Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005744

Physical Location & Seq

Genomic Coordinates Reverse (-)

850832 .. 856258

Gene Structure 5427 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00000460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGAAGGAAAGCAGGCACTAAATAATTTCAAAGTTGGATCTCTACCCACTTTAATATACATTCCTGACTTCATTACAGAAAATGAAGAAACTATACTTCTAAAAAATATTTATGATGCCCCTGTATCGAAGTGGAAATCTTTAAAGAATAGGAGGCTACAAAACTGGGGTGGTGTAGTTCATGAAAAGGGTCTGATATCACAGGATTTGCCCTCATGGTTGACAAAGATCACATGCAGGATATATGAAGAATCTGGGCTATTCCCATCGCCAATTAACCATGTCCTTATCAATGAATATCTTCCTAACCAAGGCATAATGGCACACCAGGATGGGCCAGCTTACTATCCAGTTGTAGCAATTCTGTCTCTTGGGTCACCTGTTGTTATGAATTTCACTCCCCATTCAAGATTGACATTGGGTGCAGGCACATGTACACATAATGCTATGTATTCAAATTCTGACGGGGGACTTTTCAAGAGTGATACAGATAAGTCGTCGGATGAACACCACCCATTTCCTGTCTTATTGATGCCGCGCAGTTTGCTTATATTCAAAGATAAAGCATACTCAGATTACTTGCATGATATAAACAACAGTGAGGTACACAGTTATGATAAGGCTGTAAACGAAGCACAAGCTCGACCTTGGCAAGGTCTAGATCATCCATCTTCACAATTGGATGGAACTGTTGAAACATTGAATACTGTGGACCTCAAGAGTATTCATAGAACTACCACTAGAGTTTCTTTAACATGTCGATTAGTTTTGAAAGTTCATAAAAATTTGTTCAGGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_2

Protein Analysis

266

Amino Acids

29.99

Weight (kDa)

6.86

Isoelectric Point (pI)

41.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy_2	PF13532	52 - 254	5.9e-11	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20350 AT4G20350 AT4G20350 AT4G20350 AT4G20350 AT4G20350 AT4G20350 AT4G20350 AT4G20350 AT4G20350 AT4G20350
fragaria_vesca	FvH4_3g46100 FvH4_3g46100 FvH4_3g46100 FvH4_3g46100 FvH4_3g46100
malus_domestica	MD11G1000200.v1.1
prunus_persica	Prupe.6G000300_v2.0.a1
pyrus_communis	pycom11g00020
rosa_chinensis	RchiOBHm_Chr5g0084171
rosa_laevigata	RLG00000037089
rosa_multiflora	Rmu_sc0005537.1_g000014
rosa_roxburghii	Rroxscaffold_1G00000460
rosa_samantha	Rh5AG542300 Rh5BG568300 Rh5CG589900 Rh5DG576300
rosa_wichuraiana	Rw5G050440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	538
AciI	CCGC	1 cut(s)	536
AclWI	GGATC	1 cut(s)	46
AcsI	RAATTY	3 cut(s)	391, 457, 784
AfaI	GTAC	2 cut(s)	436, 606
AfiI	CCNNNNNNNGG	2 cut(s)	311, 653
AflIII	ACRYGT	2 cut(s)	431, 755
AgsI	TTSAA	8 cut(s)	31, 408, 456, 478, 556, 695, 703, 772
AjnI	CCWGG	1 cut(s)	327
AluBI	AGCT	2 cut(s)	341, 641
AluI	AGCT	2 cut(s)	341, 641
Alw26I	GTCTC	1 cut(s)	372
AlwI	GGATC	1 cut(s)	46
AoxI	GGCC	1 cut(s)	335
ApoI	RAATTY	3 cut(s)	391, 457, 784
Asp700I	GAANNNNTTC	1 cut(s)	300
AspLEI	GCGC	1 cut(s)	540
AspS9I	GGNCC	2 cut(s)	335, 712
AsuHPI	GGTGA	1 cut(s)	369
AvaII	GGWCC	1 cut(s)	712
BarI	GAAGNNNNNNTAC	2 cut(s)	78, 110
BccI	CCATC	4 cut(s)	274, 326, 676, 677
BciT130I	CCWGG	1 cut(s)	329
BcoDI	GTCTC	1 cut(s)	372
BfaI	CTAG	2 cut(s)	659, 741
BisI	GCNGC	1 cut(s)	536
BlsI	GCNGC	1 cut(s)	537
Bme1390I	CCNGG	1 cut(s)	329
Bme18I	GGWCC	1 cut(s)	712
BmgT120I	GGNCC	2 cut(s)	335, 712
BmrFI	CCNGG	1 cut(s)	329
BmrI	ACTGGG	1 cut(s)	175
BmsI	GCATC	2 cut(s)	106, 522
BmuI	ACTGGG	1 cut(s)	175
BpuEI	CTTGAG	1 cut(s)	701
BsaJI	CCNNGG	2 cut(s)	310, 647
Bsc4I	CCNNNNNNNGG	2 cut(s)	311, 653
Bse1I	ACTGG	2 cut(s)	170, 350
BseBI	CCWGG	1 cut(s)	329
BseDI	CCNNGG	2 cut(s)	310, 647
BseGI	GGATG	4 cut(s)	337, 508, 664, 688
BseLI	CCNNNNNNNGG	2 cut(s)	311, 653
BseMII	CTCAG	1 cut(s)	585
BseNI	ACTGG	2 cut(s)	170, 350
BsgI	GTGCAG	1 cut(s)	444
Bsh1236I	CGCG	1 cut(s)	538
BshFI	GGCC	1 cut(s)	337
BslFI	GGGAC	1 cut(s)	483
BslI	CCNNNNNNNGG	2 cut(s)	311, 653
BsmAI	GTCTC	1 cut(s)	372
BsmFI	GGGAC	1 cut(s)	483
BsnI	GGCC	1 cut(s)	337
Bsp1407I	TGTACA	1 cut(s)	434
Bsp143I	GATC	3 cut(s)	38, 228, 661
BspACI	CCGC	1 cut(s)	536
BspANI	GGCC	1 cut(s)	337
BspCNI	CTCAG	1 cut(s)	584
BspFNI	CGCG	1 cut(s)	538
BspHI	TCATGA	1 cut(s)	181
BspPI	GGATC	1 cut(s)	46
BsrGI	TGTACA	1 cut(s)	434
BsrI	ACTGG	2 cut(s)	170, 350
BssECI	CCNNGG	2 cut(s)	310, 647
BssMI	GATC	3 cut(s)	38, 228, 661
BssT1I	CCWWGG	2 cut(s)	310, 647
Bst2UI	CCWGG	1 cut(s)	329
Bst4CI	ACNGT	4 cut(s)	599, 611, 691, 709
BstAUI	TGTACA	1 cut(s)	434
BstC8I	GCNNGC	3 cut(s)	15, 339, 427
BstDEI	CTNAG	1 cut(s)	571
BstEII	GGTNACC	1 cut(s)	375
BstENI	CCTNNNNNAGG	2 cut(s)	309, 651
BstF5I	GGATG	4 cut(s)	337, 508, 664, 688
BstFNI	CGCG	1 cut(s)	538
BstHHI	GCGC	1 cut(s)	540
BstKTI	GATC	3 cut(s)	41, 231, 664
BstMAI	GTCTC	1 cut(s)	372
BstMBI	GATC	3 cut(s)	38, 228, 661
BstMWI	GCNNNNNNNGC	1 cut(s)	544
BstNI	CCWGG	1 cut(s)	329
BstNSI	RCATGY	3 cut(s)	237, 435, 759
BstPI	GGTNACC	1 cut(s)	375
BstSCI	CCNGG	1 cut(s)	327
BstUI	CGCG	1 cut(s)	538
BstX2I	RGATCY	1 cut(s)	38
BstYI	RGATCY	1 cut(s)	38
BsuRI	GGCC	1 cut(s)	337
BtgZI	GCGATG	1 cut(s)	252
BtsCI	GGATG	4 cut(s)	337, 508, 664, 688
BtsIMutI	CAGTG	1 cut(s)	604
Cac8I	GCNNGC	3 cut(s)	15, 339, 427
CciI	TCATGA	1 cut(s)	181
CfoI	GCGC	1 cut(s)	540
Cfr13I	GGNCC	2 cut(s)	335, 712
Csp6I	GTAC	2 cut(s)	435, 605
CviAII	CATG	7 cut(s)	182, 216, 234, 281, 432, 584, 756
CviJI	RGCY	6 cut(s)	157, 259, 337, 341, 623, 641
CviKI_1	RGCY	6 cut(s)	157, 259, 337, 341, 623, 641
CviQI	GTAC	2 cut(s)	435, 605
DdeI	CTNAG	1 cut(s)	571
DpnI	GATC	3 cut(s)	40, 230, 663
DpnII	GATC	3 cut(s)	38, 228, 661
DraI	TTTAAA	1 cut(s)	144
Eco130I	CCWWGG	2 cut(s)	310, 647
Eco32I	GATATC	1 cut(s)	198
Eco47I	GGWCC	1 cut(s)	712
Eco91I	GGTNACC	1 cut(s)	375
EcoNI	CCTNNNNNAGG	2 cut(s)	309, 651
EcoO65I	GGTNACC	1 cut(s)	375
EcoRII	CCWGG	1 cut(s)	327
EcoRV	GATATC	1 cut(s)	198
EcoT14I	CCWWGG	2 cut(s)	310, 647
ErhI	CCWWGG	2 cut(s)	310, 647
FaeI	CATG	7 cut(s)	185, 219, 237, 284, 435, 587, 759
FaqI	GGGAC	1 cut(s)	483
FatI	CATG	7 cut(s)	181, 215, 233, 280, 431, 583, 755
Fnu4HI	GCNGC	1 cut(s)	536
FokI	GGATG	4 cut(s)	344, 515, 651, 695
Fsp4HI	GCNGC	1 cut(s)	536
FspBI	CTAG	2 cut(s)	659, 741
GlaI	GCGC	1 cut(s)	539
GluI	GCNGC	1 cut(s)	536
HaeIII	GGCC	1 cut(s)	337
HhaI	GCGC	1 cut(s)	540
Hin1II	CATG	7 cut(s)	185, 219, 237, 284, 435, 587, 759
Hin6I	GCGC	1 cut(s)	538
HinP1I	GCGC	1 cut(s)	538
HincII	GTYRAC	1 cut(s)	222
HindII	GTYRAC	1 cut(s)	222
HinfI	GANTC	1 cut(s)	251
HphI	GGTGA	1 cut(s)	369
Hpy166II	GTNNAC	5 cut(s)	222, 437, 607, 628, 712
Hpy188I	TCNGA	4 cut(s)	195, 463, 502, 574
Hpy188III	TCNNGA	6 cut(s)	65, 182, 408, 478, 659, 718
Hpy8I	GTNNAC	5 cut(s)	222, 437, 607, 628, 712
Hpy99I	CGWCG	1 cut(s)	502
HpyCH4III	ACNGT	4 cut(s)	599, 611, 691, 709
HpyCH4V	TGCA	3 cut(s)	237, 425, 583
HpyF10VI	GCNNNNNNNGC	1 cut(s)	544
HpyF3I	CTNAG	1 cut(s)	571
Hsp92II	CATG	7 cut(s)	185, 219, 237, 284, 435, 587, 759
HspAI	GCGC	1 cut(s)	538
Kzo9I	GATC	3 cut(s)	38, 228, 661
LweI	GCATC	2 cut(s)	106, 522
MaeI	CTAG	2 cut(s)	659, 741
MaeIII	GTNAC	1 cut(s)	375
MalI	GATC	3 cut(s)	40, 230, 663
MboI	GATC	3 cut(s)	38, 228, 661
MboII	GAAGA	4 cut(s)	98, 260, 293, 663
MfeI	CAATTG	1 cut(s)	677
MflI	RGATCY	1 cut(s)	38
MluCI	AATT	7 cut(s)	25, 273, 360, 391, 457, 677, 784
MmeI	TCCRAC	2 cut(s)	16, 480
MnlI	CCTC	4 cut(s)	147, 223, 595, 725
MroXI	GAANNNNTTC	1 cut(s)	300
MseI	TTAA	4 cut(s)	53, 143, 276, 752
MslI	CAYNNNNRTG	2 cut(s)	330, 612
MspR9I	CCNGG	1 cut(s)	329
MunI	CAATTG	1 cut(s)	677
MvaI	CCWGG	1 cut(s)	329
MvnI	CGCG	1 cut(s)	538
MwoI	GCNNNNNNNGC	1 cut(s)	544
NdeII	GATC	3 cut(s)	38, 228, 661
NlaIII	CATG	7 cut(s)	185, 219, 237, 284, 435, 587, 759
NmuCI	GTSAC	1 cut(s)	375
NspI	RCATGY	3 cut(s)	237, 435, 759
PagI	TCATGA	1 cut(s)	181
PciI	ACATGT	2 cut(s)	431, 755
PdmI	GAANNNNTTC	1 cut(s)	300
PfeI	GAWTC	1 cut(s)	251
PkrI	GCNGC	1 cut(s)	537
PscI	ACATGT	2 cut(s)	431, 755
Psp6I	CCWGG	1 cut(s)	327
PspEI	GGTNACC	1 cut(s)	375
PspGI	CCWGG	1 cut(s)	327
PspPI	GGNCC	2 cut(s)	335, 712
PsuI	RGATCY	1 cut(s)	38
RsaI	GTAC	2 cut(s)	436, 606
RsaNI	GTAC	2 cut(s)	435, 605
RseI	CAYNNNNRTG	2 cut(s)	330, 612
SaqAI	TTAA	4 cut(s)	53, 143, 276, 752
SatI	GCNGC	1 cut(s)	536
Sau3AI	GATC	3 cut(s)	38, 228, 661
Sau96I	GGNCC	2 cut(s)	335, 712
ScrFI	CCNGG	1 cut(s)	329
SetI	ASST	8 cut(s)	343, 382, 606, 643, 649, 658, 717, 797
SfaNI	GCATC	2 cut(s)	106, 522
SinI	GGWCC	1 cut(s)	712
SmiMI	CAYNNNNRTG	2 cut(s)	330, 612
SmlI	CTYRAG	1 cut(s)	716
SmoI	CTYRAG	1 cut(s)	716
Sse9I	AATT	7 cut(s)	25, 273, 360, 391, 457, 677, 784
SsiI	CCGC	1 cut(s)	536
SspI	AATATT	1 cut(s)	109
SspMI	CTAG	2 cut(s)	659, 741
StyD4I	CCNGG	1 cut(s)	327
StyI	CCWWGG	2 cut(s)	310, 647
TaaI	ACNGT	4 cut(s)	599, 611, 691, 709
TaqI	TCGA	3 cut(s)	128, 643, 760
TasI	AATT	7 cut(s)	25, 273, 360, 391, 457, 677, 784
TatI	WGTACW	1 cut(s)	434
TauI	GCSGC	1 cut(s)	538
TfiI	GAWTC	1 cut(s)	251
Tru1I	TTAA	4 cut(s)	53, 143, 276, 752
Tru9I	TTAA	4 cut(s)	53, 143, 276, 752
TscAI	CASTG	1 cut(s)	604
TseFI	GTSAC	1 cut(s)	375
Tsp45I	GTSAC	1 cut(s)	375
TspRI	CASTG	1 cut(s)	604
VpaK11BI	GGWCC	1 cut(s)	712
XagI	CCTNNNNNAGG	2 cut(s)	309, 651
XapI	RAATTY	3 cut(s)	391, 457, 784
XbaI	TCTAGA	1 cut(s)	658
XceI	RCATGY	3 cut(s)	237, 435, 759
XmnI	GAANNNNTTC	1 cut(s)	300
XspI	CTAG	2 cut(s)	659, 741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.