcgaccttggcaaggcctagatcatccatcttcacaattggatggaactgatgaaacattgaatactgtggacctcaagagcaaaaagaatttggatgtagtgactatgggacttttggagggaccatctaagcaggttgagcaacaaaaaagaaagagaggccggcctctgggaagtgtgaataacttgccttatggcatggcagggaaagggaaaaatgccaagaatgagggtgactcgggaaagaaggttccaaacaagagcaggaagaccaacctgatgccgaggttgttagctgctgaggggactgaagatggtgctacctccaaccctaaggggaaggagatggtgctttcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_2

Protein Analysis

387

Amino Acids

42.6

Weight (kDa)

8.23

Isoelectric Point (pI)

37.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20350 AT4G20350 AT4G20350 AT4G20350 AT4G20350 AT4G20350 AT4G20350 AT4G20350 AT4G20350 AT4G20350 AT4G20350
fragaria_vesca	FvH4_3g46100 FvH4_3g46100 FvH4_3g46100 FvH4_3g46100 FvH4_3g46100
malus_domestica	MD11G1000200.v1.1
prunus_persica	Prupe.6G000300_v2.0.a1
pyrus_communis	pycom11g00020
rosa_chinensis	RchiOBHm_Chr5g0084171
rosa_laevigata	RLG00000037089
rosa_multiflora	Rmu_sc0005537.1_g000014
rosa_roxburghii	Rroxscaffold_1G00000460
rosa_samantha	Rh5AG542300 Rh5BG568300 Rh5CG589900 Rh5DG576300
rosa_wichuraiana	Rw5G050440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	928
AciI	CCGC	1 cut(s)	83
AclWI	GGATC	1 cut(s)	208
AcoI	YGGCCR	1 cut(s)	14
AcsI	RAATTY	3 cut(s)	553, 619, 892
AcuI	CTGAAG	1 cut(s)	1134
AfaI	GTAC	2 cut(s)	598, 768
AfiI	CCNNNNNNNGG	3 cut(s)	473, 815, 973
AflIII	ACRYGT	1 cut(s)	593
AgsI	TTSAA	7 cut(s)	193, 263, 570, 618, 640, 718, 865
AjnI	CCWGG	3 cut(s)	11, 174, 489
AloI	GAACNNNNNNTCC	2 cut(s)	1038, 1070
AluBI	AGCT	3 cut(s)	89, 503, 1100
AluI	AGCT	3 cut(s)	89, 503, 1100
Alw26I	GTCTC	1 cut(s)	534
AlwI	GGATC	1 cut(s)	208
Ama87I	CYCGRG	1 cut(s)	1042
AoxI	GGCC	7 cut(s)	4, 9, 14, 497, 817, 964, 968
ApeKI	GCWGC	2 cut(s)	104, 1100
ApoI	RAATTY	3 cut(s)	553, 619, 892
Asp700I	GAANNNNTTC	1 cut(s)	462
AspLEI	GCGC	1 cut(s)	587
AspS9I	GGNCC	5 cut(s)	4, 9, 497, 874, 926
AsuC2I	CCSGG	1 cut(s)	8
AsuHPI	GGTGA	2 cut(s)	531, 1049
AvaI	CYCGRG	1 cut(s)	1042
AvaII	GGWCC	2 cut(s)	874, 926
AxyI	CCTNAGG	1 cut(s)	1137
BarI	GAAGNNNNNNTAC	2 cut(s)	240, 272
BbsI	GAAGAC	1 cut(s)	1079
BbvCI	CCTCAGC	1 cut(s)	1104
BbvI	GCAGC	2 cut(s)	91, 1087
BccI	CCATC	8 cut(s)	121, 436, 488, 838, 839, 937, 1112, 1144
BciT130I	CCWGG	3 cut(s)	13, 176, 491
BcnI	CCSGG	1 cut(s)	8
BcoDI	GTCTC	1 cut(s)	534
BfaI	CTAG	2 cut(s)	90, 821
BfuAI	ACCTGC	1 cut(s)	928
BisI	GCNGC	2 cut(s)	105, 1101
BlpI	GCTNAGC	1 cut(s)	152
BlsI	GCNGC	2 cut(s)	106, 1102
Bme1390I	CCNGG	4 cut(s)	8, 13, 176, 491
Bme18I	GGWCC	2 cut(s)	874, 926
BmeT110I	CYCGRG	1 cut(s)	1042
BmgT120I	GGNCC	5 cut(s)	4, 9, 497, 874, 926
BmiI	GGNNCC	2 cut(s)	927, 1056
BmrFI	CCNGG	4 cut(s)	8, 13, 176, 491
BmrI	ACTGGG	2 cut(s)	52, 337
BmsI	GCATC	3 cut(s)	268, 684, 1074
BmuI	ACTGGG	2 cut(s)	52, 337
BpiI	GAAGAC	1 cut(s)	1079
BplI	GAGNNNNNCTC	2 cut(s)	1025, 1057
Bpu10I	CCTNAGC	1 cut(s)	1104
Bpu1102I	GCTNAGC	1 cut(s)	152
BpuEI	CTTGAG	1 cut(s)	863
BpuMI	CCSGG	1 cut(s)	8
BsaJI	CCNNGG	3 cut(s)	472, 809, 1088
Bsc4I	CCNNNNNNNGG	3 cut(s)	473, 815, 973
Bse118I	RCCGGY	1 cut(s)	966
Bse1I	ACTGG	3 cut(s)	58, 332, 512
Bse21I	CCTNAGG	1 cut(s)	1137
BseBI	CCWGG	3 cut(s)	13, 176, 491
BseDI	CCNNGG	3 cut(s)	472, 809, 1088
BseGI	GGATG	5 cut(s)	499, 670, 826, 850, 904
BseLI	CCNNNNNNNGG	3 cut(s)	473, 815, 973
BseMII	CTCAG	3 cut(s)	166, 747, 1095
BseNI	ACTGG	3 cut(s)	58, 332, 512
BseXI	GCAGC	2 cut(s)	91, 1087
BseYI	CCCAGC	1 cut(s)	139
BshFI	GGCC	7 cut(s)	6, 11, 16, 499, 819, 966, 970
BsiHKCI	CYCGRG	1 cut(s)	1042
BsiSI	CCGG	3 cut(s)	7, 17, 967
BslFI	GGGAC	8 cut(s)	52, 58, 156, 498, 645, 927, 939, 1123
BslI	CCNNNNNNNGG	3 cut(s)	473, 815, 973
BsmAI	GTCTC	1 cut(s)	534
BsmFI	GGGAC	8 cut(s)	52, 58, 156, 498, 645, 927, 939, 1123
BsnI	GGCC	7 cut(s)	6, 11, 16, 499, 819, 966, 970
BsoBI	CYCGRG	1 cut(s)	1042
Bsp1407I	TGTACA	1 cut(s)	596
Bsp143I	GATC	3 cut(s)	200, 390, 823
Bsp1720I	GCTNAGC	1 cut(s)	152
BspACI	CCGC	1 cut(s)	83
BspANI	GGCC	7 cut(s)	6, 11, 16, 499, 819, 966, 970
BspCNI	CTCAG	3 cut(s)	165, 746, 1096
BspHI	TCATGA	1 cut(s)	343
BspLI	GGNNCC	2 cut(s)	927, 1056
BspMI	ACCTGC	1 cut(s)	928
BspPI	GGATC	1 cut(s)	208
BsrFI	RCCGGY	1 cut(s)	966
BsrGI	TGTACA	1 cut(s)	596
BsrI	ACTGG	3 cut(s)	58, 332, 512
BssAI	RCCGGY	1 cut(s)	966
BssECI	CCNNGG	3 cut(s)	472, 809, 1088
BssMI	GATC	3 cut(s)	200, 390, 823
BssT1I	CCWWGG	2 cut(s)	472, 809
Bst2UI	CCWGG	3 cut(s)	13, 176, 491
Bst4CI	ACNGT	3 cut(s)	761, 773, 871
BstAUI	TGTACA	1 cut(s)	596
BstC8I	GCNNGC	4 cut(s)	501, 589, 747, 968
BstDEI	CTNAG	6 cut(s)	152, 733, 933, 1104, 1137, 1161
BstEII	GGTNACC	1 cut(s)	537
BstENI	CCTNNNNNAGG	2 cut(s)	471, 813
BstF5I	GGATG	5 cut(s)	499, 670, 826, 850, 904
BstHHI	GCGC	1 cut(s)	587
BstKTI	GATC	3 cut(s)	203, 393, 826
BstMAI	GTCTC	1 cut(s)	534
BstMBI	GATC	3 cut(s)	200, 390, 823
BstMWI	GCNNNNNNNGC	1 cut(s)	943
BstNI	CCWGG	3 cut(s)	13, 176, 491
BstNSI	RCATGY	3 cut(s)	399, 597, 749
BstPI	GGTNACC	1 cut(s)	537
BstSCI	CCNGG	4 cut(s)	6, 11, 174, 489
BstV1I	GCAGC	2 cut(s)	91, 1087
BstV2I	GAAGAC	1 cut(s)	1079
BstX2I	RGATCY	1 cut(s)	200
BstYI	RGATCY	1 cut(s)	200
Bsu36I	CCTNAGG	1 cut(s)	1137
BsuRI	GGCC	7 cut(s)	6, 11, 16, 499, 819, 966, 970
BtgZI	GCGATG	1 cut(s)	414
BtsCI	GGATG	5 cut(s)	499, 670, 826, 850, 904
BtsIMutI	CAGTG	1 cut(s)	766
BveI	ACCTGC	1 cut(s)	928
Cac8I	GCNNGC	4 cut(s)	501, 589, 747, 968
CciI	TCATGA	1 cut(s)	343
CfoI	GCGC	1 cut(s)	587
Cfr10I	RCCGGY	1 cut(s)	966
Cfr13I	GGNCC	5 cut(s)	4, 9, 497, 874, 926
Csp6I	GTAC	2 cut(s)	597, 767
CspCI	CAANNNNNGTGG	2 cut(s)	687, 722
CviAII	CATG	7 cut(s)	344, 378, 396, 443, 594, 746, 1003
CviQI	GTAC	2 cut(s)	597, 767
DdeI	CTNAG	6 cut(s)	152, 733, 933, 1104, 1137, 1161
DpnI	GATC	3 cut(s)	202, 392, 825
DpnII	GATC	3 cut(s)	200, 390, 823
DraI	TTTAAA	1 cut(s)	306
EaeI	YGGCCR	1 cut(s)	14
EciI	GGCGGA	1 cut(s)	98
Eco130I	CCWWGG	2 cut(s)	472, 809
Eco147I	AGGCCT	1 cut(s)	819
Eco32I	GATATC	1 cut(s)	360
Eco47I	GGWCC	2 cut(s)	874, 926
Eco57I	CTGAAG	1 cut(s)	1134
Eco81I	CCTNAGG	1 cut(s)	1137
Eco88I	CYCGRG	1 cut(s)	1042
Eco91I	GGTNACC	1 cut(s)	537
EcoNI	CCTNNNNNAGG	2 cut(s)	471, 813
EcoO65I	GGTNACC	1 cut(s)	537
EcoRII	CCWGG	3 cut(s)	11, 174, 489
EcoRV	GATATC	1 cut(s)	360
EcoT14I	CCWWGG	2 cut(s)	472, 809
ErhI	CCWWGG	2 cut(s)	472, 809
FaeI	CATG	7 cut(s)	347, 381, 399, 446, 597, 749, 1006
FaqI	GGGAC	8 cut(s)	52, 58, 156, 498, 645, 927, 939, 1123
FatI	CATG	7 cut(s)	343, 377, 395, 442, 593, 745, 1002
Fnu4HI	GCNGC	2 cut(s)	105, 1101
FokI	GGATG	5 cut(s)	506, 677, 813, 857, 911
FseI	GGCCGGCC	1 cut(s)	970
Fsp4HI	GCNGC	2 cut(s)	105, 1101
FspBI	CTAG	2 cut(s)	90, 821
GlaI	GCGC	1 cut(s)	586
GluI	GCNGC	2 cut(s)	105, 1101
GsaI	CCCAGC	1 cut(s)	143
HaeIII	GGCC	7 cut(s)	6, 11, 16, 499, 819, 966, 970
HapII	CCGG	3 cut(s)	7, 17, 967
HhaI	GCGC	1 cut(s)	587
Hin1II	CATG	7 cut(s)	347, 381, 399, 446, 597, 749, 1006
Hin6I	GCGC	1 cut(s)	585
HinP1I	GCGC	1 cut(s)	585
HincII	GTYRAC	1 cut(s)	384
HindII	GTYRAC	1 cut(s)	384
HinfI	GANTC	4 cut(s)	23, 52, 413, 1040
HpaI	GTTAAC	1 cut(s)	384
HpaII	CCGG	3 cut(s)	7, 17, 967
HphI	GGTGA	2 cut(s)	531, 1049
Hpy166II	GTNNAC	5 cut(s)	384, 599, 769, 790, 874
Hpy188I	TCNGA	3 cut(s)	357, 625, 736
Hpy188III	TCNNGA	6 cut(s)	227, 344, 570, 640, 880, 1044
Hpy8I	GTNNAC	5 cut(s)	384, 599, 769, 790, 874
HpyAV	CCTTC	3 cut(s)	161, 1045, 1138
HpyCH4III	ACNGT	3 cut(s)	761, 773, 871
HpyCH4V	TGCA	3 cut(s)	122, 399, 745
HpyF10VI	GCNNNNNNNGC	1 cut(s)	943
HpyF3I	CTNAG	6 cut(s)	152, 733, 933, 1104, 1137, 1161
Hsp92II	CATG	7 cut(s)	347, 381, 399, 446, 597, 749, 1006
HspAI	GCGC	1 cut(s)	585
KroI	GCCGGC	1 cut(s)	966
KroNI	GCCGGC	1 cut(s)	968
KspAI	GTTAAC	1 cut(s)	384
Kzo9I	GATC	3 cut(s)	200, 390, 823
Lsp1109I	GCAGC	2 cut(s)	91, 1087
LweI	GCATC	3 cut(s)	268, 684, 1074
MaeI	CTAG	2 cut(s)	90, 821
MaeIII	GTNAC	3 cut(s)	537, 904, 1037
MalI	GATC	3 cut(s)	202, 392, 825
MboI	GATC	3 cut(s)	200, 390, 823
MboII	GAAGA	6 cut(s)	260, 422, 455, 825, 1084, 1127
MfeI	CAATTG	1 cut(s)	839
MflI	RGATCY	1 cut(s)	200
MluCI	AATT	7 cut(s)	187, 435, 522, 553, 619, 839, 892
MlyI	GAGTC	2 cut(s)	17, 1034
MmeI	TCCRAC	3 cut(s)	178, 642, 1155
MroNI	GCCGGC	1 cut(s)	966
MroXI	GAANNNNTTC	1 cut(s)	462
MseI	TTAA	4 cut(s)	215, 305, 383, 438
MslI	CAYNNNNRTG	2 cut(s)	492, 774
MspI	CCGG	3 cut(s)	7, 17, 967
MspR9I	CCNGG	4 cut(s)	8, 13, 176, 491
MunI	CAATTG	1 cut(s)	839
MvaI	CCWGG	3 cut(s)	13, 176, 491
MwoI	GCNNNNNNNGC	1 cut(s)	943
NaeI	GCCGGC	1 cut(s)	968
NciI	CCSGG	1 cut(s)	8
NdeII	GATC	3 cut(s)	200, 390, 823
NgoMIV	GCCGGC	1 cut(s)	966
NlaIII	CATG	7 cut(s)	347, 381, 399, 446, 597, 749, 1006
NlaIV	GGNNCC	2 cut(s)	927, 1056
NmeAIII	GCCGAG	1 cut(s)	1113
NmuCI	GTSAC	3 cut(s)	537, 904, 1037
NspI	RCATGY	3 cut(s)	399, 597, 749
PaeI	GCATGC	1 cut(s)	749
PagI	TCATGA	1 cut(s)	343
PceI	AGGCCT	1 cut(s)	819
PciI	ACATGT	1 cut(s)	593
PdiI	GCCGGC	1 cut(s)	968
PdmI	GAANNNNTTC	1 cut(s)	462
PfeI	GAWTC	2 cut(s)	52, 413
PkrI	GCNGC	2 cut(s)	106, 1102
PleI	GAGTC	2 cut(s)	17, 1034
PpsI	GAGTC	2 cut(s)	17, 1034
PscI	ACATGT	1 cut(s)	593
Psp6I	CCWGG	3 cut(s)	11, 174, 489
PspEI	GGTNACC	1 cut(s)	537
PspFI	CCCAGC	1 cut(s)	139
PspGI	CCWGG	3 cut(s)	11, 174, 489
PspN4I	GGNNCC	2 cut(s)	927, 1056
PspPI	GGNCC	5 cut(s)	4, 9, 497, 874, 926
PsuI	RGATCY	1 cut(s)	200
RigI	GGCCGGCC	1 cut(s)	970
RsaI	GTAC	2 cut(s)	598, 768
RsaNI	GTAC	2 cut(s)	597, 767
RseI	CAYNNNNRTG	2 cut(s)	492, 774
SaqAI	TTAA	4 cut(s)	215, 305, 383, 438
SatI	GCNGC	2 cut(s)	105, 1101
Sau3AI	GATC	3 cut(s)	200, 390, 823
Sau96I	GGNCC	5 cut(s)	4, 9, 497, 874, 926
SchI	GAGTC	2 cut(s)	17, 1034
ScrFI	CCNGG	4 cut(s)	8, 13, 176, 491
SfaNI	GCATC	3 cut(s)	268, 684, 1074
SinI	GGWCC	2 cut(s)	874, 926
SmiMI	CAYNNNNRTG	2 cut(s)	492, 774
SmlI	CTYRAG	1 cut(s)	878
SmoI	CTYRAG	1 cut(s)	878
SphI	GCATGC	1 cut(s)	749
Sse9I	AATT	7 cut(s)	187, 435, 522, 553, 619, 839, 892
SseBI	AGGCCT	1 cut(s)	819
SsiI	CCGC	1 cut(s)	83
SspI	AATATT	1 cut(s)	271
SspMI	CTAG	2 cut(s)	90, 821
StuI	AGGCCT	1 cut(s)	819
StyD4I	CCNGG	4 cut(s)	6, 11, 174, 489
StyI	CCWWGG	2 cut(s)	472, 809
TaaI	ACNGT	3 cut(s)	761, 773, 871
TaqI	TCGA	2 cut(s)	290, 805
TasI	AATT	7 cut(s)	187, 435, 522, 553, 619, 839, 892
TatI	WGTACW	1 cut(s)	596
TfiI	GAWTC	2 cut(s)	52, 413
Tru1I	TTAA	4 cut(s)	215, 305, 383, 438
Tru9I	TTAA	4 cut(s)	215, 305, 383, 438
TscAI	CASTG	1 cut(s)	766
TseFI	GTSAC	3 cut(s)	537, 904, 1037
TseI	GCWGC	2 cut(s)	104, 1100
Tsp45I	GTSAC	3 cut(s)	537, 904, 1037
TspDTI	ATGAA	9 cut(s)	223, 261, 332, 360, 423, 471, 566, 681, 870
TspRI	CASTG	1 cut(s)	766
VpaK11BI	GGWCC	2 cut(s)	874, 926
XagI	CCTNNNNNAGG	2 cut(s)	471, 813
XapI	RAATTY	3 cut(s)	553, 619, 892
XceI	RCATGY	3 cut(s)	399, 597, 749
XmnI	GAANNNNTTC	1 cut(s)	462
XspI	CTAG	2 cut(s)	90, 821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.