Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0010918

Physical Location & Seq

Genomic Coordinates Forward (+)

3101268 .. 3103464

Gene Structure 2197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g03960.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGTACACATCATTTATTATATTATGTAGTATAACACTAGATAAGGCTGGCTTTGCTTATTATATCGAAGGAAGACACGCAGGGGAGGAAGAAGAAGAACCAGGAGGAGCAATGTCTGCCGTGGCAACTCTCGGTCAGGCATGCTGGGCCGCCGCCGCCGCCGTGAAATCGAAACCAACCACCGCCATCTCCCAAACCCACATCCGAAATCCAAAACCCAAATCTTTTTCTCTTCCTCTCTCAGCCAATTCCAGCTGCAACCACTTCTTCTCCTTCCCTCCCAAAACCACCCTCAAATCCTCCTCCTCCGTCCGTACATCTGTCGCCGCCGTCGACTCCGACCAGCTCAGCTCCTCCGATTCCGCCGATAAGGAAAAGCCGAGCAGGTACTATTTCGTGGTTGCGAATGCGAAGTTTATGCTCGATGACGAGGAGCATTTCCAGGAGCAATTGTGTGAGCGGCTTCGATACTATGGAGAGAAGAACAAAGAGCAGGACTTTTGGCTTGTGATCGAGCCCAAGTTCTTGGATAAGTTTCCTAACATTACTAAGAGATTAGGAAGGCCTGCCGTTGCTCTGGTTTCGACTAACGGACCTTGGATTACGTTTATGAAGCTGAGACTGGACAGAGTGTTAGCAGAAAGTTTTGAAGCTGCAAGTCTAGAAGAAGCATTAGCCTCCAATCCAACTAAGATCGATTTTGAGAAGCCGCAGAAATGGGTAGCACCTTATTCCAAGTATGAATCCGGGTGGTGGGAGCCCTTCTTACCGCCAGGATCAAAAGAGGAGGTCAAAGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ycf54

Protein Analysis

267

Amino Acids

29.76

Weight (kDa)

6.16

Isoelectric Point (pI)

51.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58250
fragaria_vesca	FvH4_3g41200
malus_domestica	MD03G1046500.v1.1 MD11G1049300.v1.1
prunus_persica	Prupe.6G037800_v2.0.a1 Prupe.6G037800_v2.0.a1 Prupe.6G037800_v2.0.a1
pyrus_communis	pycom03g03650 pycom11g03960
rosa_chinensis	RchiOBHm_Chr5g0074011
rosa_laevigata	RLG00000036439
rosa_multiflora	Rmu_co8251059.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007370
rosa_rugosa	Rorug05G0428300 Rorug05G0428300
rosa_samantha	Rh5AG485600 Rh5BG505800 Rh5CG529500 Rh5DG518500
rosa_wichuraiana	Rw5G045070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	375
AccBSI	CCGCTC	1 cut(s)	460
AccI	GTMKAC	1 cut(s)	333
AclWI	GGATC	1 cut(s)	784
AfaI	GTAC	3 cut(s)	5, 316, 389
AfiI	CCNNNNNNNGG	1 cut(s)	753
AgsI	TTSAA	1 cut(s)	650
AjnI	CCWGG	3 cut(s)	100, 441, 772
AluBI	AGCT	5 cut(s)	255, 346, 351, 616, 653
AluI	AGCT	5 cut(s)	255, 346, 351, 616, 653
Alw26I	GTCTC	1 cut(s)	613
AlwI	GGATC	1 cut(s)	784
AoxI	GGCC	2 cut(s)	147, 563
ApeKI	GCWGC	2 cut(s)	255, 653
AspS9I	GGNCC	2 cut(s)	147, 593
AsuC2I	CCSGG	1 cut(s)	748
AvaII	GGWCC	1 cut(s)	593
BanII	GRGCYC	2 cut(s)	519, 762
BbsI	GAAGAC	1 cut(s)	79
BbvI	GCAGC	2 cut(s)	242, 640
BccI	CCATC	1 cut(s)	194
BceAI	ACGGC	4 cut(s)	104, 146, 314, 554
BcgI	CGANNNNNNTGC	2 cut(s)	400, 434
BciT130I	CCWGG	3 cut(s)	102, 443, 774
BcnI	CCSGG	1 cut(s)	748
BcoDI	GTCTC	1 cut(s)	613
BfaI	CTAG	2 cut(s)	38, 662
BfuAI	ACCTGC	1 cut(s)	375
BisI	GCNGC	9 cut(s)	150, 153, 156, 159, 256, 327, 461, 654, 710
BlpI	GCTNAGC	1 cut(s)	347
BlsI	GCNGC	9 cut(s)	151, 154, 157, 160, 257, 328, 462, 655, 711
Bme1390I	CCNGG	4 cut(s)	102, 443, 748, 774
Bme18I	GGWCC	1 cut(s)	593
BmgT120I	GGNCC	2 cut(s)	147, 593
BmiI	GGNNCC	1 cut(s)	759
BmrFI	CCNGG	4 cut(s)	102, 443, 748, 774
BpiI	GAAGAC	1 cut(s)	79
Bpu1102I	GCTNAGC	1 cut(s)	347
BpuMI	CCSGG	1 cut(s)	748
Bsa29I	ATCGAT	1 cut(s)	696
BsaJI	CCNNGG	2 cut(s)	120, 596
BsaXI	ACNNNNNCTCC	4 cut(s)	254, 284, 437, 467
Bsc4I	CCNNNNNNNGG	1 cut(s)	753
Bse1I	ACTGG	1 cut(s)	627
Bse3DI	GCAATG	1 cut(s)	117
BseBI	CCWGG	3 cut(s)	102, 443, 774
BseCI	ATCGAT	1 cut(s)	696
BseDI	CCNNGG	2 cut(s)	120, 596
BseGI	GGATG	1 cut(s)	201
BseLI	CCNNNNNNNGG	1 cut(s)	753
BseMI	GCAATG	1 cut(s)	117
BseMII	CTCAG	3 cut(s)	255, 361, 608
BseNI	ACTGG	1 cut(s)	627
BseRI	GAGGAG	6 cut(s)	120, 292, 295, 343, 446, 800
BseXI	GCAGC	2 cut(s)	242, 640
BseYI	CCCAGC	1 cut(s)	144
BshFI	GGCC	2 cut(s)	149, 565
BshVI	ATCGAT	1 cut(s)	696
BsiSI	CCGG	1 cut(s)	747
BslI	CCNNNNNNNGG	1 cut(s)	753
BsmAI	GTCTC	1 cut(s)	613
BsmI	GAATGC	1 cut(s)	412
BsnI	GGCC	2 cut(s)	149, 565
Bsp1286I	GDGCHC	2 cut(s)	519, 762
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	3 cut(s)	510, 693, 776
Bsp1720I	GCTNAGC	1 cut(s)	347
BspANI	GGCC	2 cut(s)	149, 565
BspCNI	CTCAG	3 cut(s)	254, 360, 609
BspDI	ATCGAT	1 cut(s)	696
BspLI	GGNNCC	1 cut(s)	759
BspMI	ACCTGC	1 cut(s)	375
BspPI	GGATC	1 cut(s)	784
BsrBI	CCGCTC	1 cut(s)	460
BsrDI	GCAATG	1 cut(s)	117
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	627
BssECI	CCNNGG	2 cut(s)	120, 596
BssMI	GATC	3 cut(s)	510, 693, 776
BssT1I	CCWWGG	1 cut(s)	596
Bst2UI	CCWGG	3 cut(s)	102, 443, 774
Bst6I	CTCTTC	1 cut(s)	237
BstAPI	GCANNNNNTGC	1 cut(s)	116
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	3 cut(s)	49, 142, 567
BstDEI	CTNAG	5 cut(s)	241, 347, 549, 617, 690
BstDSI	CCRYGG	1 cut(s)	120
BstF5I	GGATG	1 cut(s)	201
BstKTI	GATC	3 cut(s)	513, 696, 779
BstMAI	GTCTC	1 cut(s)	613
BstMBI	GATC	3 cut(s)	510, 693, 776
BstMWI	GCNNNNNNNGC	5 cut(s)	53, 116, 146, 155, 158
BstNI	CCWGG	3 cut(s)	102, 443, 774
BstNSI	RCATGY	1 cut(s)	144
BstSCI	CCNGG	4 cut(s)	100, 441, 746, 772
BstV1I	GCAGC	2 cut(s)	242, 640
BstV2I	GAAGAC	1 cut(s)	79
BstXI	CCANNNNNNTGG	1 cut(s)	526
Bsu15I	ATCGAT	1 cut(s)	696
BsuRI	GGCC	2 cut(s)	149, 565
BsuTUI	ATCGAT	1 cut(s)	696
BtgI	CCRYGG	1 cut(s)	120
BtsCI	GGATG	1 cut(s)	201
BveI	ACCTGC	1 cut(s)	375
Cac8I	GCNNGC	3 cut(s)	49, 142, 567
Cfr13I	GGNCC	2 cut(s)	147, 593
ClaI	ATCGAT	1 cut(s)	696
Csp6I	GTAC	3 cut(s)	4, 315, 388
CviAII	CATG	1 cut(s)	141
CviQI	GTAC	3 cut(s)	4, 315, 388
DdeI	CTNAG	5 cut(s)	241, 347, 549, 617, 690
DpnI	GATC	3 cut(s)	512, 695, 778
DpnII	GATC	3 cut(s)	510, 693, 776
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
EciI	GGCGGA	1 cut(s)	352
Eco130I	CCWWGG	1 cut(s)	596
Eco147I	AGGCCT	1 cut(s)	565
Eco24I	GRGCYC	2 cut(s)	519, 762
Eco47I	GGWCC	1 cut(s)	593
EcoRII	CCWGG	3 cut(s)	100, 441, 772
EcoT14I	CCWWGG	1 cut(s)	596
EcoT38I	GRGCYC	2 cut(s)	519, 762
ErhI	CCWWGG	1 cut(s)	596
FaeI	CATG	1 cut(s)	144
FaiI	YATR	9 cut(s)	20, 25, 32, 63, 142, 419, 474, 611, 741
FalI	AAGNNNNNCTT	2 cut(s)	35, 67
FatI	CATG	1 cut(s)	140
FblI	GTMKAC	1 cut(s)	333
Fnu4HI	GCNGC	9 cut(s)	150, 153, 156, 159, 256, 327, 461, 654, 710
FokI	GGATG	1 cut(s)	188
FriOI	GRGCYC	2 cut(s)	519, 762
Fsp4HI	GCNGC	9 cut(s)	150, 153, 156, 159, 256, 327, 461, 654, 710
FspBI	CTAG	2 cut(s)	38, 662
GluI	GCNGC	9 cut(s)	150, 153, 156, 159, 256, 327, 461, 654, 710
GsaI	CCCAGC	1 cut(s)	148
HaeIII	GGCC	2 cut(s)	149, 565
HapII	CCGG	1 cut(s)	747
Hin1II	CATG	1 cut(s)	144
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HinfI	GANTC	3 cut(s)	335, 359, 743
HpaII	CCGG	1 cut(s)	747
Hpy166II	GTNNAC	2 cut(s)	6, 334
Hpy188I	TCNGA	3 cut(s)	206, 340, 358
Hpy188III	TCNNGA	1 cut(s)	662
Hpy8I	GTNNAC	2 cut(s)	6, 334
Hpy99I	CGWCG	1 cut(s)	335
HpyAV	CCTTC	4 cut(s)	62, 283, 555, 772
HpyCH4IV	ACGT	1 cut(s)	605
HpyCH4V	TGCA	2 cut(s)	258, 656
HpyF10VI	GCNNNNNNNGC	5 cut(s)	53, 116, 146, 155, 158
HpyF3I	CTNAG	5 cut(s)	241, 347, 549, 617, 690
HpySE526I	ACGT	1 cut(s)	605
Hsp92II	CATG	1 cut(s)	144
Kzo9I	GATC	3 cut(s)	510, 693, 776
LmnI	GCTCC	5 cut(s)	107, 356, 433, 445, 757
Lsp1109I	GCAGC	2 cut(s)	242, 640
MaeI	CTAG	2 cut(s)	38, 662
MaeII	ACGT	1 cut(s)	605
MalI	GATC	3 cut(s)	512, 695, 778
MbiI	CCGCTC	1 cut(s)	460
MboI	GATC	3 cut(s)	510, 693, 776
MboII	GAAGA	8 cut(s)	84, 101, 104, 107, 224, 259, 493, 677
MfeI	CAATTG	1 cut(s)	449
MhlI	GDGCHC	2 cut(s)	519, 762
MluCI	AATT	2 cut(s)	247, 449
MlyI	GAGTC	1 cut(s)	329
MmeI	TCCRAC	2 cut(s)	363, 710
MspA1I	CMGCKG	1 cut(s)	255
MspI	CCGG	1 cut(s)	747
MspR9I	CCNGG	4 cut(s)	102, 443, 748, 774
MunI	CAATTG	1 cut(s)	449
Mva1269I	GAATGC	1 cut(s)	412
MvaI	CCWGG	3 cut(s)	102, 443, 774
MwoI	GCNNNNNNNGC	5 cut(s)	53, 116, 146, 155, 158
NciI	CCSGG	1 cut(s)	748
NdeII	GATC	3 cut(s)	510, 693, 776
NlaIII	CATG	1 cut(s)	144
NlaIV	GGNNCC	1 cut(s)	759
NmeAIII	GCCGAG	1 cut(s)	405
NspI	RCATGY	1 cut(s)	144
PaeI	GCATGC	1 cut(s)	144
PceI	AGGCCT	1 cut(s)	565
PcsI	WCGNNNNNNNCGW	1 cut(s)	330
PctI	GAATGC	1 cut(s)	412
PfeI	GAWTC	2 cut(s)	359, 743
PfoI	TCCNGGA	1 cut(s)	441
PkrI	GCNGC	9 cut(s)	151, 154, 157, 160, 257, 328, 462, 655, 711
PleI	GAGTC	1 cut(s)	329
PpsI	GAGTC	1 cut(s)	329
Psp6I	CCWGG	3 cut(s)	100, 441, 772
PspFI	CCCAGC	1 cut(s)	144
PspGI	CCWGG	3 cut(s)	100, 441, 772
PspN4I	GGNNCC	1 cut(s)	759
PspPI	GGNCC	2 cut(s)	147, 593
PvuII	CAGCTG	1 cut(s)	255
RsaI	GTAC	3 cut(s)	5, 316, 389
RsaNI	GTAC	3 cut(s)	4, 315, 388
SalI	GTCGAC	1 cut(s)	332
SatI	GCNGC	9 cut(s)	150, 153, 156, 159, 256, 327, 461, 654, 710
Sau3AI	GATC	3 cut(s)	510, 693, 776
Sau96I	GGNCC	2 cut(s)	147, 593
SchI	GAGTC	1 cut(s)	329
ScrFI	CCNGG	4 cut(s)	102, 443, 748, 774
SduI	GDGCHC	2 cut(s)	519, 762
SinI	GGWCC	1 cut(s)	593
SphI	GCATGC	1 cut(s)	144
Sse9I	AATT	2 cut(s)	247, 449
SseBI	AGGCCT	1 cut(s)	565
SspMI	CTAG	2 cut(s)	38, 662
StuI	AGGCCT	1 cut(s)	565
StyD4I	CCNGG	4 cut(s)	100, 441, 746, 772
StyI	CCWWGG	1 cut(s)	596
TaiI	ACGT	1 cut(s)	608
TaqI	TCGA	8 cut(s)	66, 170, 333, 423, 466, 513, 584, 696
TaqII	GACCGA	1 cut(s)	122
TasI	AATT	2 cut(s)	247, 449
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	7 cut(s)	152, 155, 158, 161, 329, 463, 712
TfiI	GAWTC	2 cut(s)	359, 743
TseI	GCWGC	2 cut(s)	255, 653
TspDTI	ATGAA	2 cut(s)	626, 756
TspGWI	ACGGA	3 cut(s)	298, 302, 606
VpaK11BI	GGWCC	1 cut(s)	593
XbaI	TCTAGA	1 cut(s)	661
XceI	RCATGY	1 cut(s)	144
XmiI	GTMKAC	1 cut(s)	333
XspI	CTAG	2 cut(s)	38, 662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.