Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0012039

Physical Location & Seq

Genomic Coordinates Forward (+)

7918791 .. 7920654

Gene Structure 1864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G042800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1812 bp

ATGAACTACACGGTGACGCCTAGAATCACATCGCCTGATAGAGATTTTAGTGCCAGTTTTAATGTGGCACAATCCAACTGGCTAATTACCAGGCTTAGCAAAGATGGGAAATTTAGAGAAGCACGCCAAGTGTTTGATGGAATGCCTGACAAAGACGTTGTCACATGGACAACAGTGATCACGGGTTATATCAGATGTGGGATGATGGAGGAGGCTAGGAGTCTGTTTGACAGAGTGGATGCTAAGAAGGATGTGATCACTTGGACTGCGTTGGTCAGTGGGTATATAAGGCTGAAACAAATGAAGGAGGCAGAGAGGTTGTTTTATCAGATGCCGGTGAAGAATGTGGTTTCTTGGAACACCATGATTGATGGGTATGCACGGAATTGTCAGGTTGATATGGCTTTGGAGTTGTTTGAGAGGATGCCAGAGAAGAATGTGGTATCTTGGAATACAGTTTTAACGGCTTTGGCACACTCTGGCAGAATTGAAGAGGCAAGGACGCGTTTTAATTTGATGCCGGAAAGGGATGTTATTTCATGGACAGCAATGGTTGCAGGATTTTCAAGAAATGGCATGATTGATGAAGCTCGAGAATTTTTTGATAGGATGCCTAAAAGGAATGTGGTCTCGTGGAATGCAATGATTACAGGCTACACCCAGAATATGAGATTGGATGAGGCTCTTGAATTGTTTGAGAGGATGCCGGGGAGGGACATGCCATCATGGAATACAATGATTACTGGTTTCATTCAGAATGGGGATTTAAAGCGGGCGCAGGAATTGTTTATTCGAATGCCGCAAAAGAATGTCATCTCTTGGACTACGATGATCACAGGGTATGTACAAGATGGGCAAAATGAAAAAGCATTGATGTTTTTTTCAAAAATGCTGGTGGATAATGGGGTGAAACCGAATCAGGGAACTTTTGTGAGTGTTCTAAGTGCTTGTAGTAACTTAGCTGGTTTCAGTGAGGGGCAACAAATACATCAGATGATAAGTAAAACAGTCCATCATGAATGTGCATTCTTGGTATCAGCACTCATAAACATGTATTCAAAATGTGGGGAGTTAGTCACTGCTAGGAAGATGTTTGACGATGGATTGACAATCCATAGGGATATGGTCTCCTGGAATGGTATGATTGCAGCCTATGCACATCATGGATGTGGTATTGAGGCAATTAACTTGTTTAATGAAATGCGGAAATTAGGGTGCAAACCTGACGATGTTACTTATGTGGGGCTGCTTTCTGCATGCAGCCATGCTGGTTTGGTGGAGGAGGGGCTAAAGTATTTTAATGAGCTTCTTAGAGATGGGTCAATACAAGTGAGAGAAGATCATTACACATGCTTGGTTGATCTCTGTGGTCGGGCAGGGAGGCTCAAAGAAGCTTTTAATGTCCTTGAGAAGCTGGGGACTAAGATATCAGCATCTGTTTGGGGGGCTCTTCTTGCTGGATGTAATGTTCATGGCAACATGGATATTGGGAAGCTGGCTGCAGAGAAGCTTTTAGAGGGGGAGCCAGAGAAAGCAGGCACTTACTTGTTGTTGTGTAACATATATGCTTCATCTGGGAAATGGAGAGAAGCTGCAAAGATAAGGATGAAAATGAAAGAGAAAGGGTTGAAGAAGCAGCCTGGTTGCAGTTGGATAGAAGTTGGAAATAAGGTGCATGTGTTTGTGGTTGGTGATAAGTCTCATTATCAGTCTGAACTTATATATTCTTTAATTTACAATCTACATGAAAGAATGAAGAAGATTGGTTATATACCTTATGATGATCTGACAGTAGATGATAATTTTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

604

Amino Acids

68.44

Weight (kDa)

7.87

Isoelectric Point (pI)

28.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35030
fragaria_vesca	FvH4_7g06880 FvH4_7g06880
prunus_persica	Prupe.7G042800_v2.0.a1
pyrus_communis	pycom12g07780
rosa_chinensis	RchiOBHm_Chr1g0336641 RchiOBHm_Chr1g0336671
rosa_laevigata	RLG00000029341 RLG00000029342
rosa_multiflora	Rmu_co8277885.1_g000001 Rmu_sc0000907.1_g000005 Rmu_sc0000907.1_g000007
rosa_roxburghii	Rroxscaffold_4G00315400
rosa_rugosa	Rorug01G0127400 Rorug04G0097200
rosa_samantha	Rh1AG148300 Rh1BG116300 Rh1CG139700
rosa_wichuraiana	Rw1G011980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	505
AciI	CCGC	3 cut(s)	772, 800, 1204
AcsI	RAATTY	2 cut(s)	110, 596
AcyI	GRCGYC	1 cut(s)	17
AfaI	GTAC	1 cut(s)	846
AfiI	CCNNNNNNNGG	1 cut(s)	920
AflIII	ACRYGT	2 cut(s)	503, 1050
AgsI	TTSAA	6 cut(s)	491, 567, 689, 885, 1059, 1630
AjnI	CCWGG	3 cut(s)	89, 1130, 1639
AjuI	GAANNNNNNNTTGG	2 cut(s)	656, 688
AloI	GAACNNNNNNTCC	2 cut(s)	1452, 1484
AluBI	AGCT	8 cut(s)	590, 962, 1306, 1394, 1414, 1495, 1510, 1592
AluI	AGCT	8 cut(s)	590, 962, 1306, 1394, 1414, 1495, 1510, 1592
Alw26I	GTCTC	3 cut(s)	634, 1132, 1704
AlwNI	CAGNNNCTG	1 cut(s)	1436
Ama87I	CYCGRG	1 cut(s)	591
ApeKI	GCWGC	6 cut(s)	1148, 1246, 1260, 1499, 1592, 1636
ApoI	RAATTY	2 cut(s)	110, 596
ArsI	GACNNNNNNTTYG	2 cut(s)	144, 176
AspLEI	GCGC	1 cut(s)	778
AsuC2I	CCSGG	1 cut(s)	708
AsuHPI	GGTGA	4 cut(s)	25, 349, 919, 1703
AsuII	TTCGAA	1 cut(s)	793
AvaI	CYCGRG	1 cut(s)	591
BanII	GRGCYC	1 cut(s)	1450
BauI	CACGAG	1 cut(s)	631
BbvI	GCAGC	6 cut(s)	1160, 1233, 1272, 1486, 1579, 1648
BccI	CCATC	9 cut(s)	98, 131, 199, 365, 730, 845, 1020, 1094, 1310
BceAI	ACGGC	1 cut(s)	480
BciT130I	CCWGG	3 cut(s)	91, 1132, 1641
BclI	TGATCA	3 cut(s)	177, 255, 831
BcnI	CCSGG	1 cut(s)	708
BcoDI	GTCTC	3 cut(s)	634, 1132, 1704
BfaI	CTAG	3 cut(s)	21, 216, 1083
BfmI	CTRYAG	1 cut(s)	1500
BisI	GCNGC	7 cut(s)	800, 1149, 1247, 1261, 1500, 1593, 1637
BlpI	GCTNAGC	1 cut(s)	95
BlsI	GCNGC	7 cut(s)	801, 1150, 1248, 1262, 1501, 1594, 1638
Bme1390I	CCNGG	4 cut(s)	91, 708, 1132, 1641
BmeT110I	CYCGRG	1 cut(s)	591
BmiI	GGNNCC	1 cut(s)	1524
BmrFI	CCNGG	4 cut(s)	91, 708, 1132, 1641
BmsI	GCATC	7 cut(s)	229, 321, 414, 507, 600, 693, 1442
Bpu1102I	GCTNAGC	1 cut(s)	95
Bpu14I	TTCGAA	1 cut(s)	793
BpuEI	CTTGAG	1 cut(s)	1427
BpuMI	CCSGG	1 cut(s)	708
BsaHI	GRCGYC	1 cut(s)	17
BsaI	GGTCTC	2 cut(s)	634, 1132
BsaJI	CCNNGG	1 cut(s)	707
Bsc4I	CCNNNNNNNGG	1 cut(s)	920
Bse118I	RCCGGY	1 cut(s)	334
Bse1I	ACTGG	3 cut(s)	54, 83, 748
Bse3DI	GCAATG	2 cut(s)	555, 648
BseBI	CCWGG	3 cut(s)	91, 1132, 1641
BseDI	CCNNGG	1 cut(s)	707
BseLI	CCNNNNNNNGG	1 cut(s)	920
BseMI	GCAATG	2 cut(s)	555, 648
BseNI	ACTGG	3 cut(s)	54, 83, 748
BseRI	GAGGAG	2 cut(s)	224, 1295
BseXI	GCAGC	6 cut(s)	1160, 1233, 1272, 1486, 1579, 1648
BseYI	CCCAGC	1 cut(s)	1414
Bsh1236I	CGCG	1 cut(s)	505
BsiHKCI	CYCGRG	1 cut(s)	591
BsiSI	CCGG	3 cut(s)	335, 521, 707
BslFI	GGGAC	2 cut(s)	728, 1432
BslI	CCNNNNNNNGG	1 cut(s)	920
BsmAI	GTCTC	3 cut(s)	634, 1132, 1704
BsmFI	GGGAC	2 cut(s)	728, 1432
BsmI	GAATGC	4 cut(s)	147, 643, 801, 1025
Bso31I	GGTCTC	2 cut(s)	634, 1132
BsoBI	CYCGRG	1 cut(s)	591
Bsp119I	TTCGAA	1 cut(s)	793
Bsp1286I	GDGCHC	1 cut(s)	1450
Bsp1407I	TGTACA	1 cut(s)	844
Bsp143I	GATC	6 cut(s)	177, 255, 831, 1339, 1360, 1783
Bsp1720I	GCTNAGC	1 cut(s)	95
BspACI	CCGC	3 cut(s)	772, 800, 1204
BspFNI	CGCG	1 cut(s)	505
BspHI	TCATGA	2 cut(s)	1015, 1808
BspLI	GGNNCC	1 cut(s)	1524
BspMAI	CTGCAG	1 cut(s)	1504
BspQI	GCTCTTC	1 cut(s)	1455
BspT104I	TTCGAA	1 cut(s)	793
BspTNI	GGTCTC	2 cut(s)	634, 1132
BsrDI	GCAATG	2 cut(s)	555, 648
BsrFI	RCCGGY	1 cut(s)	334
BsrGI	TGTACA	1 cut(s)	844
BsrI	ACTGG	3 cut(s)	54, 83, 748
BssAI	RCCGGY	1 cut(s)	334
BssECI	CCNNGG	1 cut(s)	707
BssMI	GATC	6 cut(s)	177, 255, 831, 1339, 1360, 1783
BssNI	GRCGYC	1 cut(s)	17
BssSI	CACGAG	1 cut(s)	631
Bst2BI	CACGAG	1 cut(s)	631
Bst2UI	CCWGG	3 cut(s)	91, 1132, 1641
Bst4CI	ACNGT	5 cut(s)	13, 175, 457, 1009, 1792
Bst6I	CTCTTC	2 cut(s)	486, 1455
BstACI	GRCGYC	1 cut(s)	17
BstAPI	GCANNNNNTGC	2 cut(s)	554, 1154
BstAUI	TGTACA	1 cut(s)	844
BstBI	TTCGAA	1 cut(s)	793
BstC8I	GCNNGC	5 cut(s)	124, 774, 1258, 1497, 1537
BstDEI	CTNAG	6 cut(s)	95, 243, 941, 958, 1310, 1422
BstFNI	CGCG	1 cut(s)	505
BstHHI	GCGC	1 cut(s)	778
BstKTI	GATC	6 cut(s)	180, 258, 834, 1342, 1363, 1786
BstMAI	GTCTC	3 cut(s)	634, 1132, 1704
BstMBI	GATC	6 cut(s)	177, 255, 831, 1339, 1360, 1783
BstMWI	GCNNNNNNNGC	3 cut(s)	554, 1154, 1454
BstNI	CCWGG	3 cut(s)	91, 1132, 1641
BstNSI	RCATGY	5 cut(s)	721, 1054, 1260, 1353, 1679
BstSCI	CCNGG	4 cut(s)	89, 706, 1130, 1639
BstSFI	CTRYAG	1 cut(s)	1500
BstUI	CGCG	1 cut(s)	505
BstV1I	GCAGC	6 cut(s)	1160, 1233, 1272, 1486, 1579, 1648
BtgZI	GCGATG	1 cut(s)	15
BtsI	GCAGTG	1 cut(s)	1077
BtsIMutI	CAGTG	4 cut(s)	180, 283, 976, 1077
Cac8I	GCNNGC	5 cut(s)	124, 774, 1258, 1497, 1537
CaiI	CAGNNNCTG	1 cut(s)	1436
CciI	TCATGA	2 cut(s)	1015, 1808
CfoI	GCGC	1 cut(s)	778
Cfr10I	RCCGGY	1 cut(s)	334
CseI	GACGC	2 cut(s)	25, 511
Csp6I	GTAC	1 cut(s)	845
CviQI	GTAC	1 cut(s)	845
DdeI	CTNAG	6 cut(s)	95, 243, 941, 958, 1310, 1422
DpnI	GATC	6 cut(s)	179, 257, 833, 1341, 1362, 1785
DpnII	GATC	6 cut(s)	177, 255, 831, 1339, 1360, 1783
DraI	TTTAAA	1 cut(s)	768
Eam1104I	CTCTTC	2 cut(s)	486, 1455
EarI	CTCTTC	2 cut(s)	486, 1455
Eco24I	GRGCYC	1 cut(s)	1450
Eco31I	GGTCTC	2 cut(s)	634, 1132
Eco32I	GATATC	1 cut(s)	1428
Eco88I	CYCGRG	1 cut(s)	591
EcoRII	CCWGG	3 cut(s)	89, 1130, 1639
EcoRV	GATATC	1 cut(s)	1428
EcoT38I	GRGCYC	1 cut(s)	1450
FaqI	GGGAC	2 cut(s)	728, 1432
FauI	CCCGC	1 cut(s)	765
FbaI	TGATCA	3 cut(s)	177, 255, 831
Fnu4HI	GCNGC	7 cut(s)	800, 1149, 1247, 1261, 1500, 1593, 1637
FriOI	GRGCYC	1 cut(s)	1450
Fsp4HI	GCNGC	7 cut(s)	800, 1149, 1247, 1261, 1500, 1593, 1637
FspBI	CTAG	3 cut(s)	21, 216, 1083
GlaI	GCGC	1 cut(s)	777
GluI	GCNGC	7 cut(s)	800, 1149, 1247, 1261, 1500, 1593, 1637
GsaI	CCCAGC	1 cut(s)	1418
HapII	CCGG	3 cut(s)	335, 521, 707
HgaI	GACGC	2 cut(s)	25, 511
HhaI	GCGC	1 cut(s)	778
Hin1I	GRCGYC	1 cut(s)	17
Hin6I	GCGC	1 cut(s)	776
HinP1I	GCGC	1 cut(s)	776
HindIII	AAGCTT	2 cut(s)	1392, 1508
HinfI	GANTC	3 cut(s)	24, 220, 916
HpaII	CCGG	3 cut(s)	335, 521, 707
HphI	GGTGA	4 cut(s)	25, 349, 919, 1703
Hpy188I	TCNGA	6 cut(s)	194, 330, 756, 993, 1714, 1788
Hpy188III	TCNNGA	5 cut(s)	567, 593, 686, 1016, 1809
HpyAV	CCTTC	2 cut(s)	241, 298
HpyCH4III	ACNGT	5 cut(s)	13, 175, 457, 1009, 1792
HpyCH4IV	ACGT	1 cut(s)	156
HpyF10VI	GCNNNNNNNGC	3 cut(s)	554, 1154, 1454
HpyF3I	CTNAG	6 cut(s)	95, 243, 941, 958, 1310, 1422
HpySE526I	ACGT	1 cut(s)	156
Hsp92I	GRCGYC	1 cut(s)	17
HspAI	GCGC	1 cut(s)	776
Ksp22I	TGATCA	3 cut(s)	177, 255, 831
Kzo9I	GATC	6 cut(s)	177, 255, 831, 1339, 1360, 1783
LguI	GCTCTTC	1 cut(s)	1455
LmnI	GCTCC	1 cut(s)	1522
Lsp1109I	GCAGC	6 cut(s)	1160, 1233, 1272, 1486, 1579, 1648
LweI	GCATC	7 cut(s)	229, 321, 414, 507, 600, 693, 1442
MaeI	CTAG	3 cut(s)	21, 216, 1083
MaeII	ACGT	1 cut(s)	156
MaeIII	GTNAC	6 cut(s)	13, 160, 953, 1075, 1231, 1556
MalI	GATC	6 cut(s)	179, 257, 833, 1341, 1362, 1785
MboI	GATC	6 cut(s)	177, 255, 831, 1339, 1360, 1783
MboII	GAAGA	9 cut(s)	352, 445, 503, 1099, 1349, 1442, 1642, 1768, 1771
MhlI	GDGCHC	1 cut(s)	1450
MluI	ACGCGT	1 cut(s)	503
MlyI	GAGTC	1 cut(s)	229
MmeI	TCCRAC	3 cut(s)	99, 1631, 1642
MseI	TTAA	9 cut(s)	60, 461, 510, 767, 1185, 1194, 1299, 1398, 1730
MslI	CAYNNNNRTG	3 cut(s)	1020, 1049, 1167
MspI	CCGG	3 cut(s)	335, 521, 707
MspR9I	CCNGG	4 cut(s)	91, 708, 1132, 1641
Mva1269I	GAATGC	4 cut(s)	147, 643, 801, 1025
MvaI	CCWGG	3 cut(s)	91, 1132, 1641
MvnI	CGCG	1 cut(s)	505
MwoI	GCNNNNNNNGC	3 cut(s)	554, 1154, 1454
NciI	CCSGG	1 cut(s)	708
NdeII	GATC	6 cut(s)	177, 255, 831, 1339, 1360, 1783
NlaIV	GGNNCC	1 cut(s)	1524
NmuCI	GTSAC	3 cut(s)	13, 160, 1075
NspI	RCATGY	5 cut(s)	721, 1054, 1260, 1353, 1679
NspV	TTCGAA	1 cut(s)	793
PaeI	GCATGC	1 cut(s)	1260
PaeR7I	CTCGAG	1 cut(s)	591
PagI	TCATGA	2 cut(s)	1015, 1808
PciI	ACATGT	1 cut(s)	1050
PciSI	GCTCTTC	1 cut(s)	1455
PctI	GAATGC	4 cut(s)	147, 643, 801, 1025
PfeI	GAWTC	2 cut(s)	24, 916
PflFI	GACNNNGTC	1 cut(s)	158
PfoI	TCCNGGA	1 cut(s)	1130
PkrI	GCNGC	7 cut(s)	801, 1150, 1248, 1262, 1501, 1594, 1638
PleI	GAGTC	1 cut(s)	228
PpsI	GAGTC	1 cut(s)	228
PscI	ACATGT	1 cut(s)	1050
Psp6I	CCWGG	3 cut(s)	89, 1130, 1639
PspFI	CCCAGC	1 cut(s)	1414
PspGI	CCWGG	3 cut(s)	89, 1130, 1639
PspN4I	GGNNCC	1 cut(s)	1524
PstI	CTGCAG	1 cut(s)	1504
PstNI	CAGNNNCTG	1 cut(s)	1436
PsyI	GACNNNGTC	1 cut(s)	158
RsaI	GTAC	1 cut(s)	846
RsaNI	GTAC	1 cut(s)	845
RseI	CAYNNNNRTG	3 cut(s)	1020, 1049, 1167
SapI	GCTCTTC	1 cut(s)	1455
SaqAI	TTAA	9 cut(s)	60, 461, 510, 767, 1185, 1194, 1299, 1398, 1730
SatI	GCNGC	7 cut(s)	800, 1149, 1247, 1261, 1500, 1593, 1637
Sau3AI	GATC	6 cut(s)	177, 255, 831, 1339, 1360, 1783
SchI	GAGTC	1 cut(s)	229
ScrFI	CCNGG	4 cut(s)	91, 708, 1132, 1641
SduI	GDGCHC	1 cut(s)	1450
SfaNI	GCATC	7 cut(s)	229, 321, 414, 507, 600, 693, 1442
SfcI	CTRYAG	1 cut(s)	1500
Sfr274I	CTCGAG	1 cut(s)	591
SfuI	TTCGAA	1 cut(s)	793
SlaI	CTCGAG	1 cut(s)	591
SmiMI	CAYNNNNRTG	3 cut(s)	1020, 1049, 1167
SmlI	CTYRAG	2 cut(s)	591, 1406
SmoI	CTYRAG	2 cut(s)	591, 1406
SphI	GCATGC	1 cut(s)	1260
SsiI	CCGC	3 cut(s)	772, 800, 1204
SspMI	CTAG	3 cut(s)	21, 216, 1083
StyD4I	CCNGG	4 cut(s)	89, 706, 1130, 1639
TaaI	ACNGT	5 cut(s)	13, 175, 457, 1009, 1792
TaiI	ACGT	1 cut(s)	159
TaqI	TCGA	2 cut(s)	592, 793
TatI	WGTACW	1 cut(s)	844
TauI	GCSGC	1 cut(s)	802
TfiI	GAWTC	2 cut(s)	24, 916
Tru1I	TTAA	9 cut(s)	60, 461, 510, 767, 1185, 1194, 1299, 1398, 1730
Tru9I	TTAA	9 cut(s)	60, 461, 510, 767, 1185, 1194, 1299, 1398, 1730
TscAI	CASTG	4 cut(s)	180, 283, 976, 1084
TseFI	GTSAC	3 cut(s)	13, 160, 1075
TseI	GCWGC	6 cut(s)	1148, 1246, 1260, 1499, 1592, 1636
Tsp45I	GTSAC	3 cut(s)	13, 160, 1075
TspGWI	ACGGA	1 cut(s)	397
TspRI	CASTG	4 cut(s)	180, 283, 976, 1084
Tth111I	GACNNNGTC	1 cut(s)	158
XapI	RAATTY	2 cut(s)	110, 596
XceI	RCATGY	5 cut(s)	721, 1054, 1260, 1353, 1679
XcmI	CCANNNNNNNNNTGG	2 cut(s)	61, 134
XhoI	CTCGAG	1 cut(s)	591
XspI	CTAG	3 cut(s)	21, 216, 1083

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.