Prupe.6G037800_v2.0.a1

Protein of unknown function (DUF2488)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0010918
Physical Location & Seq
Forward (+)
2844145 .. 2847206
3062 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G037800.2

Sequence Viewer

Length: 693 bp
ATGTCAGGCGTGGCAACTCTTGGTCAGGCATGCTGGGCTGCTGCCGGCGTAAAGGTGAAGAAGGCAAAGACCGCCATTTCCCAAGCCCAAATTCAAAACCCAAAACCCAAATCTTTAGCTCTTCCCTTGTCAGCTAATTGCAGCCGCAACCTCTTCTCCTTCAGCCCCAAAGCCATCACCAAACCCTCCTCCTCCTCATCCGTCCGTACATCTGTCGCCGCCGTAGACTCCGACCAGCTCAGCTCCTCCGATTCCGCCGAAAAGCAAAAGGCGAGCAGGTACTATTTCGTTGTTGCGAATGCCAAGTTCATGCTGGACGAGGAGGAGCATTTCCAGGAGCAATTGTGTGAGCGGCTTCGCTACTATGGAGAGCGTAACAGAGAGCAGGACTTTTGGCTTGTGATCGAGCCCAAGTTCTTGGATAAGTTTCCCAACATTACTAAGAGATTAGGAAGACCTGCTGTGGCTTTGGTTTCGACCAATGGACCTTGGATTACGTTTATGAAGCTGAGACTGGACAGAGTGCTAGCAGAAAGTTTTGAAGCTGAGAGTCTAGAAGAGGCATTGGCCTCCACTCCAACCAATATTGAGTTTGAGAAACCGGAGAAATGGGTAGCACCTTATTCCAAGTACGAATCTGGGTGGTGGGGGCCCTTCTTGCCGCCAGGATCGAACGAGGAGGCCAAAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ycf54

Protein Analysis

231

Amino Acids

25.69

Weight (kDa)

8.66

Isoelectric Point (pI)

51.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 267, 466
AccBSI CCGCTC 1 cut(s) 352
AccI GTMKAC 1 cut(s) 225
AciI CCGC 6 cut(s) 72, 145, 219, 255, 352, 662
AclWI GGATC 1 cut(s) 676
AcsI RAATTY 1 cut(s) 90
AcuI CTGAAG 1 cut(s) 145
AfaI GTAC 3 cut(s) 208, 281, 632
AgsI TTSAA 2 cut(s) 95, 542
AjnI CCWGG 2 cut(s) 333, 664
AjuI GAANNNNNNNTTGG 2 cut(s) 75, 107
AluBI AGCT 6 cut(s) 119, 134, 238, 243, 508, 545
AluI AGCT 6 cut(s) 119, 134, 238, 243, 508, 545
Alw26I GTCTC 1 cut(s) 505
AlwI GGATC 1 cut(s) 676
AoxI GGCC 3 cut(s) 567, 650, 681
ApaI GGGCCC 1 cut(s) 654
ApeKI GCWGC 3 cut(s) 38, 41, 141
ApoI RAATTY 1 cut(s) 90
AspS9I GGNCC 3 cut(s) 485, 650, 651
AsuHPI GGTGA 2 cut(s) 67, 169
AsuNHI GCTAGC 1 cut(s) 526
AvaII GGWCC 1 cut(s) 485
BaeGI GKGCMC 1 cut(s) 654
BanII GRGCYC 2 cut(s) 411, 654
BbsI GAAGAC 1 cut(s) 460
BbvI GCAGC 3 cut(s) 25, 28, 153
BccI CCATC 1 cut(s) 182
BceAI ACGGC 1 cut(s) 206
BciT130I CCWGG 2 cut(s) 335, 666
BcoDI GTCTC 1 cut(s) 505
BfaI CTAG 2 cut(s) 527, 554
BfuAI ACCTGC 2 cut(s) 267, 466
BisI GCNGC 7 cut(s) 39, 42, 142, 145, 219, 353, 662
BlpI GCTNAGC 1 cut(s) 239
BlsI GCNGC 7 cut(s) 40, 43, 143, 146, 220, 354, 663
Bme1390I CCNGG 2 cut(s) 335, 666
Bme18I GGWCC 1 cut(s) 485
BmgT120I GGNCC 3 cut(s) 485, 650, 651
BmiI GGNNCC 2 cut(s) 651, 652
BmrFI CCNGG 2 cut(s) 335, 666
BmtI GCTAGC 1 cut(s) 530
BpiI GAAGAC 1 cut(s) 460
Bpu1102I GCTNAGC 1 cut(s) 239
BsaJI CCNNGG 1 cut(s) 488
BsaWI WCCGGW 1 cut(s) 601
BsaXI ACNNNNNCTCC 4 cut(s) 140, 170, 329, 359
Bse118I RCCGGY 1 cut(s) 44
Bse1I ACTGG 1 cut(s) 519
BseBI CCWGG 2 cut(s) 335, 666
BseDI CCNNGG 1 cut(s) 488
BseGI GGATG 1 cut(s) 197
BseMII CTCAG 3 cut(s) 253, 500, 537
BseNI ACTGG 1 cut(s) 519
BseRI GAGGAG 7 cut(s) 178, 181, 184, 235, 335, 338, 692
BseSI GKGCMC 1 cut(s) 654
BseXI GCAGC 3 cut(s) 25, 28, 153
BseYI CCCAGC 1 cut(s) 33
BshFI GGCC 3 cut(s) 569, 652, 683
BsiSI CCGG 2 cut(s) 45, 602
BsmAI GTCTC 1 cut(s) 505
BsmI GAATGC 1 cut(s) 304
BsnI GGCC 3 cut(s) 569, 652, 683
Bsp120I GGGCCC 1 cut(s) 650
Bsp1286I GDGCHC 2 cut(s) 411, 654
Bsp143I GATC 2 cut(s) 402, 668
Bsp1720I GCTNAGC 1 cut(s) 239
BspACI CCGC 6 cut(s) 72, 145, 219, 255, 352, 662
BspANI GGCC 3 cut(s) 569, 652, 683
BspCNI CTCAG 3 cut(s) 252, 501, 538
BspLI GGNNCC 2 cut(s) 651, 652
BspMI ACCTGC 2 cut(s) 267, 466
BspOI GCTAGC 1 cut(s) 530
BspPI GGATC 1 cut(s) 676
BspQI GCTCTTC 1 cut(s) 126
BsrBI CCGCTC 1 cut(s) 352
BsrFI RCCGGY 1 cut(s) 44
BsrI ACTGG 1 cut(s) 519
BssAI RCCGGY 1 cut(s) 44
BssECI CCNNGG 1 cut(s) 488
BssMI GATC 2 cut(s) 402, 668
BssT1I CCWWGG 1 cut(s) 488
Bst2UI CCWGG 2 cut(s) 335, 666
Bst6I CTCTTC 3 cut(s) 126, 158, 552
BstC8I GCNNGC 4 cut(s) 31, 46, 274, 528
BstDEI CTNAG 4 cut(s) 239, 441, 509, 546
BstF5I GGATG 1 cut(s) 197
BstKTI GATC 2 cut(s) 405, 671
BstMAI GTCTC 1 cut(s) 505
BstMBI GATC 2 cut(s) 402, 668
BstMWI GCNNNNNNNGC 3 cut(s) 35, 71, 658
BstNI CCWGG 2 cut(s) 335, 666
BstNSI RCATGY 1 cut(s) 33
BstSCI CCNGG 2 cut(s) 333, 664
BstSLI GKGCMC 1 cut(s) 654
BstV1I GCAGC 3 cut(s) 25, 28, 153
BstV2I GAAGAC 1 cut(s) 460
BstXI CCANNNNNNTGG 1 cut(s) 418
BsuRI GGCC 3 cut(s) 569, 652, 683
BtsCI GGATG 1 cut(s) 197
BveI ACCTGC 2 cut(s) 267, 466
Cac8I GCNNGC 4 cut(s) 31, 46, 274, 528
Cfr10I RCCGGY 1 cut(s) 44
Cfr13I GGNCC 3 cut(s) 485, 650, 651
Csp6I GTAC 3 cut(s) 207, 280, 631
CviAII CATG 2 cut(s) 30, 310
CviQI GTAC 3 cut(s) 207, 280, 631
DdeI CTNAG 4 cut(s) 239, 441, 509, 546
DpnI GATC 2 cut(s) 404, 670
DpnII GATC 2 cut(s) 402, 668
Eam1104I CTCTTC 3 cut(s) 126, 158, 552
EarI CTCTTC 3 cut(s) 126, 158, 552
EciI GGCGGA 1 cut(s) 244
Eco130I CCWWGG 1 cut(s) 488
Eco24I GRGCYC 2 cut(s) 411, 654
Eco47I GGWCC 1 cut(s) 485
Eco57I CTGAAG 1 cut(s) 145
EcoO109I RGGNCCY 2 cut(s) 650, 651
EcoRII CCWGG 2 cut(s) 333, 664
EcoT14I CCWWGG 1 cut(s) 488
EcoT38I GRGCYC 2 cut(s) 411, 654
ErhI CCWWGG 1 cut(s) 488
FaeI CATG 2 cut(s) 33, 313
FaiI YATR 4 cut(s) 31, 311, 366, 503
FatI CATG 2 cut(s) 29, 309
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 7 cut(s) 39, 42, 142, 145, 219, 353, 662
FokI GGATG 1 cut(s) 184
FriOI GRGCYC 2 cut(s) 411, 654
Fsp4HI GCNGC 7 cut(s) 39, 42, 142, 145, 219, 353, 662
FspBI CTAG 2 cut(s) 527, 554
GluI GCNGC 7 cut(s) 39, 42, 142, 145, 219, 353, 662
GsaI CCCAGC 1 cut(s) 37
HaeIII GGCC 3 cut(s) 569, 652, 683
HapII CCGG 2 cut(s) 45, 602
Hin1II CATG 2 cut(s) 33, 313
HinfI GANTC 4 cut(s) 227, 251, 550, 635
HpaII CCGG 2 cut(s) 45, 602
HphI GGTGA 2 cut(s) 67, 169
Hpy166II GTNNAC 1 cut(s) 226
Hpy188I TCNGA 2 cut(s) 232, 250
Hpy188III TCNNGA 1 cut(s) 554
Hpy8I GTNNAC 1 cut(s) 226
HpyAV CCTTC 3 cut(s) 55, 169, 664
HpyCH4IV ACGT 1 cut(s) 497
HpyCH4V TGCA 1 cut(s) 141
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 71, 658
HpyF3I CTNAG 4 cut(s) 239, 441, 509, 546
HpySE526I ACGT 1 cut(s) 497
Hsp92II CATG 2 cut(s) 33, 313
KroI GCCGGC 1 cut(s) 44
KroNI GCCGGC 1 cut(s) 46
Kzo9I GATC 2 cut(s) 402, 668
LguI GCTCTTC 1 cut(s) 126
LmnI GCTCC 3 cut(s) 248, 325, 337
Lsp1109I GCAGC 3 cut(s) 25, 28, 153
MaeI CTAG 2 cut(s) 527, 554
MaeII ACGT 1 cut(s) 497
MaeIII GTNAC 1 cut(s) 374
MalI GATC 2 cut(s) 404, 670
MbiI CCGCTC 1 cut(s) 352
MboI GATC 2 cut(s) 402, 668
MboII GAAGA 5 cut(s) 70, 113, 145, 465, 569
MfeI CAATTG 1 cut(s) 341
MhlI GDGCHC 2 cut(s) 411, 654
MluCI AATT 3 cut(s) 90, 136, 341
MlyI GAGTC 2 cut(s) 221, 559
MmeI TCCRAC 2 cut(s) 255, 602
MroNI GCCGGC 1 cut(s) 44
MspI CCGG 2 cut(s) 45, 602
MspR9I CCNGG 2 cut(s) 335, 666
MunI CAATTG 1 cut(s) 341
Mva1269I GAATGC 1 cut(s) 304
MvaI CCWGG 2 cut(s) 335, 666
MwoI GCNNNNNNNGC 3 cut(s) 35, 71, 658
NaeI GCCGGC 1 cut(s) 46
NdeII GATC 2 cut(s) 402, 668
NgoMIV GCCGGC 1 cut(s) 44
NheI GCTAGC 1 cut(s) 526
NlaIII CATG 2 cut(s) 33, 313
NlaIV GGNNCC 2 cut(s) 651, 652
NspI RCATGY 1 cut(s) 33
PaeI GCATGC 1 cut(s) 33
PciSI GCTCTTC 1 cut(s) 126
PctI GAATGC 1 cut(s) 304
PdiI GCCGGC 1 cut(s) 46
PfeI GAWTC 2 cut(s) 251, 635
PfoI TCCNGGA 1 cut(s) 333
PkrI GCNGC 7 cut(s) 40, 43, 143, 146, 220, 354, 663
PleI GAGTC 2 cut(s) 221, 558
PpsI GAGTC 2 cut(s) 221, 558
Psp6I CCWGG 2 cut(s) 333, 664
PspFI CCCAGC 1 cut(s) 33
PspGI CCWGG 2 cut(s) 333, 664
PspN4I GGNNCC 2 cut(s) 651, 652
PspOMI GGGCCC 1 cut(s) 650
PspPI GGNCC 3 cut(s) 485, 650, 651
RsaI GTAC 3 cut(s) 208, 281, 632
RsaNI GTAC 3 cut(s) 207, 280, 631
SapI GCTCTTC 1 cut(s) 126
SatI GCNGC 7 cut(s) 39, 42, 142, 145, 219, 353, 662
Sau3AI GATC 2 cut(s) 402, 668
Sau96I GGNCC 3 cut(s) 485, 650, 651
SchI GAGTC 2 cut(s) 221, 559
ScrFI CCNGG 2 cut(s) 335, 666
SduI GDGCHC 2 cut(s) 411, 654
SinI GGWCC 1 cut(s) 485
SphI GCATGC 1 cut(s) 33
Sse9I AATT 3 cut(s) 90, 136, 341
SsiI CCGC 6 cut(s) 72, 145, 219, 255, 352, 662
SspI AATATT 1 cut(s) 586
SspMI CTAG 2 cut(s) 527, 554
StyD4I CCNGG 2 cut(s) 333, 664
StyI CCWWGG 1 cut(s) 488
TaiI ACGT 1 cut(s) 500
TaqI TCGA 3 cut(s) 405, 476, 671
TasI AATT 3 cut(s) 90, 136, 341
TauI GCSGC 4 cut(s) 147, 221, 355, 664
TfiI GAWTC 2 cut(s) 251, 635
TseI GCWGC 3 cut(s) 38, 41, 141
TspDTI ATGAA 2 cut(s) 298, 518
TspGWI ACGGA 2 cut(s) 190, 194
VpaK11BI GGWCC 1 cut(s) 485
XapI RAATTY 1 cut(s) 90
XbaI TCTAGA 1 cut(s) 553
XceI RCATGY 1 cut(s) 33
XcmI CCANNNNNNNNNTGG 1 cut(s) 310
XmiI GTMKAC 1 cut(s) 225
XspI CTAG 2 cut(s) 527, 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.