Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005470

Physical Location & Seq

Genomic Coordinates Reverse (-)

10830965 .. 10837118

Gene Structure 6154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G135900.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGGGACCCTTCTCAGGGTTGAGTGCTTCTCCTTCCCAAGAACTCTCCCAATCCGTAATCGTTTACTTCCCAATAGAAATCCATCTGTCTCAGCCCTAAGAACAAGCCCACCTCCTGTGAGTGAACTTGCAGAAGAGGACATTCTGCAGGCGTTCTTTAAGGAAAGACAGTTGAATGGAGACCTTGTATCAAAAGTTTCAGATGTGTTTTGGCAGAAGGAATTTACGAAATCTGTTGTTGATGCTGATGATGTTGGCCGATTTGCTGACACTCCTCAACAAGCAGAGCAGGTTGCAGAAAATGATACTGGTGGGTTTTTGAAATTGTCAAGAACCAATGAATGGGTACTAGGTGACATATCTGCACCAATAAATAAAAAAGCCATTGCTAAGGCCTTGCAGAATGACAGTGAAAGAAGAAAGAAACTCAACCTTCTTCAATATGAAGCTCTGCAGAGGGAACTAATGCTATTATCTGTTGGTATTGGAACCGCATGTACTGGGTATTGTTTAATAGCATTATCATTCCAGTATATGTTTCTACTGACTTGCAAGTCTACCGCACAGGCTGCTGTCAGTTATGCTACGGGAGTTATTTTCAGTTGTTTGTACCTTAAACTCTTGTACCAGCAAGCAGACAATATATCCAGAGATGCAGTCCCTCAAATTTTCAGGCAGAGGAAGACCAAGAAAATTGGAATAAGAAGTGAGGATGTTGAGGATTTTCTAGAGAAGTCAATAAAGGGCTGTGGTATTGCTCTTTCATCTCCAAGGCTTGTAATACCAGCAGCAATATATGGATTGTGGATTCTGTCTCGTCAATATTTGGCCAGCGATCTCTTTGATTTCCAGCTTGTGCCAGCTATGCTTGGGATGTTTGTCTATAAAGCTGCTGCTCTTTATCAAGTTTATAGAGATAATGAAGACTTACAGTTTATCTTTCCAGAAAATGAAGAAGGCTTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

323

Amino Acids

36.27

Weight (kDa)

7.49

Isoelectric Point (pI)

44.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22340 AT5G22340
fragaria_vesca	FvH4_2g10360 FvH4_2g10370 FvH4_2g14080 FvH4_2g14080 FvH4_2g14080 FvH4_2g14080 FvH4_2g14080 FvH4_2g14080
malus_domestica	MD03G1149900.v1.1
prunus_persica	Prupe.6G135900_v2.0.a1 Prupe.6G135900_v2.0.a1 Prupe.6G135900_v2.0.a1 Prupe.6G135900_v2.0.a1
pyrus_communis	pycom03g10380
rosa_chinensis	RchiOBHm_Chr5g0045261
rosa_laevigata	RLG00000034350
rosa_multiflora	Rmu_sc0001773.1_g000023 Rmu_sc0007992.1_g000006
rosa_roxburghii	Rroxscaffold_1G00035790
rosa_rugosa	Rorug05G0222200 Rorug05G0222300
rosa_samantha	Rh5AG303300 Rh5BG311900 Rh5CG338000 Rh5DG322000
rosa_wichuraiana	Rw5G028160 Rw5G028390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	553
Acc36I	ACCTGC	1 cut(s)	280
AccB7I	CCANNNNNTGG	1 cut(s)	342
AccI	GTMKAC	1 cut(s)	557
AciI	CCGC	2 cut(s)	492, 561
AcoI	YGGCCR	2 cut(s)	256, 828
AcsI	RAATTY	2 cut(s)	221, 666
AfaI	GTAC	4 cut(s)	348, 499, 611, 626
AfiI	CCNNNNNNNGG	3 cut(s)	15, 16, 342
AgsI	TTSAA	4 cut(s)	175, 322, 440, 964
AluBI	AGCT	4 cut(s)	449, 853, 863, 890
AluI	AGCT	4 cut(s)	449, 853, 863, 890
Alw26I	GTCTC	3 cut(s)	94, 174, 819
AoxI	GGCC	3 cut(s)	256, 393, 828
ApeKI	GCWGC	4 cut(s)	569, 788, 890, 893
ApoI	RAATTY	2 cut(s)	221, 666
AspS9I	GGNCC	1 cut(s)	6
AsuHPI	GGTGA	1 cut(s)	365
AvaII	GGWCC	1 cut(s)	6
BaeI	ACNNNNGTAYC	2 cut(s)	608, 641
BalI	TGGCCA	1 cut(s)	830
BbsI	GAAGAC	2 cut(s)	689, 930
BbvI	GCAGC	4 cut(s)	556, 800, 877, 880
BccI	CCATC	1 cut(s)	91
BcoDI	GTCTC	3 cut(s)	94, 174, 819
BfaI	CTAG	2 cut(s)	350, 728
BfmI	CTRYAG	2 cut(s)	146, 452
BfuAI	ACCTGC	1 cut(s)	280
BisI	GCNGC	4 cut(s)	570, 789, 891, 894
BlsI	GCNGC	4 cut(s)	571, 790, 892, 895
Bme18I	GGWCC	1 cut(s)	6
BmgT120I	GGNCC	1 cut(s)	6
BmiI	GGNNCC	3 cut(s)	7, 8, 490
BmrI	ACTGGG	1 cut(s)	510
BmsI	GCATC	2 cut(s)	232, 643
BmuI	ACTGGG	1 cut(s)	510
BpiI	GAAGAC	2 cut(s)	689, 930
BplI	GAGNNNNNCTC	2 cut(s)	14, 46
Bpu10I	CCTNAGC	1 cut(s)	390
BsaI	GGTCTC	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	770
BsaXI	ACNNNNNCTCC	2 cut(s)	171, 201
Bsc4I	CCNNNNNNNGG	3 cut(s)	15, 16, 342
Bse1I	ACTGG	3 cut(s)	313, 505, 529
Bse3DI	GCAATG	1 cut(s)	384
BseDI	CCNNGG	1 cut(s)	770
BseGI	GGATG	2 cut(s)	718, 879
BseLI	CCNNNNNNNGG	3 cut(s)	15, 16, 342
BseMI	GCAATG	1 cut(s)	384
BseMII	CTCAG	2 cut(s)	28, 105
BseNI	ACTGG	3 cut(s)	313, 505, 529
BseRI	GAGGAG	1 cut(s)	264
BseXI	GCAGC	4 cut(s)	556, 800, 877, 880
BsgI	GTGCAG	1 cut(s)	348
BshFI	GGCC	3 cut(s)	258, 395, 830
BslFI	GGGAC	2 cut(s)	19, 644
BslI	CCNNNNNNNGG	3 cut(s)	15, 16, 342
BsmAI	GTCTC	3 cut(s)	94, 174, 819
BsmFI	GGGAC	2 cut(s)	19, 644
BsnI	GGCC	3 cut(s)	258, 395, 830
Bso31I	GGTCTC	1 cut(s)	174
Bsp143I	GATC	1 cut(s)	835
BspACI	CCGC	2 cut(s)	492, 561
BspANI	GGCC	3 cut(s)	258, 395, 830
BspCNI	CTCAG	2 cut(s)	27, 104
BspLI	GGNNCC	3 cut(s)	7, 8, 490
BspMAI	CTGCAG	2 cut(s)	150, 456
BspMI	ACCTGC	1 cut(s)	280
BspTNI	GGTCTC	1 cut(s)	174
BsrDI	GCAATG	1 cut(s)	384
BsrI	ACTGG	3 cut(s)	313, 505, 529
BssECI	CCNNGG	1 cut(s)	770
BssMI	GATC	1 cut(s)	835
BssT1I	CCWWGG	1 cut(s)	770
Bst4CI	ACNGT	3 cut(s)	171, 410, 933
Bst6I	CTCTTC	1 cut(s)	129
BstAPI	GCANNNNNTGC	1 cut(s)	569
BstC8I	GCNNGC	4 cut(s)	150, 633, 832, 861
BstDEI	CTNAG	4 cut(s)	14, 91, 98, 390
BstF5I	GGATG	2 cut(s)	718, 879
BstKTI	GATC	1 cut(s)	838
BstMAI	GTCTC	3 cut(s)	94, 174, 819
BstMBI	GATC	1 cut(s)	835
BstMWI	GCNNNNNNNGC	2 cut(s)	569, 865
BstNSI	RCATGY	1 cut(s)	498
BstSFI	CTRYAG	2 cut(s)	146, 452
BstV1I	GCAGC	4 cut(s)	556, 800, 877, 880
BstV2I	GAAGAC	2 cut(s)	689, 930
BsuRI	GGCC	3 cut(s)	258, 395, 830
BtsCI	GGATG	2 cut(s)	718, 879
BtsIMutI	CAGTG	1 cut(s)	415
BveI	ACCTGC	1 cut(s)	280
Cac8I	GCNNGC	4 cut(s)	150, 633, 832, 861
Cfr13I	GGNCC	1 cut(s)	6
Csp6I	GTAC	4 cut(s)	347, 498, 610, 625
CviAII	CATG	1 cut(s)	495
CviQI	GTAC	4 cut(s)	347, 498, 610, 625
DdeI	CTNAG	4 cut(s)	14, 91, 98, 390
DpnI	GATC	1 cut(s)	837
DpnII	GATC	1 cut(s)	835
DrdI	GACNNNNNNGTC	1 cut(s)	553
DseDI	GACNNNNNNGTC	1 cut(s)	553
EaeI	YGGCCR	2 cut(s)	256, 828
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
Eco130I	CCWWGG	1 cut(s)	770
Eco147I	AGGCCT	1 cut(s)	395
Eco31I	GGTCTC	1 cut(s)	174
Eco47I	GGWCC	1 cut(s)	6
EcoO109I	RGGNCCY	1 cut(s)	6
EcoT14I	CCWWGG	1 cut(s)	770
ErhI	CCWWGG	1 cut(s)	770
FaeI	CATG	1 cut(s)	498
FaqI	GGGAC	2 cut(s)	19, 644
FatI	CATG	1 cut(s)	494
FblI	GTMKAC	1 cut(s)	557
Fnu4HI	GCNGC	4 cut(s)	570, 789, 891, 894
FokI	GGATG	2 cut(s)	725, 886
Fsp4HI	GCNGC	4 cut(s)	570, 789, 891, 894
FspBI	CTAG	2 cut(s)	350, 728
GluI	GCNGC	4 cut(s)	570, 789, 891, 894
HaeIII	GGCC	3 cut(s)	258, 395, 830
Hin1II	CATG	1 cut(s)	498
HinfI	GANTC	1 cut(s)	808
HphI	GGTGA	1 cut(s)	365
Hpy166II	GTNNAC	3 cut(s)	65, 125, 558
Hpy188I	TCNGA	1 cut(s)	202
Hpy188III	TCNNGA	4 cut(s)	330, 648, 728, 944
Hpy8I	GTNNAC	3 cut(s)	65, 125, 558
HpyAV	CCTTC	5 cut(s)	20, 43, 211, 443, 950
HpyCH4III	ACNGT	3 cut(s)	171, 410, 933
HpyCH4V	TGCA	8 cut(s)	131, 148, 296, 365, 400, 454, 552, 656
HpyF10VI	GCNNNNNNNGC	2 cut(s)	569, 865
HpyF3I	CTNAG	4 cut(s)	14, 91, 98, 390
Hsp92II	CATG	1 cut(s)	498
KflI	GGGWCCC	1 cut(s)	6
Kzo9I	GATC	1 cut(s)	835
Lsp1109I	GCAGC	4 cut(s)	556, 800, 877, 880
LweI	GCATC	2 cut(s)	232, 643
MaeI	CTAG	2 cut(s)	350, 728
MaeIII	GTNAC	1 cut(s)	353
MalI	GATC	1 cut(s)	837
MboI	GATC	1 cut(s)	835
MboII	GAAGA	6 cut(s)	146, 428, 429, 694, 935, 965
MlsI	TGGCCA	1 cut(s)	830
MluCI	AATT	4 cut(s)	221, 323, 666, 693
MluNI	TGGCCA	1 cut(s)	830
MnlI	CCTC	8 cut(s)	123, 130, 285, 450, 672, 672, 703, 712
Mox20I	TGGCCA	1 cut(s)	830
MscI	TGGCCA	1 cut(s)	830
MseI	TTAA	3 cut(s)	159, 512, 615
Msp20I	TGGCCA	1 cut(s)	830
MwoI	GCNNNNNNNGC	2 cut(s)	569, 865
NdeII	GATC	1 cut(s)	835
NlaIII	CATG	1 cut(s)	498
NlaIV	GGNNCC	3 cut(s)	7, 8, 490
NmuCI	GTSAC	1 cut(s)	353
NspI	RCATGY	1 cut(s)	498
PceI	AGGCCT	1 cut(s)	395
PfeI	GAWTC	1 cut(s)	808
PflMI	CCANNNNNTGG	1 cut(s)	342
PkrI	GCNGC	4 cut(s)	571, 790, 892, 895
PpuMI	RGGWCCY	1 cut(s)	6
Psp5II	RGGWCCY	1 cut(s)	6
PspN4I	GGNNCC	3 cut(s)	7, 8, 490
PspPI	GGNCC	1 cut(s)	6
PspPPI	RGGWCCY	1 cut(s)	6
PsrI	GAACNNNNNNTAC	2 cut(s)	481, 513
PstI	CTGCAG	2 cut(s)	150, 456
RsaI	GTAC	4 cut(s)	348, 499, 611, 626
RsaNI	GTAC	4 cut(s)	347, 498, 610, 625
SaqAI	TTAA	3 cut(s)	159, 512, 615
SatI	GCNGC	4 cut(s)	570, 789, 891, 894
Sau3AI	GATC	1 cut(s)	835
Sau96I	GGNCC	1 cut(s)	6
SfaNI	GCATC	2 cut(s)	232, 643
SfcI	CTRYAG	2 cut(s)	146, 452
SinI	GGWCC	1 cut(s)	6
Sse9I	AATT	4 cut(s)	221, 323, 666, 693
SseBI	AGGCCT	1 cut(s)	395
SsiI	CCGC	2 cut(s)	492, 561
SspI	AATATT	1 cut(s)	824
SspMI	CTAG	2 cut(s)	350, 728
StuI	AGGCCT	1 cut(s)	395
StyI	CCWWGG	1 cut(s)	770
TaaI	ACNGT	3 cut(s)	171, 410, 933
TasI	AATT	4 cut(s)	221, 323, 666, 693
TatI	WGTACW	1 cut(s)	497
TfiI	GAWTC	1 cut(s)	808
Tru1I	TTAA	3 cut(s)	159, 512, 615
Tru9I	TTAA	3 cut(s)	159, 512, 615
TscAI	CASTG	1 cut(s)	415
TseFI	GTSAC	1 cut(s)	353
TseI	GCWGC	4 cut(s)	569, 788, 890, 893
Tsp45I	GTSAC	1 cut(s)	353
TspDTI	ATGAA	5 cut(s)	354, 459, 753, 936, 966
TspGWI	ACGGA	1 cut(s)	44
TspRI	CASTG	1 cut(s)	415
Van91I	CCANNNNNTGG	1 cut(s)	342
VpaK11BI	GGWCC	1 cut(s)	6
XapI	RAATTY	2 cut(s)	221, 666
XbaI	TCTAGA	1 cut(s)	727
XceI	RCATGY	1 cut(s)	498
XmiI	GTMKAC	1 cut(s)	557
XspI	CTAG	2 cut(s)	350, 728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.