RchiOBHm_Chr5g0074011

Protein of unknown function (DUF2488)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0010918
Physical Location & Seq
Reverse (-)
80066278 .. 80068065
1788 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34885

Sequence Viewer

Length: 675 bp
ATGGCAGCAACTCTCACTCAGAGATGCTGGGCTGCTCCCGGCGTCAAGCTCAACCCGACGCCCCAAACCCTGACCCGAAACCCGAAACCCAAATCATTATCTCTTCCACTCTCAGCTAACTCCACCTGCAGCCTCTTCTCCTTCACTCCTCCTCCCTCACCAACCTTCACCAAATCCTCCTCCTCCTCCTCCTCCGTCCGTACCGCCGTCGCCGCCGTCGAGTCTGACCAGCTCAGCTCCGCCGAAAAGAAACCGAGCAGGTACTACTTTGTTGTGGCCAATGCCAAGTTCATGCTCGATGAGGAGGAGCATTTCCAGGAGCAACTGTTCGAGCGGCTTCGATTGTTTAAAGAGAGGAACAACGAGCAGGACTTTTGGCTTGTGATCGAGCCCAAGTTCTTGGACAAGTTTCCTGACATTACTAGAAGATTAGGCAGGCCTGCTGTGGCTCTGGTCTCCACTAATGGCCCTTGGATTACATTTATGAAGCTGAGATTGGACCGAGTATTGTCAGAAAGTTTTGAAGCTGAGAGTCTAGAGCAAGCATTAGCCTCCAGTCCAACAAATATTGAGTTCAAGAAGCCAGATAAATGGGTAGCACCATACCCCAAGTATGAATCTGAGTGGTGGGGGCCCTTCTTGCCCCCAGGATCGAAAGAGGAGGCCAAAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ycf54

Protein Analysis

224

Amino Acids

25.37

Weight (kDa)

8.8

Isoelectric Point (pI)

51.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ycf54 PF10674 87 - 176 4.6e-34 Ycf54 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 134
Acc36I ACCTGC 2 cut(s) 134, 249
AccBSI CCGCTC 1 cut(s) 334
AciI CCGC 4 cut(s) 204, 213, 240, 334
AclWI GGATC 1 cut(s) 658
AcoI YGGCCR 1 cut(s) 276
AcyI GRCGYC 2 cut(s) 42, 59
AfaI GTAC 2 cut(s) 202, 263
AgsI TTSAA 2 cut(s) 524, 577
AjnI CCWGG 2 cut(s) 315, 646
AjuI GAANNNNNNNTTGG 4 cut(s) 272, 304, 479, 511
AloI GAACNNNNNNTCC 2 cut(s) 311, 343
AluBI AGCT 6 cut(s) 49, 116, 232, 237, 490, 527
AluI AGCT 6 cut(s) 49, 116, 232, 237, 490, 527
Alw26I GTCTC 1 cut(s) 460
AlwI GGATC 1 cut(s) 658
AoxI GGCC 5 cut(s) 276, 437, 466, 632, 663
ApaI GGGCCC 1 cut(s) 636
ApeKI GCWGC 3 cut(s) 5, 32, 129
AspS9I GGNCC 4 cut(s) 467, 499, 632, 633
AsuC2I CCSGG 1 cut(s) 39
AsuHPI GGTGA 2 cut(s) 150, 160
AvaII GGWCC 1 cut(s) 499
BaeGI GKGCMC 1 cut(s) 636
BalI TGGCCA 1 cut(s) 278
BanII GRGCYC 2 cut(s) 393, 636
BbvI GCAGC 3 cut(s) 17, 19, 141
BceAI ACGGC 2 cut(s) 191, 200
BciT130I CCWGG 2 cut(s) 317, 648
BcnI CCSGG 1 cut(s) 39
BcoDI GTCTC 1 cut(s) 460
BfaI CTAG 2 cut(s) 423, 536
BfmI CTRYAG 1 cut(s) 127
BfuAI ACCTGC 2 cut(s) 134, 249
BisI GCNGC 5 cut(s) 6, 33, 130, 213, 335
BlpI GCTNAGC 1 cut(s) 233
BlsI GCNGC 5 cut(s) 7, 34, 131, 214, 336
Bme1390I CCNGG 3 cut(s) 39, 317, 648
Bme18I GGWCC 1 cut(s) 499
BmgT120I GGNCC 4 cut(s) 467, 499, 632, 633
BmiI GGNNCC 2 cut(s) 633, 634
BmrFI CCNGG 3 cut(s) 39, 317, 648
BmsI GCATC 1 cut(s) 14
BpmI CTGGAG 1 cut(s) 538
Bpu1102I GCTNAGC 1 cut(s) 233
BpuMI CCSGG 1 cut(s) 39
BsaHI GRCGYC 2 cut(s) 42, 59
BsaI GGTCTC 1 cut(s) 460
BsaJI CCNNGG 2 cut(s) 470, 646
BsaXI ACNNNNNCTCC 4 cut(s) 136, 166, 311, 341
Bse1I ACTGG 1 cut(s) 555
BseBI CCWGG 2 cut(s) 317, 648
BseDI CCNNGG 2 cut(s) 470, 646
BseMII CTCAG 6 cut(s) 32, 126, 247, 482, 519, 612
BseNI ACTGG 1 cut(s) 555
BseSI GKGCMC 1 cut(s) 636
BseXI GCAGC 3 cut(s) 17, 19, 141
BseYI CCCAGC 1 cut(s) 27
BshFI GGCC 5 cut(s) 278, 439, 468, 634, 665
BsiSI CCGG 1 cut(s) 39
BsmAI GTCTC 1 cut(s) 460
BsnI GGCC 5 cut(s) 278, 439, 468, 634, 665
Bso31I GGTCTC 1 cut(s) 460
Bsp120I GGGCCC 1 cut(s) 632
Bsp1286I GDGCHC 2 cut(s) 393, 636
Bsp143I GATC 2 cut(s) 384, 650
Bsp1720I GCTNAGC 1 cut(s) 233
BspACI CCGC 4 cut(s) 204, 213, 240, 334
BspANI GGCC 5 cut(s) 278, 439, 468, 634, 665
BspCNI CTCAG 6 cut(s) 31, 125, 246, 483, 520, 613
BspLI GGNNCC 2 cut(s) 633, 634
BspMAI CTGCAG 1 cut(s) 131
BspMI ACCTGC 2 cut(s) 134, 249
BspPI GGATC 1 cut(s) 658
BspTNI GGTCTC 1 cut(s) 460
BsrBI CCGCTC 1 cut(s) 334
BsrI ACTGG 1 cut(s) 555
BssECI CCNNGG 2 cut(s) 470, 646
BssMI GATC 2 cut(s) 384, 650
BssNI GRCGYC 2 cut(s) 42, 59
BssT1I CCWWGG 1 cut(s) 470
Bst2UI CCWGG 2 cut(s) 317, 648
Bst4CI ACNGT 1 cut(s) 327
Bst6I CTCTTC 2 cut(s) 108, 140
BstACI GRCGYC 2 cut(s) 42, 59
BstC8I GCNNGC 3 cut(s) 437, 441, 543
BstDEI CTNAG 6 cut(s) 18, 112, 233, 491, 528, 621
BstKTI GATC 2 cut(s) 387, 653
BstMAI GTCTC 1 cut(s) 460
BstMBI GATC 2 cut(s) 384, 650
BstMWI GCNNNNNNNGC 2 cut(s) 212, 640
BstNI CCWGG 2 cut(s) 317, 648
BstSCI CCNGG 3 cut(s) 37, 315, 646
BstSFI CTRYAG 1 cut(s) 127
BstSLI GKGCMC 1 cut(s) 636
BstV1I GCAGC 3 cut(s) 17, 19, 141
BstXI CCANNNNNNTGG 2 cut(s) 400, 591
BsuRI GGCC 5 cut(s) 278, 439, 468, 634, 665
BveI ACCTGC 2 cut(s) 134, 249
Cac8I GCNNGC 3 cut(s) 437, 441, 543
Cfr13I GGNCC 4 cut(s) 467, 499, 632, 633
CseI GACGC 2 cut(s) 31, 67
Csp6I GTAC 2 cut(s) 201, 262
CviAII CATG 1 cut(s) 292
CviQI GTAC 2 cut(s) 201, 262
DdeI CTNAG 6 cut(s) 18, 112, 233, 491, 528, 621
DpnI GATC 2 cut(s) 386, 652
DpnII GATC 2 cut(s) 384, 650
DraI TTTAAA 1 cut(s) 349
EaeI YGGCCR 1 cut(s) 276
Eam1104I CTCTTC 2 cut(s) 108, 140
EarI CTCTTC 2 cut(s) 108, 140
EciI GGCGGA 1 cut(s) 229
Eco130I CCWWGG 1 cut(s) 470
Eco147I AGGCCT 1 cut(s) 439
Eco24I GRGCYC 2 cut(s) 393, 636
Eco31I GGTCTC 1 cut(s) 460
Eco47I GGWCC 1 cut(s) 499
EcoO109I RGGNCCY 2 cut(s) 632, 633
EcoRII CCWGG 2 cut(s) 315, 646
EcoT14I CCWWGG 1 cut(s) 470
EcoT38I GRGCYC 2 cut(s) 393, 636
ErhI CCWWGG 1 cut(s) 470
FaeI CATG 1 cut(s) 295
FaiI YATR 4 cut(s) 293, 485, 604, 615
FatI CATG 1 cut(s) 291
Fnu4HI GCNGC 5 cut(s) 6, 33, 130, 213, 335
FriOI GRGCYC 2 cut(s) 393, 636
Fsp4HI GCNGC 5 cut(s) 6, 33, 130, 213, 335
FspBI CTAG 2 cut(s) 423, 536
GluI GCNGC 5 cut(s) 6, 33, 130, 213, 335
GsaI CCCAGC 1 cut(s) 31
GsuI CTGGAG 1 cut(s) 538
HaeIII GGCC 5 cut(s) 278, 439, 468, 634, 665
HapII CCGG 1 cut(s) 39
HgaI GACGC 2 cut(s) 31, 67
Hin1I GRCGYC 2 cut(s) 42, 59
Hin1II CATG 1 cut(s) 295
HinfI GANTC 3 cut(s) 221, 532, 617
HpaII CCGG 1 cut(s) 39
HphI GGTGA 2 cut(s) 150, 160
Hpy188I TCNGA 4 cut(s) 21, 226, 514, 622
Hpy188III TCNNGA 3 cut(s) 413, 536, 577
Hpy99I CGWCG 3 cut(s) 61, 212, 221
HpyAV CCTTC 3 cut(s) 151, 175, 646
HpyCH4III ACNGT 1 cut(s) 327
HpyCH4V TGCA 1 cut(s) 129
HpyF10VI GCNNNNNNNGC 2 cut(s) 212, 640
HpyF3I CTNAG 6 cut(s) 18, 112, 233, 491, 528, 621
Hsp92I GRCGYC 2 cut(s) 42, 59
Hsp92II CATG 1 cut(s) 295
Kzo9I GATC 2 cut(s) 384, 650
LmnI GCTCC 4 cut(s) 40, 242, 307, 319
Lsp1109I GCAGC 3 cut(s) 17, 19, 141
LweI GCATC 1 cut(s) 14
MaeI CTAG 2 cut(s) 423, 536
MalI GATC 2 cut(s) 386, 652
MbiI CCGCTC 1 cut(s) 334
MboI GATC 2 cut(s) 384, 650
MboII GAAGA 3 cut(s) 95, 127, 438
MhlI GDGCHC 2 cut(s) 393, 636
MlsI TGGCCA 1 cut(s) 278
MluNI TGGCCA 1 cut(s) 278
MlyI GAGTC 2 cut(s) 230, 541
MmeI TCCRAC 1 cut(s) 584
Mox20I TGGCCA 1 cut(s) 278
MscI TGGCCA 1 cut(s) 278
MseI TTAA 1 cut(s) 348
Msp20I TGGCCA 1 cut(s) 278
MspI CCGG 1 cut(s) 39
MspR9I CCNGG 3 cut(s) 39, 317, 648
MvaI CCWGG 2 cut(s) 317, 648
MwoI GCNNNNNNNGC 2 cut(s) 212, 640
NciI CCSGG 1 cut(s) 39
NdeII GATC 2 cut(s) 384, 650
NlaIII CATG 1 cut(s) 295
NlaIV GGNNCC 2 cut(s) 633, 634
PaqCI CACCTGC 1 cut(s) 134
PceI AGGCCT 1 cut(s) 439
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PfeI GAWTC 1 cut(s) 617
PfoI TCCNGGA 1 cut(s) 315
PkrI GCNGC 5 cut(s) 7, 34, 131, 214, 336
PleI GAGTC 2 cut(s) 229, 540
PpsI GAGTC 2 cut(s) 229, 540
Psp6I CCWGG 2 cut(s) 315, 646
PspFI CCCAGC 1 cut(s) 27
PspGI CCWGG 2 cut(s) 315, 646
PspN4I GGNNCC 2 cut(s) 633, 634
PspOMI GGGCCC 1 cut(s) 632
PspPI GGNCC 4 cut(s) 467, 499, 632, 633
PstI CTGCAG 1 cut(s) 131
RsaI GTAC 2 cut(s) 202, 263
RsaNI GTAC 2 cut(s) 201, 262
SaqAI TTAA 1 cut(s) 348
SatI GCNGC 5 cut(s) 6, 33, 130, 213, 335
Sau3AI GATC 2 cut(s) 384, 650
Sau96I GGNCC 4 cut(s) 467, 499, 632, 633
SchI GAGTC 2 cut(s) 230, 541
ScrFI CCNGG 3 cut(s) 39, 317, 648
SduI GDGCHC 2 cut(s) 393, 636
SetI ASST 9 cut(s) 51, 118, 128, 167, 234, 239, 263, 492, 529
SfaNI GCATC 1 cut(s) 14
SfcI CTRYAG 1 cut(s) 127
SinI GGWCC 1 cut(s) 499
SseBI AGGCCT 1 cut(s) 439
SsiI CCGC 4 cut(s) 204, 213, 240, 334
SspI AATATT 1 cut(s) 568
SspMI CTAG 2 cut(s) 423, 536
StuI AGGCCT 1 cut(s) 439
StyD4I CCNGG 3 cut(s) 37, 315, 646
StyI CCWWGG 1 cut(s) 470
TaaI ACNGT 1 cut(s) 327
TaqI TCGA 6 cut(s) 219, 297, 330, 340, 387, 653
TaqII GACCGA 1 cut(s) 516
TauI GCSGC 2 cut(s) 215, 337
TfiI GAWTC 1 cut(s) 617
Tru1I TTAA 1 cut(s) 348
Tru9I TTAA 1 cut(s) 348
TseI GCWGC 3 cut(s) 5, 32, 129
TspDTI ATGAA 3 cut(s) 280, 500, 630
TspGWI ACGGA 2 cut(s) 184, 188
VpaK11BI GGWCC 1 cut(s) 499
XbaI TCTAGA 1 cut(s) 535
XspI CTAG 2 cut(s) 423, 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.