Rroxscaffold_1G00007370

Protein of unknown function (DUF2488)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0010918
Physical Location & Seq
Forward (+)
9416617 .. 9418370
1754 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00007370.1

Sequence Viewer

Length: 660 bp
ATGGCAGCAACTCTCACTCAGAGATGCTGGGCTGCTCCCGGCGTCAAGCTCAACCCGACGCCCCAAACCCTGACCCGAAACCCGAAACCCAAATCATTATCTCTACCACTCTCAGCTAACTCCACCTGCAGCCTCTTCTGCTTCACTCCTCCGTCACCAACCTTCACCAAATCCTCCTCCTCCTCCGTCCGTACCGCCGTCGAGTCTGACCAGCTCAGCTCCGCAGAAAAGCAGAAACCGAGCAGGTACTACTTTGTTGTGGCCAATGCCAAGTTCATGCTCGATGAGGAGGAGCATTTCCAGGAGCAACTGTTCGAGCGGCTTCGATTGTTTAAAGAGAGGAACAACGAGCAGGACTTTTGGCTTGTGATCGAGCCCAAGTTCTTGGATAAGTTTCCTGACATTACTAGAAGATTAGGCAGGCCTGCTGTGGCTCTGGTCTCCACTAATGGCCCTTGGATTACATTTATGAAGCTGAGATTGGACCGAGTATTGTCAGAAAGTTTTGAAGCTGAGAGTCTAGAAGAAGCATTAGCCTGCAGTCCAACAAATATTGAGTTCAAGAAGCCAGATAAATGGGTAGCACCATACCCCAAGTATGAATCTGAGTGGTGGGGGCCCTTCTTGCCCCCAGGATCGAAAGAGGAGGCCAAAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ycf54

Protein Analysis

219

Amino Acids

25.02

Weight (kDa)

8.29

Isoelectric Point (pI)

52.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ycf54 PF10674 82 - 171 4.4e-34 Ycf54 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 134
Acc36I ACCTGC 2 cut(s) 134, 234
AccBSI CCGCTC 1 cut(s) 319
AciI CCGC 3 cut(s) 195, 222, 319
AclWI GGATC 1 cut(s) 643
AcoI YGGCCR 1 cut(s) 261
AcyI GRCGYC 2 cut(s) 42, 59
AfaI GTAC 2 cut(s) 193, 248
AgsI TTSAA 2 cut(s) 509, 562
AjnI CCWGG 2 cut(s) 300, 631
AjuI GAANNNNNNNTTGG 4 cut(s) 257, 289, 464, 496
AloI GAACNNNNNNTCC 2 cut(s) 296, 328
AluBI AGCT 6 cut(s) 49, 116, 214, 219, 475, 512
AluI AGCT 6 cut(s) 49, 116, 214, 219, 475, 512
Alw26I GTCTC 1 cut(s) 445
AlwI GGATC 1 cut(s) 643
AoxI GGCC 5 cut(s) 261, 422, 451, 617, 648
ApaI GGGCCC 1 cut(s) 621
ApeKI GCWGC 3 cut(s) 5, 32, 129
AspS9I GGNCC 4 cut(s) 452, 484, 617, 618
AsuC2I CCSGG 1 cut(s) 39
AsuHPI GGTGA 2 cut(s) 147, 157
AvaII GGWCC 1 cut(s) 484
BaeGI GKGCMC 1 cut(s) 621
BalI TGGCCA 1 cut(s) 263
BanII GRGCYC 2 cut(s) 378, 621
BbvI GCAGC 3 cut(s) 17, 19, 141
BceAI ACGGC 1 cut(s) 182
BciT130I CCWGG 2 cut(s) 302, 633
BcnI CCSGG 1 cut(s) 39
BcoDI GTCTC 1 cut(s) 445
BfaI CTAG 2 cut(s) 408, 521
BfmI CTRYAG 2 cut(s) 127, 538
BfuAI ACCTGC 2 cut(s) 134, 234
BisI GCNGC 4 cut(s) 6, 33, 130, 320
BlpI GCTNAGC 1 cut(s) 215
BlsI GCNGC 4 cut(s) 7, 34, 131, 321
Bme1390I CCNGG 3 cut(s) 39, 302, 633
Bme18I GGWCC 1 cut(s) 484
BmgT120I GGNCC 4 cut(s) 452, 484, 617, 618
BmiI GGNNCC 2 cut(s) 618, 619
BmrFI CCNGG 3 cut(s) 39, 302, 633
BmsI GCATC 1 cut(s) 14
Bpu1102I GCTNAGC 1 cut(s) 215
BpuMI CCSGG 1 cut(s) 39
BsaHI GRCGYC 2 cut(s) 42, 59
BsaI GGTCTC 1 cut(s) 445
BsaJI CCNNGG 2 cut(s) 455, 631
BsaXI ACNNNNNCTCC 2 cut(s) 296, 326
BseBI CCWGG 2 cut(s) 302, 633
BseDI CCNNGG 2 cut(s) 455, 631
BseMII CTCAG 6 cut(s) 32, 126, 229, 467, 504, 597
BseRI GAGGAG 7 cut(s) 138, 166, 169, 172, 302, 305, 659
BseSI GKGCMC 1 cut(s) 621
BseXI GCAGC 3 cut(s) 17, 19, 141
BseYI CCCAGC 1 cut(s) 27
BshFI GGCC 5 cut(s) 263, 424, 453, 619, 650
BsiSI CCGG 1 cut(s) 39
BsmAI GTCTC 1 cut(s) 445
BsnI GGCC 5 cut(s) 263, 424, 453, 619, 650
Bso31I GGTCTC 1 cut(s) 445
Bsp120I GGGCCC 1 cut(s) 617
Bsp1286I GDGCHC 2 cut(s) 378, 621
Bsp143I GATC 2 cut(s) 369, 635
Bsp1720I GCTNAGC 1 cut(s) 215
BspACI CCGC 3 cut(s) 195, 222, 319
BspANI GGCC 5 cut(s) 263, 424, 453, 619, 650
BspCNI CTCAG 6 cut(s) 31, 125, 228, 468, 505, 598
BspLI GGNNCC 2 cut(s) 618, 619
BspMAI CTGCAG 2 cut(s) 131, 542
BspMI ACCTGC 2 cut(s) 134, 234
BspPI GGATC 1 cut(s) 643
BspTNI GGTCTC 1 cut(s) 445
BsrBI CCGCTC 1 cut(s) 319
BssECI CCNNGG 2 cut(s) 455, 631
BssMI GATC 2 cut(s) 369, 635
BssNI GRCGYC 2 cut(s) 42, 59
BssT1I CCWWGG 1 cut(s) 455
Bst2UI CCWGG 2 cut(s) 302, 633
Bst4CI ACNGT 1 cut(s) 312
Bst6I CTCTTC 1 cut(s) 140
BstACI GRCGYC 2 cut(s) 42, 59
BstC8I GCNNGC 3 cut(s) 422, 426, 538
BstDEI CTNAG 6 cut(s) 18, 112, 215, 476, 513, 606
BstKTI GATC 2 cut(s) 372, 638
BstMAI GTCTC 1 cut(s) 445
BstMBI GATC 2 cut(s) 369, 635
BstMWI GCNNNNNNNGC 2 cut(s) 138, 625
BstNI CCWGG 2 cut(s) 302, 633
BstSCI CCNGG 3 cut(s) 37, 300, 631
BstSFI CTRYAG 2 cut(s) 127, 538
BstSLI GKGCMC 1 cut(s) 621
BstV1I GCAGC 3 cut(s) 17, 19, 141
BstXI CCANNNNNNTGG 2 cut(s) 385, 576
BsuRI GGCC 5 cut(s) 263, 424, 453, 619, 650
BveI ACCTGC 2 cut(s) 134, 234
Cac8I GCNNGC 3 cut(s) 422, 426, 538
Cfr13I GGNCC 4 cut(s) 452, 484, 617, 618
CseI GACGC 2 cut(s) 31, 67
Csp6I GTAC 2 cut(s) 192, 247
CviAII CATG 1 cut(s) 277
CviQI GTAC 2 cut(s) 192, 247
DdeI CTNAG 6 cut(s) 18, 112, 215, 476, 513, 606
DpnI GATC 2 cut(s) 371, 637
DpnII GATC 2 cut(s) 369, 635
DraI TTTAAA 1 cut(s) 334
EaeI YGGCCR 1 cut(s) 261
Eam1104I CTCTTC 1 cut(s) 140
EarI CTCTTC 1 cut(s) 140
Eco130I CCWWGG 1 cut(s) 455
Eco147I AGGCCT 1 cut(s) 424
Eco24I GRGCYC 2 cut(s) 378, 621
Eco31I GGTCTC 1 cut(s) 445
Eco47I GGWCC 1 cut(s) 484
EcoO109I RGGNCCY 2 cut(s) 617, 618
EcoRII CCWGG 2 cut(s) 300, 631
EcoT14I CCWWGG 1 cut(s) 455
EcoT38I GRGCYC 2 cut(s) 378, 621
ErhI CCWWGG 1 cut(s) 455
FaeI CATG 1 cut(s) 280
FaiI YATR 4 cut(s) 278, 470, 589, 600
FatI CATG 1 cut(s) 276
Fnu4HI GCNGC 4 cut(s) 6, 33, 130, 320
FriOI GRGCYC 2 cut(s) 378, 621
Fsp4HI GCNGC 4 cut(s) 6, 33, 130, 320
FspBI CTAG 2 cut(s) 408, 521
GluI GCNGC 4 cut(s) 6, 33, 130, 320
GsaI CCCAGC 1 cut(s) 31
HaeIII GGCC 5 cut(s) 263, 424, 453, 619, 650
HapII CCGG 1 cut(s) 39
HgaI GACGC 2 cut(s) 31, 67
Hin1I GRCGYC 2 cut(s) 42, 59
Hin1II CATG 1 cut(s) 280
HinfI GANTC 3 cut(s) 203, 517, 602
HpaII CCGG 1 cut(s) 39
HphI GGTGA 2 cut(s) 147, 157
Hpy188I TCNGA 4 cut(s) 21, 208, 499, 607
Hpy188III TCNNGA 3 cut(s) 398, 521, 562
Hpy99I CGWCG 2 cut(s) 61, 203
HpyAV CCTTC 2 cut(s) 172, 631
HpyCH4III ACNGT 1 cut(s) 312
HpyCH4V TGCA 2 cut(s) 129, 540
HpyF10VI GCNNNNNNNGC 2 cut(s) 138, 625
HpyF3I CTNAG 6 cut(s) 18, 112, 215, 476, 513, 606
Hsp92I GRCGYC 2 cut(s) 42, 59
Hsp92II CATG 1 cut(s) 280
Kzo9I GATC 2 cut(s) 369, 635
LmnI GCTCC 4 cut(s) 40, 224, 292, 304
Lsp1109I GCAGC 3 cut(s) 17, 19, 141
LweI GCATC 1 cut(s) 14
MaeI CTAG 2 cut(s) 408, 521
MaeIII GTNAC 1 cut(s) 153
MalI GATC 2 cut(s) 371, 637
MbiI CCGCTC 1 cut(s) 319
MboI GATC 2 cut(s) 369, 635
MboII GAAGA 3 cut(s) 127, 423, 536
MhlI GDGCHC 2 cut(s) 378, 621
MlsI TGGCCA 1 cut(s) 263
MluNI TGGCCA 1 cut(s) 263
MlyI GAGTC 2 cut(s) 212, 526
MmeI TCCRAC 1 cut(s) 569
Mox20I TGGCCA 1 cut(s) 263
MscI TGGCCA 1 cut(s) 263
MseI TTAA 1 cut(s) 333
Msp20I TGGCCA 1 cut(s) 263
MspI CCGG 1 cut(s) 39
MspR9I CCNGG 3 cut(s) 39, 302, 633
MvaI CCWGG 2 cut(s) 302, 633
MwoI GCNNNNNNNGC 2 cut(s) 138, 625
NciI CCSGG 1 cut(s) 39
NdeII GATC 2 cut(s) 369, 635
NlaIII CATG 1 cut(s) 280
NlaIV GGNNCC 2 cut(s) 618, 619
NmuCI GTSAC 1 cut(s) 153
PaqCI CACCTGC 1 cut(s) 134
PceI AGGCCT 1 cut(s) 424
PfeI GAWTC 1 cut(s) 602
PfoI TCCNGGA 1 cut(s) 300
PkrI GCNGC 4 cut(s) 7, 34, 131, 321
PleI GAGTC 2 cut(s) 211, 525
PpsI GAGTC 2 cut(s) 211, 525
Psp6I CCWGG 2 cut(s) 300, 631
PspFI CCCAGC 1 cut(s) 27
PspGI CCWGG 2 cut(s) 300, 631
PspN4I GGNNCC 2 cut(s) 618, 619
PspOMI GGGCCC 1 cut(s) 617
PspPI GGNCC 4 cut(s) 452, 484, 617, 618
PstI CTGCAG 2 cut(s) 131, 542
RsaI GTAC 2 cut(s) 193, 248
RsaNI GTAC 2 cut(s) 192, 247
SaqAI TTAA 1 cut(s) 333
SatI GCNGC 4 cut(s) 6, 33, 130, 320
Sau3AI GATC 2 cut(s) 369, 635
Sau96I GGNCC 4 cut(s) 452, 484, 617, 618
SchI GAGTC 2 cut(s) 212, 526
ScrFI CCNGG 3 cut(s) 39, 302, 633
SduI GDGCHC 2 cut(s) 378, 621
SetI ASST 9 cut(s) 51, 118, 128, 164, 216, 221, 248, 477, 514
SfaNI GCATC 1 cut(s) 14
SfcI CTRYAG 2 cut(s) 127, 538
SinI GGWCC 1 cut(s) 484
SseBI AGGCCT 1 cut(s) 424
SsiI CCGC 3 cut(s) 195, 222, 319
SspI AATATT 1 cut(s) 553
SspMI CTAG 2 cut(s) 408, 521
StuI AGGCCT 1 cut(s) 424
StyD4I CCNGG 3 cut(s) 37, 300, 631
StyI CCWWGG 1 cut(s) 455
TaaI ACNGT 1 cut(s) 312
TaqI TCGA 6 cut(s) 201, 282, 315, 325, 372, 638
TaqII GACCGA 1 cut(s) 501
TauI GCSGC 1 cut(s) 322
TfiI GAWTC 1 cut(s) 602
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TseFI GTSAC 1 cut(s) 153
TseI GCWGC 3 cut(s) 5, 32, 129
Tsp45I GTSAC 1 cut(s) 153
TspDTI ATGAA 3 cut(s) 265, 485, 615
TspGWI ACGGA 3 cut(s) 141, 175, 179
VpaK11BI GGWCC 1 cut(s) 484
XbaI TCTAGA 1 cut(s) 520
XspI CTAG 2 cut(s) 408, 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.