Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0005744

Physical Location & Seq

Genomic Coordinates Forward (+)

89796157 .. 89797779

Gene Structure 1623 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG568300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGGACACCAGGATGGGCCAGCTTACTATCCAGTTGTAGCAATTCTGTCTCTTGGGTCACCTGTTGTTATGAATTTCACTCCCCATTCAAGATTGACATTGGGCGCAGGCACATGTACACATAATGCTATGTATTCAAATTCTGATGTGGGACTTTTCAAGAGTGATACAGATAAGTCGTTGGATGAACACCACCCATTTCCTGTCTTATTGATGCCACGCAGTTTGCTTATATTCAAAGATAAAGCATACTCAGATTACTTGCATGCTATAAACGACAGTGAGGTACACAGTTATGATAAGGTTGTAAACGAAGCACAAACTCGACCTTGGCAAGGCCTAGATCATCCATCTTCACAATTGGATGGAACTGATGAAACATTGAATACTGTGGACCTCAAGAGTATTCATAGAACTACCACTAGAGTTTCTTTAACATGTCGATTAGTTTTGAAGGTTCATAAAAATTTGTTCAGGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_2

Protein Analysis

160

Amino Acids

17.95

Weight (kDa)

6.53

Isoelectric Point (pI)

33.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20350 AT4G20350 AT4G20350 AT4G20350 AT4G20350 AT4G20350 AT4G20350 AT4G20350 AT4G20350 AT4G20350 AT4G20350
fragaria_vesca	FvH4_3g46100 FvH4_3g46100 FvH4_3g46100 FvH4_3g46100 FvH4_3g46100
malus_domestica	MD11G1000200.v1.1
prunus_persica	Prupe.6G000300_v2.0.a1
pyrus_communis	pycom11g00020
rosa_chinensis	RchiOBHm_Chr5g0084171
rosa_laevigata	RLG00000037089
rosa_multiflora	Rmu_sc0005537.1_g000014
rosa_roxburghii	Rroxscaffold_1G00000460
rosa_samantha	Rh5AG542300 Rh5BG568300 Rh5CG589900 Rh5DG576300
rosa_wichuraiana	Rw5G050440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	73, 139, 466
AfaI	GTAC	2 cut(s)	118, 288
AfiI	CCNNNNNNNGG	1 cut(s)	335
AflIII	ACRYGT	2 cut(s)	113, 437
AgsI	TTSAA	6 cut(s)	90, 138, 160, 238, 385, 454
AjnI	CCWGG	1 cut(s)	9
AluBI	AGCT	1 cut(s)	23
AluI	AGCT	1 cut(s)	23
Alw26I	GTCTC	1 cut(s)	54
AoxI	GGCC	2 cut(s)	17, 337
ApoI	RAATTY	3 cut(s)	73, 139, 466
AspLEI	GCGC	1 cut(s)	107
AspS9I	GGNCC	2 cut(s)	17, 394
AsuHPI	GGTGA	1 cut(s)	51
AvaII	GGWCC	1 cut(s)	394
BccI	CCATC	3 cut(s)	8, 358, 359
BciT130I	CCWGG	1 cut(s)	11
BcoDI	GTCTC	1 cut(s)	54
BfaI	CTAG	2 cut(s)	341, 423
Bme1390I	CCNGG	1 cut(s)	11
Bme18I	GGWCC	1 cut(s)	394
BmgT120I	GGNCC	2 cut(s)	17, 394
BmrFI	CCNGG	1 cut(s)	11
BmsI	GCATC	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	383
BsaJI	CCNNGG	1 cut(s)	329
Bsc4I	CCNNNNNNNGG	1 cut(s)	335
Bse1I	ACTGG	1 cut(s)	32
BseBI	CCWGG	1 cut(s)	11
BseDI	CCNNGG	1 cut(s)	329
BseGI	GGATG	4 cut(s)	19, 190, 346, 370
BseLI	CCNNNNNNNGG	1 cut(s)	335
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	1 cut(s)	32
BshFI	GGCC	2 cut(s)	19, 339
BslFI	GGGAC	2 cut(s)	18, 165
BslI	CCNNNNNNNGG	1 cut(s)	335
BsmAI	GTCTC	1 cut(s)	54
BsmFI	GGGAC	2 cut(s)	18, 165
BsnI	GGCC	2 cut(s)	19, 339
Bsp1407I	TGTACA	1 cut(s)	116
Bsp143I	GATC	1 cut(s)	343
BspANI	GGCC	2 cut(s)	19, 339
BspCNI	CTCAG	1 cut(s)	266
BsrGI	TGTACA	1 cut(s)	116
BsrI	ACTGG	1 cut(s)	32
BssECI	CCNNGG	1 cut(s)	329
BssMI	GATC	1 cut(s)	343
BssT1I	CCWWGG	1 cut(s)	329
Bst2UI	CCWGG	1 cut(s)	11
Bst4CI	ACNGT	3 cut(s)	281, 293, 391
BstAUI	TGTACA	1 cut(s)	116
BstC8I	GCNNGC	3 cut(s)	21, 109, 267
BstDEI	CTNAG	1 cut(s)	253
BstEII	GGTNACC	1 cut(s)	57
BstENI	CCTNNNNNAGG	1 cut(s)	333
BstF5I	GGATG	4 cut(s)	19, 190, 346, 370
BstHHI	GCGC	1 cut(s)	107
BstKTI	GATC	1 cut(s)	346
BstMAI	GTCTC	1 cut(s)	54
BstMBI	GATC	1 cut(s)	343
BstNI	CCWGG	1 cut(s)	11
BstNSI	RCATGY	3 cut(s)	117, 269, 441
BstPI	GGTNACC	1 cut(s)	57
BstSCI	CCNGG	1 cut(s)	9
BsuRI	GGCC	2 cut(s)	19, 339
BtsCI	GGATG	4 cut(s)	19, 190, 346, 370
BtsIMutI	CAGTG	1 cut(s)	286
Cac8I	GCNNGC	3 cut(s)	21, 109, 267
CfoI	GCGC	1 cut(s)	107
Cfr13I	GGNCC	2 cut(s)	17, 394
Csp6I	GTAC	2 cut(s)	117, 287
CspCI	CAANNNNNGTGG	2 cut(s)	207, 242
CviAII	CATG	3 cut(s)	114, 266, 438
CviJI	RGCY	3 cut(s)	19, 23, 339
CviKI_1	RGCY	3 cut(s)	19, 23, 339
CviQI	GTAC	2 cut(s)	117, 287
DdeI	CTNAG	1 cut(s)	253
DpnI	GATC	1 cut(s)	345
DpnII	GATC	1 cut(s)	343
Eco130I	CCWWGG	1 cut(s)	329
Eco147I	AGGCCT	1 cut(s)	339
Eco47I	GGWCC	1 cut(s)	394
Eco91I	GGTNACC	1 cut(s)	57
EcoNI	CCTNNNNNAGG	1 cut(s)	333
EcoO65I	GGTNACC	1 cut(s)	57
EcoRII	CCWGG	1 cut(s)	9
EcoT14I	CCWWGG	1 cut(s)	329
ErhI	CCWWGG	1 cut(s)	329
FaeI	CATG	3 cut(s)	117, 269, 441
FaqI	GGGAC	2 cut(s)	18, 165
FatI	CATG	3 cut(s)	113, 265, 437
FokI	GGATG	4 cut(s)	26, 197, 333, 377
FspBI	CTAG	2 cut(s)	341, 423
GlaI	GCGC	1 cut(s)	106
HaeIII	GGCC	2 cut(s)	19, 339
HhaI	GCGC	1 cut(s)	107
Hin1II	CATG	3 cut(s)	117, 269, 441
Hin6I	GCGC	1 cut(s)	105
HinP1I	GCGC	1 cut(s)	105
HphI	GGTGA	1 cut(s)	51
Hpy166II	GTNNAC	4 cut(s)	119, 289, 310, 394
Hpy188I	TCNGA	2 cut(s)	145, 256
Hpy188III	TCNNGA	3 cut(s)	90, 160, 400
Hpy8I	GTNNAC	4 cut(s)	119, 289, 310, 394
HpyAV	CCTTC	1 cut(s)	448
HpyCH4III	ACNGT	3 cut(s)	281, 293, 391
HpyCH4V	TGCA	1 cut(s)	265
HpyF3I	CTNAG	1 cut(s)	253
Hsp92II	CATG	3 cut(s)	117, 269, 441
HspAI	GCGC	1 cut(s)	105
Kzo9I	GATC	1 cut(s)	343
LpnPI	CCDG	7 cut(s)	23, 33, 45, 75, 93, 216, 460
LweI	GCATC	1 cut(s)	204
MaeI	CTAG	2 cut(s)	341, 423
MaeIII	GTNAC	1 cut(s)	57
MalI	GATC	1 cut(s)	345
MboI	GATC	1 cut(s)	343
MboII	GAAGA	1 cut(s)	345
MfeI	CAATTG	1 cut(s)	359
MluCI	AATT	5 cut(s)	42, 73, 139, 359, 466
MmeI	TCCRAC	1 cut(s)	162
MnlI	CCTC	2 cut(s)	277, 407
MseI	TTAA	1 cut(s)	434
MslI	CAYNNNNRTG	2 cut(s)	12, 294
MspR9I	CCNGG	1 cut(s)	11
MunI	CAATTG	1 cut(s)	359
MvaI	CCWGG	1 cut(s)	11
NdeII	GATC	1 cut(s)	343
NlaIII	CATG	3 cut(s)	117, 269, 441
NmuCI	GTSAC	1 cut(s)	57
NspI	RCATGY	3 cut(s)	117, 269, 441
PaeI	GCATGC	1 cut(s)	269
PceI	AGGCCT	1 cut(s)	339
PciI	ACATGT	2 cut(s)	113, 437
PscI	ACATGT	2 cut(s)	113, 437
Psp6I	CCWGG	1 cut(s)	9
PspEI	GGTNACC	1 cut(s)	57
PspGI	CCWGG	1 cut(s)	9
PspPI	GGNCC	2 cut(s)	17, 394
RsaI	GTAC	2 cut(s)	118, 288
RsaNI	GTAC	2 cut(s)	117, 287
RseI	CAYNNNNRTG	2 cut(s)	12, 294
SaqAI	TTAA	1 cut(s)	434
Sau3AI	GATC	1 cut(s)	343
Sau96I	GGNCC	2 cut(s)	17, 394
ScrFI	CCNGG	1 cut(s)	11
SetI	ASST	8 cut(s)	25, 64, 288, 306, 331, 399, 459, 479
SfaNI	GCATC	1 cut(s)	204
SinI	GGWCC	1 cut(s)	394
SmiMI	CAYNNNNRTG	2 cut(s)	12, 294
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
SphI	GCATGC	1 cut(s)	269
Sse9I	AATT	5 cut(s)	42, 73, 139, 359, 466
SseBI	AGGCCT	1 cut(s)	339
SspMI	CTAG	2 cut(s)	341, 423
StuI	AGGCCT	1 cut(s)	339
StyD4I	CCNGG	1 cut(s)	9
StyI	CCWWGG	1 cut(s)	329
TaaI	ACNGT	3 cut(s)	281, 293, 391
TaqI	TCGA	2 cut(s)	325, 442
TasI	AATT	5 cut(s)	42, 73, 139, 359, 466
TatI	WGTACW	1 cut(s)	116
Tru1I	TTAA	1 cut(s)	434
Tru9I	TTAA	1 cut(s)	434
TscAI	CASTG	1 cut(s)	286
TseFI	GTSAC	1 cut(s)	57
Tsp45I	GTSAC	1 cut(s)	57
TspDTI	ATGAA	5 cut(s)	86, 201, 390, 398, 449
TspRI	CASTG	1 cut(s)	286
VpaK11BI	GGWCC	1 cut(s)	394
XagI	CCTNNNNNAGG	1 cut(s)	333
XapI	RAATTY	3 cut(s)	73, 139, 466
XceI	RCATGY	3 cut(s)	117, 269, 441
XspI	CTAG	2 cut(s)	341, 423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.