Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007992.1

Orthogroup ID

OG0005470

Physical Location & Seq

Genomic Coordinates Reverse (-)

27453 .. 32855

Gene Structure 5403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007992.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

atggagacccttttcagggttgtgtgctcctcattcccagcaactcctccaacccctcatcgctcactttccactagaaacccgtctgtctcggccctcaaaacaggcccatctcctgtgagtgagcttgcagaagaggacgtgctgcagacgttcttcaaggaaagacagttgaatggagacttcatatcaagactttctgacgtgttttggcagagggagtttacgaattttgttgatggtgatggtgttggtgacattgatgacactactactcaacaacaagcagaagagcaggctgtgaatgacgctggtgggtttttgaaactgtcagcaaccaatgaatgggtgttaggtgatagatctgcaccgattaataaaaaagccattgctaaggccatgcagaatgacagtgaaagaaggaagaaactcaaccttcttcaatatgaagctatacagagggaactaatgcttttgtctattggtattggaactgcttgtactgggtattgtttaataacactgtcattccagggtgctgtcagttatgcgacaggagttcttttcagttgcttgtaccttaaactcttgtaccagcatgtagacaatatatcccgagaagcagtccctcagattttccggcagaagaagtctaagaaaattggaataagaagtcaggatctggaggattttctagagaaattgataaagggctgtggtatggctctttcatctccaaggcttgtgttaccagcagcaatatatggattgtggatcctgtctcatcaatatgtttccagtgatctctttgattttcagcttgtgccagctatggtcgggttgtttgtttataaagctgctgctcttgttcaagtctatagagataatgaagacctgcaattgatttttccggatgacctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

307

Amino Acids

34.28

Weight (kDa)

5.37

Isoelectric Point (pI)

40.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22340 AT5G22340
fragaria_vesca	FvH4_2g10360 FvH4_2g10370 FvH4_2g14080 FvH4_2g14080 FvH4_2g14080 FvH4_2g14080 FvH4_2g14080 FvH4_2g14080
malus_domestica	MD03G1149900.v1.1
prunus_persica	Prupe.6G135900_v2.0.a1 Prupe.6G135900_v2.0.a1 Prupe.6G135900_v2.0.a1 Prupe.6G135900_v2.0.a1
pyrus_communis	pycom03g10380
rosa_chinensis	RchiOBHm_Chr5g0045261
rosa_laevigata	RLG00000034350
rosa_multiflora	Rmu_sc0001773.1_g000023 Rmu_sc0007992.1_g000006
rosa_roxburghii	Rroxscaffold_1G00035790
rosa_rugosa	Rorug05G0222200 Rorug05G0222300
rosa_samantha	Rh5AG303300 Rh5BG311900 Rh5CG338000 Rh5DG322000
rosa_wichuraiana	Rw5G028160 Rw5G028390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	852
Acc36I	ACCTGC	1 cut(s)	903
AccB7I	CCANNNNNTGG	1 cut(s)	345
AccI	GTMKAC	1 cut(s)	603
AccIII	TCCGGA	1 cut(s)	910
AclWI	GGATC	3 cut(s)	687, 769, 782
AcsI	RAATTY	1 cut(s)	229
AfaI	GTAC	3 cut(s)	502, 578, 593
AfiI	CCNNNNNNNGG	3 cut(s)	15, 16, 345
AflIII	ACRYGT	1 cut(s)	204
AgsI	TTSAA	5 cut(s)	160, 175, 325, 443, 872
AjiI	CACGTC	2 cut(s)	142, 205
AjnI	CCWGG	1 cut(s)	531
AluBI	AGCT	5 cut(s)	127, 452, 820, 830, 857
AluI	AGCT	5 cut(s)	127, 452, 820, 830, 857
Alw21I	GWGCWC	1 cut(s)	29
Alw26I	GTCTC	3 cut(s)	94, 174, 786
AlwI	GGATC	3 cut(s)	687, 769, 782
AlwNI	CAGNNNCTG	1 cut(s)	682
Ama87I	CYCGRG	1 cut(s)	615
Aor13HI	TCCGGA	1 cut(s)	910
AoxI	GGCC	3 cut(s)	93, 106, 396
ApeKI	GCWGC	4 cut(s)	145, 755, 857, 860
ApoI	RAATTY	1 cut(s)	229
AseI	ATTAAT	1 cut(s)	375
AspS9I	GGNCC	2 cut(s)	94, 107
AsuHPI	GGTGA	3 cut(s)	254, 266, 368
AvaI	CYCGRG	1 cut(s)	615
BaeI	ACNNNNGTAYC	2 cut(s)	575, 608
BamHI	GGATCC	1 cut(s)	774
BbsI	GAAGAC	1 cut(s)	897
Bbv12I	GWGCWC	1 cut(s)	29
BbvI	GCAGC	4 cut(s)	132, 767, 844, 847
BccI	CCATC	3 cut(s)	118, 233, 239
BciT130I	CCWGG	1 cut(s)	533
BcoDI	GTCTC	3 cut(s)	94, 174, 786
BfaI	CTAG	2 cut(s)	75, 695
BfmI	CTRYAG	2 cut(s)	146, 877
BfuAI	ACCTGC	1 cut(s)	903
BglII	AGATCT	1 cut(s)	362
BisI	GCNGC	4 cut(s)	146, 756, 858, 861
BlsI	GCNGC	4 cut(s)	147, 757, 859, 862
Bme1390I	CCNGG	1 cut(s)	533
BmeT110I	CYCGRG	1 cut(s)	615
BmgBI	CACGTC	2 cut(s)	142, 205
BmgT120I	GGNCC	2 cut(s)	94, 107
BmiI	GGNNCC	1 cut(s)	776
BmrFI	CCNGG	1 cut(s)	533
BmrI	ACTGGG	1 cut(s)	513
BmuI	ACTGGG	1 cut(s)	513
BpiI	GAAGAC	1 cut(s)	897
BpmI	CTGGAG	1 cut(s)	704
Bpu10I	CCTNAGC	1 cut(s)	393
BsaJI	CCNNGG	2 cut(s)	532, 737
BsaWI	WCCGGW	1 cut(s)	910
Bsc4I	CCNNNNNNNGG	3 cut(s)	15, 16, 345
Bse1I	ACTGG	2 cut(s)	508, 798
Bse3DI	GCAATG	1 cut(s)	387
BseAI	TCCGGA	1 cut(s)	910
BseBI	CCWGG	1 cut(s)	533
BseDI	CCNNGG	2 cut(s)	532, 737
BseGI	GGATG	1 cut(s)	919
BseLI	CCNNNNNNNGG	3 cut(s)	15, 16, 345
BseMI	GCAATG	1 cut(s)	387
BseMII	CTCAG	1 cut(s)	644
BseNI	ACTGG	2 cut(s)	508, 798
BseRI	GAGGAG	2 cut(s)	19, 36
BseXI	GCAGC	4 cut(s)	132, 767, 844, 847
BseYI	CCCAGC	1 cut(s)	37
BsgI	GTGCAG	1 cut(s)	351
BshFI	GGCC	3 cut(s)	95, 108, 398
BsiHKAI	GWGCWC	1 cut(s)	29
BsiHKCI	CYCGRG	1 cut(s)	615
BsiSI	CCGG	2 cut(s)	640, 911
BslFI	GGGAC	1 cut(s)	611
BslI	CCNNNNNNNGG	3 cut(s)	15, 16, 345
BsmAI	GTCTC	3 cut(s)	94, 174, 786
BsmFI	GGGAC	1 cut(s)	611
BsnI	GGCC	3 cut(s)	95, 108, 398
BsoBI	CYCGRG	1 cut(s)	615
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp13I	TCCGGA	1 cut(s)	910
Bsp143I	GATC	4 cut(s)	362, 679, 774, 802
BspANI	GGCC	3 cut(s)	95, 108, 398
BspCNI	CTCAG	1 cut(s)	643
BspEI	TCCGGA	1 cut(s)	910
BspLI	GGNNCC	1 cut(s)	776
BspMAI	CTGCAG	1 cut(s)	150
BspMI	ACCTGC	1 cut(s)	903
BspPI	GGATC	3 cut(s)	687, 769, 782
BspQI	GCTCTTC	1 cut(s)	285
BsrDI	GCAATG	1 cut(s)	387
BsrI	ACTGG	2 cut(s)	508, 798
BssECI	CCNNGG	2 cut(s)	532, 737
BssMI	GATC	4 cut(s)	362, 679, 774, 802
BssT1I	CCWWGG	1 cut(s)	737
Bst2UI	CCWGG	1 cut(s)	533
Bst4CI	ACNGT	4 cut(s)	171, 330, 413, 525
Bst6I	CTCTTC	2 cut(s)	129, 285
BstC8I	GCNNGC	3 cut(s)	129, 297, 828
BstDEI	CTNAG	3 cut(s)	393, 630, 654
BstF5I	GGATG	1 cut(s)	919
BstKTI	GATC	4 cut(s)	365, 682, 777, 805
BstMAI	GTCTC	3 cut(s)	94, 174, 786
BstMBI	GATC	4 cut(s)	362, 679, 774, 802
BstNI	CCWGG	1 cut(s)	533
BstNSI	RCATGY	1 cut(s)	602
BstSCI	CCNGG	1 cut(s)	531
BstSFI	CTRYAG	2 cut(s)	146, 877
BstV1I	GCAGC	4 cut(s)	132, 767, 844, 847
BstV2I	GAAGAC	1 cut(s)	897
BstX2I	RGATCY	3 cut(s)	362, 679, 774
BstYI	RGATCY	3 cut(s)	362, 679, 774
BsuRI	GGCC	3 cut(s)	95, 108, 398
BtgZI	GCGATG	1 cut(s)	44
BtrI	CACGTC	2 cut(s)	142, 205
BtsCI	GGATG	1 cut(s)	919
BtsIMutI	CAGTG	3 cut(s)	418, 521, 805
BveI	ACCTGC	1 cut(s)	903
Cac8I	GCNNGC	3 cut(s)	129, 297, 828
CaiI	CAGNNNCTG	1 cut(s)	682
Cfr13I	GGNCC	2 cut(s)	94, 107
CseI	GACGC	1 cut(s)	317
Csp6I	GTAC	3 cut(s)	501, 577, 592
CviAII	CATG	2 cut(s)	400, 599
CviQI	GTAC	3 cut(s)	501, 577, 592
DdeI	CTNAG	3 cut(s)	393, 630, 654
DpnI	GATC	4 cut(s)	364, 681, 776, 804
DpnII	GATC	4 cut(s)	362, 679, 774, 802
Eam1104I	CTCTTC	2 cut(s)	129, 285
EarI	CTCTTC	2 cut(s)	129, 285
Eco130I	CCWWGG	1 cut(s)	737
Eco88I	CYCGRG	1 cut(s)	615
EcoRII	CCWGG	1 cut(s)	531
EcoT14I	CCWWGG	1 cut(s)	737
ErhI	CCWWGG	1 cut(s)	737
FaeI	CATG	2 cut(s)	403, 602
FaqI	GGGAC	1 cut(s)	611
FatI	CATG	2 cut(s)	399, 598
FblI	GTMKAC	1 cut(s)	603
Fnu4HI	GCNGC	4 cut(s)	146, 756, 858, 861
Fsp4HI	GCNGC	4 cut(s)	146, 756, 858, 861
FspBI	CTAG	2 cut(s)	75, 695
GluI	GCNGC	4 cut(s)	146, 756, 858, 861
GsaI	CCCAGC	1 cut(s)	41
GsuI	CTGGAG	1 cut(s)	704
HaeIII	GGCC	3 cut(s)	95, 108, 398
HapII	CCGG	2 cut(s)	640, 911
HgaI	GACGC	1 cut(s)	317
Hin1II	CATG	2 cut(s)	403, 602
HpaII	CCGG	2 cut(s)	640, 911
HphI	GGTGA	3 cut(s)	254, 266, 368
Hpy166II	GTNNAC	2 cut(s)	225, 604
Hpy188I	TCNGA	2 cut(s)	202, 633
Hpy188III	TCNNGA	6 cut(s)	192, 615, 677, 683, 695, 911
Hpy8I	GTNNAC	2 cut(s)	225, 604
HpyAV	CCTTC	2 cut(s)	414, 446
HpyCH4III	ACNGT	4 cut(s)	171, 330, 413, 525
HpyCH4IV	ACGT	3 cut(s)	141, 152, 204
HpyCH4V	TGCA	5 cut(s)	131, 148, 368, 403, 898
HpyF3I	CTNAG	3 cut(s)	393, 630, 654
HpySE526I	ACGT	3 cut(s)	141, 152, 204
Hsp92II	CATG	2 cut(s)	403, 602
Kpn2I	TCCGGA	1 cut(s)	910
Kzo9I	GATC	4 cut(s)	362, 679, 774, 802
LguI	GCTCTTC	1 cut(s)	285
LmnI	GCTCC	1 cut(s)	32
Lsp1109I	GCAGC	4 cut(s)	132, 767, 844, 847
MaeI	CTAG	2 cut(s)	75, 695
MaeII	ACGT	3 cut(s)	141, 152, 204
MaeIII	GTNAC	2 cut(s)	254, 747
MalI	GATC	4 cut(s)	364, 681, 776, 804
MboI	GATC	4 cut(s)	362, 679, 774, 802
MboII	GAAGA	7 cut(s)	146, 148, 302, 431, 436, 658, 902
MfeI	CAATTG	1 cut(s)	899
MflI	RGATCY	3 cut(s)	362, 679, 774
MhlI	GDGCHC	1 cut(s)	29
MluCI	AATT	4 cut(s)	229, 660, 701, 899
MmeI	TCCRAC	1 cut(s)	74
MnlI	CCTC	9 cut(s)	40, 57, 66, 107, 130, 210, 453, 639, 679
MroI	TCCGGA	1 cut(s)	910
MseI	TTAA	3 cut(s)	375, 515, 582
MslI	CAYNNNNRTG	1 cut(s)	789
MspI	CCGG	2 cut(s)	640, 911
MspR9I	CCNGG	1 cut(s)	533
MunI	CAATTG	1 cut(s)	899
MvaI	CCWGG	1 cut(s)	533
NdeII	GATC	4 cut(s)	362, 679, 774, 802
NlaIII	CATG	2 cut(s)	403, 602
NlaIV	GGNNCC	1 cut(s)	776
NmeAIII	GCCGAG	1 cut(s)	71
NmuCI	GTSAC	1 cut(s)	254
NspI	RCATGY	1 cut(s)	602
PciSI	GCTCTTC	1 cut(s)	285
PflMI	CCANNNNNTGG	1 cut(s)	345
PkrI	GCNGC	4 cut(s)	147, 757, 859, 862
PshBI	ATTAAT	1 cut(s)	375
PsiI	TTATAA	1 cut(s)	852
Psp6I	CCWGG	1 cut(s)	531
PspFI	CCCAGC	1 cut(s)	37
PspGI	CCWGG	1 cut(s)	531
PspN4I	GGNNCC	1 cut(s)	776
PspPI	GGNCC	2 cut(s)	94, 107
PsrI	GAACNNNNNNTAC	2 cut(s)	484, 516
PstI	CTGCAG	1 cut(s)	150
PstNI	CAGNNNCTG	1 cut(s)	682
PsuI	RGATCY	3 cut(s)	362, 679, 774
RsaI	GTAC	3 cut(s)	502, 578, 593
RsaNI	GTAC	3 cut(s)	501, 577, 592
RseI	CAYNNNNRTG	1 cut(s)	789
SapI	GCTCTTC	1 cut(s)	285
SaqAI	TTAA	3 cut(s)	375, 515, 582
SatI	GCNGC	4 cut(s)	146, 756, 858, 861
Sau3AI	GATC	4 cut(s)	362, 679, 774, 802
Sau96I	GGNCC	2 cut(s)	94, 107
ScrFI	CCNGG	1 cut(s)	533
SduI	GDGCHC	1 cut(s)	29
SfcI	CTRYAG	2 cut(s)	146, 877
SmiMI	CAYNNNNRTG	1 cut(s)	789
Sse9I	AATT	4 cut(s)	229, 660, 701, 899
SspMI	CTAG	2 cut(s)	75, 695
StyD4I	CCNGG	1 cut(s)	531
StyI	CCWWGG	1 cut(s)	737
TaaI	ACNGT	4 cut(s)	171, 330, 413, 525
TaiI	ACGT	3 cut(s)	144, 155, 207
TasI	AATT	4 cut(s)	229, 660, 701, 899
TatI	WGTACW	1 cut(s)	500
Tru1I	TTAA	3 cut(s)	375, 515, 582
Tru9I	TTAA	3 cut(s)	375, 515, 582
TscAI	CASTG	3 cut(s)	418, 528, 805
TseFI	GTSAC	1 cut(s)	254
TseI	GCWGC	4 cut(s)	145, 755, 857, 860
Tsp45I	GTSAC	1 cut(s)	254
TspDTI	ATGAA	5 cut(s)	175, 357, 462, 720, 903
TspRI	CASTG	3 cut(s)	418, 528, 805
Van91I	CCANNNNNTGG	1 cut(s)	345
VspI	ATTAAT	1 cut(s)	375
XapI	RAATTY	1 cut(s)	229
XbaI	TCTAGA	1 cut(s)	694
XceI	RCATGY	1 cut(s)	602
XmiI	GTMKAC	1 cut(s)	603
XspI	CTAG	2 cut(s)	75, 695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.