Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001773.1

Orthogroup ID

OG0005470

Physical Location & Seq

Genomic Coordinates Reverse (-)

145120 .. 146185

Gene Structure 1066 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001773.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

atgcttttgtctattggtattggaactgcttgtactgggtattgtttaataacactgtcattccagggtgccgtcagttatgcgacaggagttctgttcagttgcttgtaccttaaactcttgtaccagcatgtagacaatatatcccgagaagcagtccctcagattttccggcagaagaagtctaagaaaattggaataagaagtcaggacctggaggattttctagagaaattgataaagggctgtggtatggctctttcatctccaaggcttgtgttaccagcagcaatatatggattgtggatcctgtctcatcaatatgtttccagtgatctctttgattttcagcttgtgccagctatggtcgggttgtttgtttataaagctgctgctcttgttcaagtctatagagataatgaaaacctgcaattgatttttcctgatgacctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

151

Amino Acids

16.84

Weight (kDa)

7.64

Isoelectric Point (pI)

39.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22340 AT5G22340
fragaria_vesca	FvH4_2g10360 FvH4_2g10370 FvH4_2g14080 FvH4_2g14080 FvH4_2g14080 FvH4_2g14080 FvH4_2g14080 FvH4_2g14080
malus_domestica	MD03G1149900.v1.1
prunus_persica	Prupe.6G135900_v2.0.a1 Prupe.6G135900_v2.0.a1 Prupe.6G135900_v2.0.a1 Prupe.6G135900_v2.0.a1
pyrus_communis	pycom03g10380
rosa_chinensis	RchiOBHm_Chr5g0045261
rosa_laevigata	RLG00000034350
rosa_multiflora	Rmu_sc0001773.1_g000023 Rmu_sc0007992.1_g000006
rosa_roxburghii	Rroxscaffold_1G00035790
rosa_rugosa	Rorug05G0222200 Rorug05G0222300
rosa_samantha	Rh5AG303300 Rh5BG311900 Rh5CG338000 Rh5DG322000
rosa_wichuraiana	Rw5G028160 Rw5G028390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	384
Acc36I	ACCTGC	1 cut(s)	435
AccB1I	GGYRCC	1 cut(s)	68
AccI	GTMKAC	1 cut(s)	135
AclWI	GGATC	2 cut(s)	301, 314
AfaI	GTAC	3 cut(s)	34, 110, 125
AgsI	TTSAA	1 cut(s)	404
AjnI	CCWGG	2 cut(s)	63, 213
AluBI	AGCT	3 cut(s)	352, 362, 389
AluI	AGCT	3 cut(s)	352, 362, 389
Alw26I	GTCTC	1 cut(s)	318
AlwI	GGATC	2 cut(s)	301, 314
AlwNI	CAGNNNCTG	1 cut(s)	214
Ama87I	CYCGRG	1 cut(s)	147
ApeKI	GCWGC	3 cut(s)	287, 389, 392
AspS9I	GGNCC	1 cut(s)	211
AvaI	CYCGRG	1 cut(s)	147
AvaII	GGWCC	1 cut(s)	211
BaeI	ACNNNNGTAYC	2 cut(s)	107, 140
BamHI	GGATCC	1 cut(s)	306
BanI	GGYRCC	1 cut(s)	68
BbvI	GCAGC	3 cut(s)	299, 376, 379
BceAI	ACGGC	1 cut(s)	56
BciT130I	CCWGG	2 cut(s)	65, 215
BcoDI	GTCTC	1 cut(s)	318
BfaI	CTAG	1 cut(s)	227
BfmI	CTRYAG	1 cut(s)	409
BfuAI	ACCTGC	1 cut(s)	435
BisI	GCNGC	3 cut(s)	288, 390, 393
BlsI	GCNGC	3 cut(s)	289, 391, 394
Bme1390I	CCNGG	2 cut(s)	65, 215
Bme18I	GGWCC	1 cut(s)	211
BmeT110I	CYCGRG	1 cut(s)	147
BmgT120I	GGNCC	1 cut(s)	211
BmiI	GGNNCC	2 cut(s)	70, 308
BmrFI	CCNGG	2 cut(s)	65, 215
BmrI	ACTGGG	1 cut(s)	45
BmuI	ACTGGG	1 cut(s)	45
BpmI	CTGGAG	1 cut(s)	236
BsaJI	CCNNGG	2 cut(s)	64, 269
Bse1I	ACTGG	2 cut(s)	40, 330
BseBI	CCWGG	2 cut(s)	65, 215
BseDI	CCNNGG	2 cut(s)	64, 269
BseMII	CTCAG	1 cut(s)	176
BseNI	ACTGG	2 cut(s)	40, 330
BseXI	GCAGC	3 cut(s)	299, 376, 379
BshNI	GGYRCC	1 cut(s)	68
BsiHKCI	CYCGRG	1 cut(s)	147
BsiSI	CCGG	1 cut(s)	172
BslFI	GGGAC	1 cut(s)	143
BsmAI	GTCTC	1 cut(s)	318
BsmFI	GGGAC	1 cut(s)	143
BsoBI	CYCGRG	1 cut(s)	147
Bsp143I	GATC	2 cut(s)	306, 334
BspCNI	CTCAG	1 cut(s)	175
BspLI	GGNNCC	2 cut(s)	70, 308
BspMI	ACCTGC	1 cut(s)	435
BspPI	GGATC	2 cut(s)	301, 314
BspT107I	GGYRCC	1 cut(s)	68
BsrI	ACTGG	2 cut(s)	40, 330
BssECI	CCNNGG	2 cut(s)	64, 269
BssMI	GATC	2 cut(s)	306, 334
BssT1I	CCWWGG	1 cut(s)	269
Bst2UI	CCWGG	2 cut(s)	65, 215
Bst4CI	ACNGT	1 cut(s)	57
BstC8I	GCNNGC	1 cut(s)	360
BstDEI	CTNAG	2 cut(s)	162, 186
BstKTI	GATC	2 cut(s)	309, 337
BstMAI	GTCTC	1 cut(s)	318
BstMBI	GATC	2 cut(s)	306, 334
BstNI	CCWGG	2 cut(s)	65, 215
BstNSI	RCATGY	1 cut(s)	134
BstSCI	CCNGG	2 cut(s)	63, 213
BstSFI	CTRYAG	1 cut(s)	409
BstV1I	GCAGC	3 cut(s)	299, 376, 379
BstX2I	RGATCY	1 cut(s)	306
BstYI	RGATCY	1 cut(s)	306
BtsIMutI	CAGTG	2 cut(s)	53, 337
BveI	ACCTGC	1 cut(s)	435
Cac8I	GCNNGC	1 cut(s)	360
CaiI	CAGNNNCTG	1 cut(s)	214
Cfr13I	GGNCC	1 cut(s)	211
Csp6I	GTAC	3 cut(s)	33, 109, 124
CviAII	CATG	1 cut(s)	131
CviJI	RGCY	6 cut(s)	246, 257, 274, 352, 362, 389
CviKI_1	RGCY	6 cut(s)	246, 257, 274, 352, 362, 389
CviQI	GTAC	3 cut(s)	33, 109, 124
DdeI	CTNAG	2 cut(s)	162, 186
DpnI	GATC	2 cut(s)	308, 336
DpnII	GATC	2 cut(s)	306, 334
Eco130I	CCWWGG	1 cut(s)	269
Eco47I	GGWCC	1 cut(s)	211
Eco88I	CYCGRG	1 cut(s)	147
EcoO109I	RGGNCCY	1 cut(s)	211
EcoRII	CCWGG	2 cut(s)	63, 213
EcoT14I	CCWWGG	1 cut(s)	269
ErhI	CCWWGG	1 cut(s)	269
FaeI	CATG	1 cut(s)	134
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	1 cut(s)	130
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	3 cut(s)	288, 390, 393
Fsp4HI	GCNGC	3 cut(s)	288, 390, 393
FspBI	CTAG	1 cut(s)	227
GluI	GCNGC	3 cut(s)	288, 390, 393
GsuI	CTGGAG	1 cut(s)	236
HapII	CCGG	1 cut(s)	172
Hin1II	CATG	1 cut(s)	134
HpaII	CCGG	1 cut(s)	172
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	1 cut(s)	165
Hpy188III	TCNNGA	4 cut(s)	147, 209, 227, 443
Hpy8I	GTNNAC	1 cut(s)	136
HpyCH4III	ACNGT	1 cut(s)	57
HpyCH4V	TGCA	1 cut(s)	430
HpyF3I	CTNAG	2 cut(s)	162, 186
Hsp92II	CATG	1 cut(s)	134
Kzo9I	GATC	2 cut(s)	306, 334
Lsp1109I	GCAGC	3 cut(s)	299, 376, 379
MaeI	CTAG	1 cut(s)	227
MaeIII	GTNAC	1 cut(s)	279
MalI	GATC	2 cut(s)	308, 336
MboI	GATC	2 cut(s)	306, 334
MboII	GAAGA	1 cut(s)	190
MfeI	CAATTG	1 cut(s)	431
MflI	RGATCY	1 cut(s)	306
MluCI	AATT	3 cut(s)	192, 233, 431
MnlI	CCTC	2 cut(s)	171, 211
MseI	TTAA	2 cut(s)	47, 114
MslI	CAYNNNNRTG	1 cut(s)	321
MspI	CCGG	1 cut(s)	172
MspR9I	CCNGG	2 cut(s)	65, 215
MunI	CAATTG	1 cut(s)	431
MvaI	CCWGG	2 cut(s)	65, 215
NdeII	GATC	2 cut(s)	306, 334
NlaIII	CATG	1 cut(s)	134
NlaIV	GGNNCC	2 cut(s)	70, 308
NspI	RCATGY	1 cut(s)	134
PkrI	GCNGC	3 cut(s)	289, 391, 394
PpuMI	RGGWCCY	1 cut(s)	211
PsiI	TTATAA	1 cut(s)	384
Psp5II	RGGWCCY	1 cut(s)	211
Psp6I	CCWGG	2 cut(s)	63, 213
PspGI	CCWGG	2 cut(s)	63, 213
PspN4I	GGNNCC	2 cut(s)	70, 308
PspPI	GGNCC	1 cut(s)	211
PspPPI	RGGWCCY	1 cut(s)	211
PsrI	GAACNNNNNNTAC	2 cut(s)	16, 48
PstNI	CAGNNNCTG	1 cut(s)	214
PsuI	RGATCY	1 cut(s)	306
RsaI	GTAC	3 cut(s)	34, 110, 125
RsaNI	GTAC	3 cut(s)	33, 109, 124
RseI	CAYNNNNRTG	1 cut(s)	321
SaqAI	TTAA	2 cut(s)	47, 114
SatI	GCNGC	3 cut(s)	288, 390, 393
Sau3AI	GATC	2 cut(s)	306, 334
Sau96I	GGNCC	1 cut(s)	211
ScrFI	CCNGG	2 cut(s)	65, 215
SetI	ASST	7 cut(s)	114, 216, 354, 364, 391, 429, 453
SfcI	CTRYAG	1 cut(s)	409
SinI	GGWCC	1 cut(s)	211
SmiMI	CAYNNNNRTG	1 cut(s)	321
Sse9I	AATT	3 cut(s)	192, 233, 431
SspMI	CTAG	1 cut(s)	227
StyD4I	CCNGG	2 cut(s)	63, 213
StyI	CCWWGG	1 cut(s)	269
TaaI	ACNGT	1 cut(s)	57
TasI	AATT	3 cut(s)	192, 233, 431
TatI	WGTACW	1 cut(s)	32
Tru1I	TTAA	2 cut(s)	47, 114
Tru9I	TTAA	2 cut(s)	47, 114
TscAI	CASTG	2 cut(s)	60, 337
TseI	GCWGC	3 cut(s)	287, 389, 392
TspDTI	ATGAA	2 cut(s)	252, 435
TspRI	CASTG	2 cut(s)	60, 337
VpaK11BI	GGWCC	1 cut(s)	211
XbaI	TCTAGA	1 cut(s)	226
XceI	RCATGY	1 cut(s)	134
XmiI	GTMKAC	1 cut(s)	135
XspI	CTAG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.