Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0005470

Physical Location & Seq

Genomic Coordinates Reverse (-)

38632315 .. 38638332

Gene Structure 6018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG338000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGAAGACCCTTTTCAGGGTTGTGTGCTCCTCATTCCCAGCAACTCCTCCAATCCCTCATCGCTCACTTTCCACCAGAAACCCATCTGTCTCGGCCCTCAGAACCGGCCCATCTCCTGTGAGTGAGCTTGCAGAAGAGGACGTGCTGCAGACGTTCTTCAAGGAAAGACAGTTGAATGGAGACTTCGTATCAAGACTTTCTGACGTGTTTTGGCAGAGGGAGTTTACGAATTTTGTTGATGGTGATGGTGTTGGTGACATTGATGACACTACTACTCAACAACAAGCAGAAGAGCAGGCTGTGAATGACGCTGGTGGGTTTTTGAAACTGTCAGCAACCAATGAATGGGTGTTAGGTGATAGATCTGCACCGATTAATAAAAAAGCCATTGCTAAGGCCATGCAGAATGACAGTGAAAGAAGGAAGAAACTCAACCTTCTTCAATATGAAGCTATACAGAGGGAACTAATGCTTTTGTCTATTGGTATTGGAACTGCATGTACTGGGTATTGTTTAATAACACTGTCATTCCAGTGTATGTTTTTCTTCTGGAGAACTAACACGGAGTCATCCATCCAGGGTGCCGTCAGTTATGCGACAGGAGTTCTTTTCAGTTGCTTGTACCTTAAACTCTTGTACCAGCATGTAGACAATATATCCCGAGAAGCAGTCCCTCAGATTTTCCGGCAGAAGAAGTCTAAGAAAATTGGAATAAGAAGTCAGGATCTGGAGGATTTTCTAGAGAAATTGATAAAGGGCTGTGGTATGGCTCTTTCATCTCCAAGGCTTGTGTTACCAGCAGCAATATATGGATTGTGGATCCTGTCTCATCAATATGTTTCCAGTGATCTCTTTGATTTTCAGCTTGTGCCAGCTATGGTCGGGTTGTTTGTTTATAAAGCTGCTGCTCTTGTTCAAGTTTATAGAGATAATGAAGACCTGCAATTGATCTTTCCTGATGACCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

322

Amino Acids

36.18

Weight (kDa)

5.75

Isoelectric Point (pI)

42.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22340 AT5G22340
fragaria_vesca	FvH4_2g10360 FvH4_2g10370 FvH4_2g14080 FvH4_2g14080 FvH4_2g14080 FvH4_2g14080 FvH4_2g14080 FvH4_2g14080
malus_domestica	MD03G1149900.v1.1
prunus_persica	Prupe.6G135900_v2.0.a1 Prupe.6G135900_v2.0.a1 Prupe.6G135900_v2.0.a1 Prupe.6G135900_v2.0.a1
pyrus_communis	pycom03g10380
rosa_chinensis	RchiOBHm_Chr5g0045261
rosa_laevigata	RLG00000034350
rosa_multiflora	Rmu_sc0001773.1_g000023 Rmu_sc0007992.1_g000006
rosa_roxburghii	Rroxscaffold_1G00035790
rosa_rugosa	Rorug05G0222200 Rorug05G0222300
rosa_samantha	Rh5AG303300 Rh5BG311900 Rh5CG338000 Rh5DG322000
rosa_wichuraiana	Rw5G028160 Rw5G028390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	897
Acc36I	ACCTGC	1 cut(s)	948
AccB1I	GGYRCC	1 cut(s)	581
AccB7I	CCANNNNNTGG	1 cut(s)	345
AccI	GTMKAC	1 cut(s)	648
AclWI	GGATC	3 cut(s)	732, 814, 827
AcsI	RAATTY	1 cut(s)	229
AfaI	GTAC	3 cut(s)	502, 623, 638
AfiI	CCNNNNNNNGG	3 cut(s)	15, 16, 345
AflIII	ACRYGT	1 cut(s)	204
AgsI	TTSAA	5 cut(s)	160, 175, 325, 443, 917
AjiI	CACGTC	2 cut(s)	142, 205
AjnI	CCWGG	1 cut(s)	576
AluBI	AGCT	5 cut(s)	127, 452, 865, 875, 902
AluI	AGCT	5 cut(s)	127, 452, 865, 875, 902
Alw21I	GWGCWC	1 cut(s)	29
Alw26I	GTCTC	3 cut(s)	94, 174, 831
AlwI	GGATC	3 cut(s)	732, 814, 827
AlwNI	CAGNNNCTG	1 cut(s)	727
Ama87I	CYCGRG	1 cut(s)	660
AoxI	GGCC	3 cut(s)	93, 106, 396
ApeKI	GCWGC	4 cut(s)	145, 800, 902, 905
ApoI	RAATTY	1 cut(s)	229
AseI	ATTAAT	1 cut(s)	375
AspS9I	GGNCC	2 cut(s)	94, 107
AsuHPI	GGTGA	3 cut(s)	254, 266, 368
AvaI	CYCGRG	1 cut(s)	660
BaeI	ACNNNNGTAYC	2 cut(s)	620, 653
BamHI	GGATCC	1 cut(s)	819
BanI	GGYRCC	1 cut(s)	581
BbsI	GAAGAC	2 cut(s)	11, 942
Bbv12I	GWGCWC	1 cut(s)	29
BbvI	GCAGC	4 cut(s)	132, 812, 889, 892
BccI	CCATC	5 cut(s)	91, 118, 233, 239, 581
BceAI	ACGGC	1 cut(s)	569
BciT130I	CCWGG	1 cut(s)	578
BcoDI	GTCTC	3 cut(s)	94, 174, 831
BfaI	CTAG	1 cut(s)	740
BfmI	CTRYAG	1 cut(s)	146
BfuAI	ACCTGC	1 cut(s)	948
BglII	AGATCT	1 cut(s)	362
BisI	GCNGC	4 cut(s)	146, 801, 903, 906
BlsI	GCNGC	4 cut(s)	147, 802, 904, 907
Bme1390I	CCNGG	1 cut(s)	578
BmeT110I	CYCGRG	1 cut(s)	660
BmgBI	CACGTC	2 cut(s)	142, 205
BmgT120I	GGNCC	2 cut(s)	94, 107
BmiI	GGNNCC	2 cut(s)	583, 821
BmrFI	CCNGG	1 cut(s)	578
BmrI	ACTGGG	1 cut(s)	513
BmuI	ACTGGG	1 cut(s)	513
BpiI	GAAGAC	2 cut(s)	11, 942
BpmI	CTGGAG	2 cut(s)	571, 749
Bpu10I	CCTNAGC	1 cut(s)	393
BsaJI	CCNNGG	2 cut(s)	577, 782
BsaXI	ACNNNNNCTCC	2 cut(s)	171, 201
Bsc4I	CCNNNNNNNGG	3 cut(s)	15, 16, 345
Bse118I	RCCGGY	1 cut(s)	104
Bse1I	ACTGG	3 cut(s)	508, 532, 843
Bse3DI	GCAATG	1 cut(s)	387
BseBI	CCWGG	1 cut(s)	578
BseDI	CCNNGG	2 cut(s)	577, 782
BseGI	GGATG	2 cut(s)	569, 573
BseLI	CCNNNNNNNGG	3 cut(s)	15, 16, 345
BseMI	GCAATG	1 cut(s)	387
BseMII	CTCAG	2 cut(s)	112, 689
BseNI	ACTGG	3 cut(s)	508, 532, 843
BseRI	GAGGAG	2 cut(s)	19, 36
BseXI	GCAGC	4 cut(s)	132, 812, 889, 892
BseYI	CCCAGC	1 cut(s)	37
BsgI	GTGCAG	1 cut(s)	351
BshFI	GGCC	3 cut(s)	95, 108, 398
BshNI	GGYRCC	1 cut(s)	581
BsiHKAI	GWGCWC	1 cut(s)	29
BsiHKCI	CYCGRG	1 cut(s)	660
BsiSI	CCGG	2 cut(s)	105, 685
BslFI	GGGAC	1 cut(s)	656
BslI	CCNNNNNNNGG	3 cut(s)	15, 16, 345
BsmAI	GTCTC	3 cut(s)	94, 174, 831
BsmFI	GGGAC	1 cut(s)	656
BsnI	GGCC	3 cut(s)	95, 108, 398
BsoBI	CYCGRG	1 cut(s)	660
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp143I	GATC	5 cut(s)	362, 724, 819, 847, 948
BspANI	GGCC	3 cut(s)	95, 108, 398
BspCNI	CTCAG	2 cut(s)	111, 688
BspLI	GGNNCC	2 cut(s)	583, 821
BspMAI	CTGCAG	1 cut(s)	150
BspMI	ACCTGC	1 cut(s)	948
BspPI	GGATC	3 cut(s)	732, 814, 827
BspQI	GCTCTTC	1 cut(s)	285
BspT107I	GGYRCC	1 cut(s)	581
BsrDI	GCAATG	1 cut(s)	387
BsrFI	RCCGGY	1 cut(s)	104
BsrI	ACTGG	3 cut(s)	508, 532, 843
BssAI	RCCGGY	1 cut(s)	104
BssECI	CCNNGG	2 cut(s)	577, 782
BssMI	GATC	5 cut(s)	362, 724, 819, 847, 948
BssT1I	CCWWGG	1 cut(s)	782
Bst2UI	CCWGG	1 cut(s)	578
Bst4CI	ACNGT	4 cut(s)	171, 330, 413, 525
Bst6I	CTCTTC	2 cut(s)	129, 285
BstC8I	GCNNGC	3 cut(s)	129, 297, 873
BstDEI	CTNAG	4 cut(s)	98, 393, 675, 699
BstF5I	GGATG	2 cut(s)	569, 573
BstKTI	GATC	5 cut(s)	365, 727, 822, 850, 951
BstMAI	GTCTC	3 cut(s)	94, 174, 831
BstMBI	GATC	5 cut(s)	362, 724, 819, 847, 948
BstNI	CCWGG	1 cut(s)	578
BstNSI	RCATGY	2 cut(s)	501, 647
BstSCI	CCNGG	1 cut(s)	576
BstSFI	CTRYAG	1 cut(s)	146
BstV1I	GCAGC	4 cut(s)	132, 812, 889, 892
BstV2I	GAAGAC	2 cut(s)	11, 942
BstX2I	RGATCY	3 cut(s)	362, 724, 819
BstYI	RGATCY	3 cut(s)	362, 724, 819
BsuRI	GGCC	3 cut(s)	95, 108, 398
BtgZI	GCGATG	1 cut(s)	44
BtrI	CACGTC	2 cut(s)	142, 205
BtsCI	GGATG	2 cut(s)	569, 573
BtsIMutI	CAGTG	4 cut(s)	418, 521, 539, 850
BveI	ACCTGC	1 cut(s)	948
Cac8I	GCNNGC	3 cut(s)	129, 297, 873
CaiI	CAGNNNCTG	1 cut(s)	727
Cfr10I	RCCGGY	1 cut(s)	104
Cfr13I	GGNCC	2 cut(s)	94, 107
CseI	GACGC	1 cut(s)	317
Csp6I	GTAC	3 cut(s)	501, 622, 637
CviAII	CATG	3 cut(s)	400, 498, 644
CviQI	GTAC	3 cut(s)	501, 622, 637
DdeI	CTNAG	4 cut(s)	98, 393, 675, 699
DpnI	GATC	5 cut(s)	364, 726, 821, 849, 950
DpnII	GATC	5 cut(s)	362, 724, 819, 847, 948
Eam1104I	CTCTTC	2 cut(s)	129, 285
EarI	CTCTTC	2 cut(s)	129, 285
Eco130I	CCWWGG	1 cut(s)	782
Eco88I	CYCGRG	1 cut(s)	660
EcoRII	CCWGG	1 cut(s)	576
EcoT14I	CCWWGG	1 cut(s)	782
ErhI	CCWWGG	1 cut(s)	782
FaeI	CATG	3 cut(s)	403, 501, 647
FaqI	GGGAC	1 cut(s)	656
FatI	CATG	3 cut(s)	399, 497, 643
FblI	GTMKAC	1 cut(s)	648
Fnu4HI	GCNGC	4 cut(s)	146, 801, 903, 906
FokI	GGATG	2 cut(s)	556, 560
Fsp4HI	GCNGC	4 cut(s)	146, 801, 903, 906
FspBI	CTAG	1 cut(s)	740
GluI	GCNGC	4 cut(s)	146, 801, 903, 906
GsaI	CCCAGC	1 cut(s)	41
GsuI	CTGGAG	2 cut(s)	571, 749
HaeIII	GGCC	3 cut(s)	95, 108, 398
HapII	CCGG	2 cut(s)	105, 685
HgaI	GACGC	1 cut(s)	317
Hin1II	CATG	3 cut(s)	403, 501, 647
HinfI	GANTC	1 cut(s)	566
HpaII	CCGG	2 cut(s)	105, 685
HphI	GGTGA	3 cut(s)	254, 266, 368
Hpy166II	GTNNAC	2 cut(s)	225, 649
Hpy188I	TCNGA	3 cut(s)	101, 202, 678
Hpy188III	TCNNGA	7 cut(s)	192, 550, 660, 722, 728, 740, 956
Hpy8I	GTNNAC	2 cut(s)	225, 649
HpyAV	CCTTC	2 cut(s)	414, 446
HpyCH4III	ACNGT	4 cut(s)	171, 330, 413, 525
HpyCH4IV	ACGT	3 cut(s)	141, 152, 204
HpyCH4V	TGCA	6 cut(s)	131, 148, 368, 403, 497, 943
HpyF3I	CTNAG	4 cut(s)	98, 393, 675, 699
HpySE526I	ACGT	3 cut(s)	141, 152, 204
Hsp92II	CATG	3 cut(s)	403, 501, 647
Kzo9I	GATC	5 cut(s)	362, 724, 819, 847, 948
LguI	GCTCTTC	1 cut(s)	285
LmnI	GCTCC	1 cut(s)	32
Lsp1109I	GCAGC	4 cut(s)	132, 812, 889, 892
MaeI	CTAG	1 cut(s)	740
MaeII	ACGT	3 cut(s)	141, 152, 204
MaeIII	GTNAC	2 cut(s)	254, 792
MalI	GATC	5 cut(s)	364, 726, 821, 849, 950
MboI	GATC	5 cut(s)	362, 724, 819, 847, 948
MboII	GAAGA	9 cut(s)	16, 146, 148, 302, 431, 436, 538, 703, 947
MfeI	CAATTG	1 cut(s)	944
MflI	RGATCY	3 cut(s)	362, 724, 819
MhlI	GDGCHC	1 cut(s)	29
MluCI	AATT	4 cut(s)	229, 705, 746, 944
MlyI	GAGTC	1 cut(s)	575
MnlI	CCTC	9 cut(s)	40, 57, 66, 107, 130, 210, 453, 684, 724
MseI	TTAA	3 cut(s)	375, 515, 627
MslI	CAYNNNNRTG	2 cut(s)	532, 834
MspI	CCGG	2 cut(s)	105, 685
MspR9I	CCNGG	1 cut(s)	578
MunI	CAATTG	1 cut(s)	944
MvaI	CCWGG	1 cut(s)	578
NdeII	GATC	5 cut(s)	362, 724, 819, 847, 948
NlaIII	CATG	3 cut(s)	403, 501, 647
NlaIV	GGNNCC	2 cut(s)	583, 821
NmeAIII	GCCGAG	1 cut(s)	71
NmuCI	GTSAC	1 cut(s)	254
NspI	RCATGY	2 cut(s)	501, 647
PciSI	GCTCTTC	1 cut(s)	285
PflMI	CCANNNNNTGG	1 cut(s)	345
PkrI	GCNGC	4 cut(s)	147, 802, 904, 907
PleI	GAGTC	1 cut(s)	574
PpsI	GAGTC	1 cut(s)	574
PshBI	ATTAAT	1 cut(s)	375
PsiI	TTATAA	1 cut(s)	897
Psp6I	CCWGG	1 cut(s)	576
PspFI	CCCAGC	1 cut(s)	37
PspGI	CCWGG	1 cut(s)	576
PspN4I	GGNNCC	2 cut(s)	583, 821
PspPI	GGNCC	2 cut(s)	94, 107
PsrI	GAACNNNNNNTAC	2 cut(s)	484, 516
PstI	CTGCAG	1 cut(s)	150
PstNI	CAGNNNCTG	1 cut(s)	727
PsuI	RGATCY	3 cut(s)	362, 724, 819
RsaI	GTAC	3 cut(s)	502, 623, 638
RsaNI	GTAC	3 cut(s)	501, 622, 637
RseI	CAYNNNNRTG	2 cut(s)	532, 834
SapI	GCTCTTC	1 cut(s)	285
SaqAI	TTAA	3 cut(s)	375, 515, 627
SatI	GCNGC	4 cut(s)	146, 801, 903, 906
Sau3AI	GATC	5 cut(s)	362, 724, 819, 847, 948
Sau96I	GGNCC	2 cut(s)	94, 107
SchI	GAGTC	1 cut(s)	575
ScrFI	CCNGG	1 cut(s)	578
SduI	GDGCHC	1 cut(s)	29
SfcI	CTRYAG	1 cut(s)	146
SmiMI	CAYNNNNRTG	2 cut(s)	532, 834
Sse9I	AATT	4 cut(s)	229, 705, 746, 944
SspMI	CTAG	1 cut(s)	740
StyD4I	CCNGG	1 cut(s)	576
StyI	CCWWGG	1 cut(s)	782
TaaI	ACNGT	4 cut(s)	171, 330, 413, 525
TaiI	ACGT	3 cut(s)	144, 155, 207
TasI	AATT	4 cut(s)	229, 705, 746, 944
TatI	WGTACW	1 cut(s)	500
Tru1I	TTAA	3 cut(s)	375, 515, 627
Tru9I	TTAA	3 cut(s)	375, 515, 627
TscAI	CASTG	4 cut(s)	418, 528, 539, 850
TseFI	GTSAC	1 cut(s)	254
TseI	GCWGC	4 cut(s)	145, 800, 902, 905
Tsp45I	GTSAC	1 cut(s)	254
TspDTI	ATGAA	5 cut(s)	17, 357, 462, 765, 948
TspGWI	ACGGA	1 cut(s)	578
TspRI	CASTG	4 cut(s)	418, 528, 539, 850
Van91I	CCANNNNNTGG	1 cut(s)	345
VspI	ATTAAT	1 cut(s)	375
XapI	RAATTY	1 cut(s)	229
XbaI	TCTAGA	1 cut(s)	739
XceI	RCATGY	2 cut(s)	501, 647
XmiI	GTMKAC	1 cut(s)	648
XspI	CTAG	1 cut(s)	740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.