Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8251059.1

Orthogroup ID

OG0010918

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 617

Gene Structure 617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8251059.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 476 bp

atggcagccactctcattcagagatgctgggctgctcccggcgccaagctccacccgacgccccaaaccctgacccgaaacccgaagcccaaatcattatctcttccactctcagctaactccacctgcagcctcttctccttcactcctcccccctcaccaaccttcaccaaatcctcctcctcctcctccgtccgtaccgccgtcgccgccgtcgagtctgaccagctcagctccgccgaaaagaaaccgagcaggtactactttgttgtggccaatgccaagttcatgctcgatgaggaggagcatttccaggagcaactgttcgagcggcttcgattgtttcaagagaggaacaacgagcaggacttttggcttgtgatcgagcccaagttcttggataagtttcctgacattactagaagattaggcaggcctgctgtggctctggtctccactaatggcccttggattac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ycf54

Protein Analysis

159

Amino Acids

17.89

Weight (kDa)

9.26

Isoelectric Point (pI)

51.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58250
fragaria_vesca	FvH4_3g41200
malus_domestica	MD03G1046500.v1.1 MD11G1049300.v1.1
prunus_persica	Prupe.6G037800_v2.0.a1 Prupe.6G037800_v2.0.a1 Prupe.6G037800_v2.0.a1
pyrus_communis	pycom03g03650 pycom11g03960
rosa_chinensis	RchiOBHm_Chr5g0074011
rosa_laevigata	RLG00000036439
rosa_multiflora	Rmu_co8251059.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007370
rosa_rugosa	Rorug05G0428300 Rorug05G0428300
rosa_samantha	Rh5AG485600 Rh5BG505800 Rh5CG529500 Rh5DG518500
rosa_wichuraiana	Rw5G045070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	134
Acc36I	ACCTGC	2 cut(s)	134, 246
AccB1I	GGYRCC	1 cut(s)	41
AccBSI	CCGCTC	1 cut(s)	331
AciI	CCGC	4 cut(s)	201, 210, 237, 331
AcoI	YGGCCR	1 cut(s)	273
AcyI	GRCGYC	2 cut(s)	42, 59
AfaI	GTAC	2 cut(s)	199, 260
AgsI	TTSAA	1 cut(s)	347
AjnI	CCWGG	1 cut(s)	312
AjuI	GAANNNNNNNTTGG	2 cut(s)	269, 301
AloI	GAACNNNNNNTCC	2 cut(s)	308, 340
AluBI	AGCT	4 cut(s)	49, 116, 229, 234
AluI	AGCT	4 cut(s)	49, 116, 229, 234
Alw26I	GTCTC	1 cut(s)	457
AoxI	GGCC	3 cut(s)	273, 434, 463
ApeKI	GCWGC	3 cut(s)	5, 32, 129
AspLEI	GCGC	1 cut(s)	44
AspS9I	GGNCC	1 cut(s)	464
AsuC2I	CCSGG	1 cut(s)	39
AsuHPI	GGTGA	2 cut(s)	150, 160
BalI	TGGCCA	1 cut(s)	275
BanI	GGYRCC	1 cut(s)	41
BanII	GRGCYC	1 cut(s)	390
BbvI	GCAGC	3 cut(s)	17, 19, 141
BceAI	ACGGC	2 cut(s)	188, 197
BciT130I	CCWGG	1 cut(s)	314
BcnI	CCSGG	1 cut(s)	39
BcoDI	GTCTC	1 cut(s)	457
BfaI	CTAG	1 cut(s)	420
BfmI	CTRYAG	1 cut(s)	127
BfoI	RGCGCY	1 cut(s)	45
BfuAI	ACCTGC	2 cut(s)	134, 246
BisI	GCNGC	5 cut(s)	6, 33, 130, 210, 332
BlpI	GCTNAGC	1 cut(s)	230
BlsI	GCNGC	5 cut(s)	7, 34, 131, 211, 333
Bme1390I	CCNGG	2 cut(s)	39, 314
BmgT120I	GGNCC	1 cut(s)	464
BmiI	GGNNCC	1 cut(s)	43
BmrFI	CCNGG	2 cut(s)	39, 314
BmsI	GCATC	1 cut(s)	14
Bpu1102I	GCTNAGC	1 cut(s)	230
BpuMI	CCSGG	1 cut(s)	39
BsaHI	GRCGYC	2 cut(s)	42, 59
BsaI	GGTCTC	1 cut(s)	457
BsaJI	CCNNGG	1 cut(s)	467
BsaXI	ACNNNNNCTCC	2 cut(s)	308, 338
BseBI	CCWGG	1 cut(s)	314
BseDI	CCNNGG	1 cut(s)	467
BseMII	CTCAG	2 cut(s)	126, 244
BseRI	GAGGAG	7 cut(s)	138, 169, 172, 175, 178, 314, 317
BseXI	GCAGC	3 cut(s)	17, 19, 141
BseYI	CCCAGC	1 cut(s)	27
BshFI	GGCC	3 cut(s)	275, 436, 465
BshNI	GGYRCC	1 cut(s)	41
BsiSI	CCGG	1 cut(s)	39
BsmAI	GTCTC	1 cut(s)	457
BsnI	GGCC	3 cut(s)	275, 436, 465
Bso31I	GGTCTC	1 cut(s)	457
Bsp1286I	GDGCHC	1 cut(s)	390
Bsp143I	GATC	1 cut(s)	381
Bsp1720I	GCTNAGC	1 cut(s)	230
BspACI	CCGC	4 cut(s)	201, 210, 237, 331
BspANI	GGCC	3 cut(s)	275, 436, 465
BspCNI	CTCAG	2 cut(s)	125, 243
BspLI	GGNNCC	1 cut(s)	43
BspMAI	CTGCAG	1 cut(s)	131
BspMI	ACCTGC	2 cut(s)	134, 246
BspT107I	GGYRCC	1 cut(s)	41
BspTNI	GGTCTC	1 cut(s)	457
BsrBI	CCGCTC	1 cut(s)	331
BssECI	CCNNGG	1 cut(s)	467
BssMI	GATC	1 cut(s)	381
BssNI	GRCGYC	2 cut(s)	42, 59
BssT1I	CCWWGG	1 cut(s)	467
Bst2UI	CCWGG	1 cut(s)	314
Bst4CI	ACNGT	1 cut(s)	324
Bst6I	CTCTTC	2 cut(s)	108, 140
BstACI	GRCGYC	2 cut(s)	42, 59
BstC8I	GCNNGC	2 cut(s)	434, 438
BstDEI	CTNAG	2 cut(s)	112, 230
BstH2I	RGCGCY	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	44
BstKTI	GATC	1 cut(s)	384
BstMAI	GTCTC	1 cut(s)	457
BstMBI	GATC	1 cut(s)	381
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 209
BstNI	CCWGG	1 cut(s)	314
BstSCI	CCNGG	2 cut(s)	37, 312
BstSFI	CTRYAG	1 cut(s)	127
BstV1I	GCAGC	3 cut(s)	17, 19, 141
BstXI	CCANNNNNNTGG	1 cut(s)	397
BsuRI	GGCC	3 cut(s)	275, 436, 465
BveI	ACCTGC	2 cut(s)	134, 246
Cac8I	GCNNGC	2 cut(s)	434, 438
CfoI	GCGC	1 cut(s)	44
Cfr13I	GGNCC	1 cut(s)	464
CseI	GACGC	1 cut(s)	67
Csp6I	GTAC	2 cut(s)	198, 259
CviAII	CATG	1 cut(s)	289
CviQI	GTAC	2 cut(s)	198, 259
DdeI	CTNAG	2 cut(s)	112, 230
DinI	GGCGCC	1 cut(s)	43
DpnI	GATC	1 cut(s)	383
DpnII	GATC	1 cut(s)	381
EaeI	YGGCCR	1 cut(s)	273
Eam1104I	CTCTTC	2 cut(s)	108, 140
EarI	CTCTTC	2 cut(s)	108, 140
EciI	GGCGGA	1 cut(s)	226
Eco130I	CCWWGG	1 cut(s)	467
Eco147I	AGGCCT	1 cut(s)	436
Eco24I	GRGCYC	1 cut(s)	390
Eco31I	GGTCTC	1 cut(s)	457
EcoRII	CCWGG	1 cut(s)	312
EcoT14I	CCWWGG	1 cut(s)	467
EcoT38I	GRGCYC	1 cut(s)	390
EgeI	GGCGCC	1 cut(s)	43
EheI	GGCGCC	1 cut(s)	43
ErhI	CCWWGG	1 cut(s)	467
FaeI	CATG	1 cut(s)	292
FaiI	YATR	1 cut(s)	290
FatI	CATG	1 cut(s)	288
Fnu4HI	GCNGC	5 cut(s)	6, 33, 130, 210, 332
FriOI	GRGCYC	1 cut(s)	390
Fsp4HI	GCNGC	5 cut(s)	6, 33, 130, 210, 332
FspBI	CTAG	1 cut(s)	420
GlaI	GCGC	1 cut(s)	43
GluI	GCNGC	5 cut(s)	6, 33, 130, 210, 332
GsaI	CCCAGC	1 cut(s)	31
HaeII	RGCGCY	1 cut(s)	45
HaeIII	GGCC	3 cut(s)	275, 436, 465
HapII	CCGG	1 cut(s)	39
HgaI	GACGC	1 cut(s)	67
HhaI	GCGC	1 cut(s)	44
Hin1I	GRCGYC	2 cut(s)	42, 59
Hin1II	CATG	1 cut(s)	292
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HinfI	GANTC	1 cut(s)	218
HpaII	CCGG	1 cut(s)	39
HphI	GGTGA	2 cut(s)	150, 160
Hpy188I	TCNGA	2 cut(s)	21, 223
Hpy188III	TCNNGA	2 cut(s)	347, 410
Hpy99I	CGWCG	3 cut(s)	61, 209, 218
HpyAV	CCTTC	2 cut(s)	151, 175
HpyCH4III	ACNGT	1 cut(s)	324
HpyCH4V	TGCA	1 cut(s)	129
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 209
HpyF3I	CTNAG	2 cut(s)	112, 230
Hsp92I	GRCGYC	2 cut(s)	42, 59
Hsp92II	CATG	1 cut(s)	292
HspAI	GCGC	1 cut(s)	42
KasI	GGCGCC	1 cut(s)	41
Kzo9I	GATC	1 cut(s)	381
LmnI	GCTCC	5 cut(s)	40, 54, 239, 304, 316
Lsp1109I	GCAGC	3 cut(s)	17, 19, 141
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	1 cut(s)	420
MalI	GATC	1 cut(s)	383
MbiI	CCGCTC	1 cut(s)	331
MboI	GATC	1 cut(s)	381
MboII	GAAGA	3 cut(s)	95, 127, 435
MhlI	GDGCHC	1 cut(s)	390
MlsI	TGGCCA	1 cut(s)	275
MluNI	TGGCCA	1 cut(s)	275
Mly113I	GGCGCC	1 cut(s)	42
MlyI	GAGTC	1 cut(s)	227
Mox20I	TGGCCA	1 cut(s)	275
MscI	TGGCCA	1 cut(s)	275
Msp20I	TGGCCA	1 cut(s)	275
MspI	CCGG	1 cut(s)	39
MspR9I	CCNGG	2 cut(s)	39, 314
MvaI	CCWGG	1 cut(s)	314
MwoI	GCNNNNNNNGC	2 cut(s)	41, 209
NarI	GGCGCC	1 cut(s)	42
NciI	CCSGG	1 cut(s)	39
NdeII	GATC	1 cut(s)	381
NlaIII	CATG	1 cut(s)	292
NlaIV	GGNNCC	1 cut(s)	43
PaqCI	CACCTGC	1 cut(s)	134
PceI	AGGCCT	1 cut(s)	436
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PfoI	TCCNGGA	1 cut(s)	312
PkrI	GCNGC	5 cut(s)	7, 34, 131, 211, 333
PleI	GAGTC	1 cut(s)	226
PluTI	GGCGCC	1 cut(s)	45
PpsI	GAGTC	1 cut(s)	226
Psp6I	CCWGG	1 cut(s)	312
PspFI	CCCAGC	1 cut(s)	27
PspGI	CCWGG	1 cut(s)	312
PspN4I	GGNNCC	1 cut(s)	43
PspPI	GGNCC	1 cut(s)	464
PstI	CTGCAG	1 cut(s)	131
RsaI	GTAC	2 cut(s)	199, 260
RsaNI	GTAC	2 cut(s)	198, 259
SatI	GCNGC	5 cut(s)	6, 33, 130, 210, 332
Sau3AI	GATC	1 cut(s)	381
Sau96I	GGNCC	1 cut(s)	464
SchI	GAGTC	1 cut(s)	227
ScrFI	CCNGG	2 cut(s)	39, 314
SduI	GDGCHC	1 cut(s)	390
SetI	ASST	7 cut(s)	51, 118, 128, 167, 231, 236, 260
SfaNI	GCATC	1 cut(s)	14
SfcI	CTRYAG	1 cut(s)	127
SfoI	GGCGCC	1 cut(s)	43
SseBI	AGGCCT	1 cut(s)	436
SsiI	CCGC	4 cut(s)	201, 210, 237, 331
SspDI	GGCGCC	1 cut(s)	41
SspMI	CTAG	1 cut(s)	420
StuI	AGGCCT	1 cut(s)	436
StyD4I	CCNGG	2 cut(s)	37, 312
StyI	CCWWGG	1 cut(s)	467
TaaI	ACNGT	1 cut(s)	324
TaqI	TCGA	5 cut(s)	216, 294, 327, 337, 384
TauI	GCSGC	2 cut(s)	212, 334
TseI	GCWGC	3 cut(s)	5, 32, 129
TspDTI	ATGAA	1 cut(s)	277
TspGWI	ACGGA	2 cut(s)	181, 185
XspI	CTAG	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.