Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0012039

Physical Location & Seq

Genomic Coordinates Forward (+)

39686603 .. 39694424

Gene Structure 7822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00315400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1902 bp

ATGACACATGTTATGAATAGAGCCAGATTACCACTCTTGAGTTTTGGTCAAGCTCTGCGTACTCCCAGACTTGCATACCACTCCATGACCCAGAAAGCCTCACCCAGAATCACAATGCCGGACAGAGACTACAGTGCCAGCTCCGACGTGGCCAAGTCCAACTGGCTGATCACGAAGTTCAGCAGAGACGGCAAAGTTGGAGAAGCCCGCCAAGTGTTCGACGAAATGGCTGAGAGAGACGTGGTGACGTGGACGACGGTGATCACGGGGTACATCAAGTGCGGGATGGTGGAGGAGGCCAGGAGGCTGTTTGATAGACCCGATGCTGAGAAGAATGTCATCACTTGGACTGCCTTGGTTGGCGGGTATATAAGGCTGAGACGGATTAAGGAGGCTGAGTGGTTGTTCTATCAAATGCCGGTCAGGAATGTGGTTTCTTGGAACACTATGATTGATGGGTACGCGAGGAGCCGGCAGGTTGATCAGGCGTTGGAGTTGTTTGAGAGGATGCCGGAGAGGAATGTGGTTTCTTGGAACACGGTTTTGTCGGCTCTAGCGCAATGCGGGAGGATTAAGGAGGCCAGGAGGCTGTTTGGTTTGATGCCAGAAAGGGATGTTATTTCGTGGACCGCAATGGTTGCGGGGTTTTCAAGAAATGGCAGGATCGATGAAGCTAGAGAAGTTTTTGATAGGATGCCGAGAAGGAATGTGGTGTCGTGGAATGCAATGATCACGGGTTATGCTCAGAATGGGAGGCTGGAGGAGGCTCTTGAACTGTTTCAGAGGATGCCGGAGAGGGACATGCCTTCGTGGAATACGATGGTTACTGGCTTTATTCAGAACGGGGATTTAAAGCGGGCGTGGGACTTGTTTATTCAAATGCCACAGAAGAATGTCATATCATGGACTACAATGATCACTGGGTATGTACAAGATGGGAGAAATGAAGATGCATTGATGATCTTTTCGAAAATGGTGGCTGATAATGGGGTGAGACCTAATCAGGGAACTTTTGTCAGTATCTTGAGTGCTTGTAGTAACTTAGCTGGTCTTTGTGAGGGACGTCAAATACATCAGATGATAACTAAAACAGTTTATCAGGAATGTGTACATTTGGTGTCTGCACTCATAAACATGTATTCAAAATGTGGTGAGTTAGTCTCTGCTAGGAAGATGTTTGAAGATGGATCGACAATCCATAGGGATTTTATCTCCTGGAATGGAATGATTGCAGCCTATGCACATCATGGATGTGGTATTGAGGCAATTAACTTGTATAATGAAATGCGGCAATTGGGGTGCAAACCTGATGATGTTACTTATGTGGGGCTGCTGTCTGCATGCAGCCATGCTGGTTTGGTGGAGGAGGGACTAAATCTTTTTGATGAGCTTCTTAGAGATGGGTCAATACAAGTGAGGGAAGATCACTACACTTGCTTAGTTGATCTTTGTGGTCGAGCAGGGAGGCTGAAGGAGGCTTTTGATATCCTTGAGAAGCTTGGGACCAACCCATCAGCATCTAATTGGGGGGCTCTTCTTGCTGGATGTATCGATCATCGTAACATGGATACTGGGAAGCTAGCTGCAGAGAAGCTTTTAAAGGAGGGACCAGATGATGCAGGAAGTTACTCGTTGTTGTGGAACTTTTATGCTAGATCTGGGAATTGGAGAGAAGCTGCAAAGATGAGGATTAAAATGAAAGAGAAGGGGTTGAAAAAGCAGCCTGGTTGCAGTTGGATAGAAGTTGGAAATATGGTGCATGTGTTTGTGGTCGGTGATAACTCTCATTGCCAATCTCAACTTATATATACTGCACTTCACGATTTACATAAACAAATGAAGAAGATTGGGTATGTACCAAGAAATGATTTGAATGTAGATGAAGATTTTTCAATTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

633

Amino Acids

71.9

Weight (kDa)

8.11

Isoelectric Point (pI)

34.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	79 - 105	4.3e-06	PPR repeat family
PPR	PF01535	82 - 106	4e-06	PPR repeat
PPR_1	PF12854	142 - 170	8.8e-08	PPR repeat
PPR_2	PF13041	142 - 175	1.6e-09	PPR repeat family
PPR	PF01535	145 - 175	1.2e-09	PPR repeat
PPR_2	PF13041	173 - 205	7.8e-06	PPR repeat family
PPR	PF01535	176 - 205	2.5e-06	PPR repeat
PPR_2	PF13041	204 - 237	3.2e-06	PPR repeat family
PPR_1	PF12854	204 - 232	1.6e-06	PPR repeat
PPR	PF01535	207 - 237	5.5e-08	PPR repeat
PPR_2	PF13041	235 - 268	4.2e-09	PPR repeat family
PPR_1	PF12854	236 - 263	9.9e-08	PPR repeat
PPR	PF01535	238 - 267	1e-10	PPR repeat
PPR_2	PF13041	269 - 299	6.6e-06	PPR repeat family
PPR_2	PF13041	297 - 346	2.4e-10	PPR repeat family
PPR_3	PF13812	297 - 346	4.4e-06	Pentatricopeptide repeat domain
PPR	PF01535	300 - 327	2.9e-06	PPR repeat
PPR_2	PF13041	402 - 449	4.8e-12	PPR repeat family
PPR	PF01535	404 - 434	2.4e-07	PPR repeat
E_motif	PF20431	519 - 581	8e-18	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0012039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35030
fragaria_vesca	FvH4_7g06880 FvH4_7g06880
prunus_persica	Prupe.7G042800_v2.0.a1
pyrus_communis	pycom12g07780
rosa_chinensis	RchiOBHm_Chr1g0336641 RchiOBHm_Chr1g0336671
rosa_laevigata	RLG00000029341 RLG00000029342
rosa_multiflora	Rmu_co8277885.1_g000001 Rmu_sc0000907.1_g000005 Rmu_sc0000907.1_g000007
rosa_roxburghii	Rroxscaffold_4G00315400
rosa_rugosa	Rorug01G0127400 Rorug04G0097200
rosa_samantha	Rh1AG148300 Rh1BG116300 Rh1CG139700
rosa_wichuraiana	Rw1G011980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1066
Acc36I	ACCTGC	1 cut(s)	466
AccII	CGCG	1 cut(s)	464
AciI	CCGC	8 cut(s)	208, 282, 363, 564, 630, 641, 856, 1288
AclWI	GGATC	2 cut(s)	671, 1195
AcoI	YGGCCR	1 cut(s)	150
AcuI	CTGAAG	1 cut(s)	1490
AcyI	GRCGYC	1 cut(s)	1063
AfaI	GTAC	6 cut(s)	61, 272, 461, 930, 1110, 1857
AfiI	CCNNNNNNNGG	1 cut(s)	1004
AflIII	ACRYGT	2 cut(s)	7, 1134
AgsI	TTSAA	8 cut(s)	651, 773, 878, 1143, 1181, 1714, 1873, 1893
AjiI	CACGTC	3 cut(s)	148, 241, 249
AjnI	CCWGG	4 cut(s)	299, 581, 1214, 1723
Alw26I	GTCTC	6 cut(s)	120, 180, 231, 373, 988, 1165
AlwI	GGATC	2 cut(s)	671, 1195
AoxI	GGCC	3 cut(s)	150, 297, 579
ApeKI	GCWGC	6 cut(s)	1232, 1330, 1344, 1583, 1676, 1720
Asp700I	GAANNNNTTC	1 cut(s)	777
AspLEI	GCGC	1 cut(s)	559
AspS9I	GGNCC	3 cut(s)	627, 1503, 1607
AsuHPI	GGTGA	6 cut(s)	93, 256, 271, 1003, 1163, 1787
AsuII	TTCGAA	1 cut(s)	968
AsuNHI	GCTAGC	1 cut(s)	1579
AvaII	GGWCC	3 cut(s)	627, 1503, 1607
BalI	TGGCCA	1 cut(s)	152
BanII	GRGCYC	1 cut(s)	1534
BbvI	GCAGC	6 cut(s)	1244, 1317, 1356, 1570, 1663, 1732
BccI	CCATC	7 cut(s)	280, 449, 814, 929, 1178, 1394, 1519
BceAI	ACGGC	1 cut(s)	205
BciT130I	CCWGG	4 cut(s)	301, 583, 1216, 1725
BciVI	GTATCC	1 cut(s)	1561
BclI	TGATCA	5 cut(s)	168, 261, 481, 729, 915
BcoDI	GTCTC	6 cut(s)	120, 180, 231, 373, 988, 1165
BfaI	CTAG	5 cut(s)	554, 675, 1167, 1580, 1653
BfmI	CTRYAG	2 cut(s)	130, 1584
BfuAI	ACCTGC	1 cut(s)	466
BfuI	GTATCC	1 cut(s)	1561
BglII	AGATCT	1 cut(s)	1655
BisI	GCNGC	7 cut(s)	1233, 1289, 1331, 1345, 1584, 1677, 1721
BlsI	GCNGC	7 cut(s)	1234, 1290, 1332, 1346, 1585, 1678, 1722
Bme1390I	CCNGG	4 cut(s)	301, 583, 1216, 1725
Bme18I	GGWCC	3 cut(s)	627, 1503, 1607
BmgBI	CACGTC	3 cut(s)	148, 241, 249
BmgT120I	GGNCC	3 cut(s)	627, 1503, 1607
BmiI	GGNNCC	3 cut(s)	470, 1504, 1608
BmrFI	CCNGG	4 cut(s)	301, 583, 1216, 1725
BmrI	ACTGGG	2 cut(s)	930, 1581
BmsI	GCATC	8 cut(s)	313, 498, 591, 684, 777, 940, 1526, 1606
BmtI	GCTAGC	1 cut(s)	1583
BmuI	ACTGGG	2 cut(s)	930, 1581
BplI	GAGNNNNNCTC	2 cut(s)	1145, 1177
BpmI	CTGGAG	1 cut(s)	779
Bpu14I	TTCGAA	1 cut(s)	968
BpuEI	CTTGAG	3 cut(s)	58, 1045, 1511
Bsa29I	ATCGAT	2 cut(s)	666, 1551
BsaHI	GRCGYC	1 cut(s)	1063
BsaI	GGTCTC	1 cut(s)	988
BsaJI	CCNNGG	1 cut(s)	354
BsaXI	ACNNNNNCTCC	2 cut(s)	383, 413
Bsc4I	CCNNNNNNNGG	1 cut(s)	1004
Bse118I	RCCGGY	2 cut(s)	418, 471
Bse1I	ACTGG	4 cut(s)	167, 832, 925, 1576
Bse3DI	GCAATG	4 cut(s)	566, 639, 732, 1786
BseBI	CCWGG	4 cut(s)	301, 583, 1216, 1725
BseCI	ATCGAT	2 cut(s)	666, 1551
BseDI	CCNNGG	1 cut(s)	354
BseGI	GGATG	7 cut(s)	291, 513, 619, 699, 792, 1256, 1550
BseLI	CCNNNNNNNGG	1 cut(s)	1004
BseMI	GCAATG	4 cut(s)	566, 639, 732, 1786
BseMII	CTCAG	5 cut(s)	222, 318, 368, 387, 758
BseNI	ACTGG	4 cut(s)	167, 832, 925, 1576
BseRI	GAGGAG	4 cut(s)	308, 481, 776, 1379
BseXI	GCAGC	6 cut(s)	1244, 1317, 1356, 1570, 1663, 1732
BsgI	GTGCAG	2 cut(s)	1107, 1797
Bsh1236I	CGCG	1 cut(s)	464
BshFI	GGCC	3 cut(s)	152, 299, 581
BshVI	ATCGAT	2 cut(s)	666, 1551
BsiSI	CCGG	5 cut(s)	119, 419, 472, 512, 791
BslFI	GGGAC	6 cut(s)	812, 878, 1074, 1383, 1516, 1620
BslI	CCNNNNNNNGG	1 cut(s)	1004
BsmAI	GTCTC	6 cut(s)	120, 180, 231, 373, 988, 1165
BsmBI	CGTCTC	3 cut(s)	180, 231, 373
BsmFI	GGGAC	6 cut(s)	812, 878, 1074, 1383, 1516, 1620
BsmI	GAATGC	1 cut(s)	727
BsnI	GGCC	3 cut(s)	152, 299, 581
Bso31I	GGTCTC	1 cut(s)	988
Bsp119I	TTCGAA	1 cut(s)	968
Bsp1286I	GDGCHC	1 cut(s)	1534
Bsp1407I	TGTACA	2 cut(s)	928, 1108
BspACI	CCGC	8 cut(s)	208, 282, 363, 564, 630, 641, 856, 1288
BspANI	GGCC	3 cut(s)	152, 299, 581
BspCNI	CTCAG	5 cut(s)	223, 319, 369, 388, 757
BspDI	ATCGAT	2 cut(s)	666, 1551
BspFNI	CGCG	1 cut(s)	464
BspLI	GGNNCC	3 cut(s)	470, 1504, 1608
BspMAI	CTGCAG	1 cut(s)	1588
BspMI	ACCTGC	1 cut(s)	466
BspOI	GCTAGC	1 cut(s)	1583
BspPI	GGATC	2 cut(s)	671, 1195
BspQI	GCTCTTC	1 cut(s)	1539
BspT104I	TTCGAA	1 cut(s)	968
BspTNI	GGTCTC	1 cut(s)	988
BsrDI	GCAATG	4 cut(s)	566, 639, 732, 1786
BsrFI	RCCGGY	2 cut(s)	418, 471
BsrGI	TGTACA	2 cut(s)	928, 1108
BsrI	ACTGG	4 cut(s)	167, 832, 925, 1576
BssAI	RCCGGY	2 cut(s)	418, 471
BssECI	CCNNGG	1 cut(s)	354
BssNI	GRCGYC	1 cut(s)	1063
BssT1I	CCWWGG	1 cut(s)	354
Bst2UI	CCWGG	4 cut(s)	301, 583, 1216, 1725
Bst4CI	ACNGT	5 cut(s)	134, 259, 541, 777, 1093
Bst6I	CTCTTC	1 cut(s)	1539
BstACI	GRCGYC	1 cut(s)	1063
BstAPI	GCANNNNNTGC	2 cut(s)	638, 1238
BstAUI	TGTACA	2 cut(s)	928, 1108
BstBI	TTCGAA	1 cut(s)	968
BstC8I	GCNNGC	6 cut(s)	139, 208, 473, 858, 1342, 1581
BstDEI	CTNAG	8 cut(s)	231, 327, 377, 396, 744, 1042, 1394, 1438
BstF5I	GGATG	7 cut(s)	291, 513, 619, 699, 792, 1256, 1550
BstFNI	CGCG	1 cut(s)	464
BstHHI	GCGC	1 cut(s)	559
BstMAI	GTCTC	6 cut(s)	120, 180, 231, 373, 988, 1165
BstMWI	GCNNNNNNNGC	4 cut(s)	189, 638, 1238, 1538
BstNI	CCWGG	4 cut(s)	301, 583, 1216, 1725
BstNSI	RCATGY	5 cut(s)	11, 805, 1138, 1344, 1763
BstSCI	CCNGG	4 cut(s)	299, 581, 1214, 1723
BstSFI	CTRYAG	2 cut(s)	130, 1584
BstUI	CGCG	1 cut(s)	464
BstV1I	GCAGC	6 cut(s)	1244, 1317, 1356, 1570, 1663, 1732
BstX2I	RGATCY	1 cut(s)	1655
BstYI	RGATCY	1 cut(s)	1655
Bsu15I	ATCGAT	2 cut(s)	666, 1551
BsuI	GTATCC	1 cut(s)	1561
BsuRI	GGCC	3 cut(s)	152, 299, 581
BsuTUI	ATCGAT	2 cut(s)	666, 1551
BtrI	CACGTC	3 cut(s)	148, 241, 249
BtsCI	GGATG	7 cut(s)	291, 513, 619, 699, 792, 1256, 1550
BtsIMutI	CAGTG	2 cut(s)	139, 918
BveI	ACCTGC	1 cut(s)	466
Cac8I	GCNNGC	6 cut(s)	139, 208, 473, 858, 1342, 1581
CfoI	GCGC	1 cut(s)	559
Cfr10I	RCCGGY	2 cut(s)	418, 471
Cfr13I	GGNCC	3 cut(s)	627, 1503, 1607
ClaI	ATCGAT	2 cut(s)	666, 1551
Csp6I	GTAC	6 cut(s)	60, 271, 460, 929, 1109, 1856
CviQI	GTAC	6 cut(s)	60, 271, 460, 929, 1109, 1856
DdeI	CTNAG	8 cut(s)	231, 327, 377, 396, 744, 1042, 1394, 1438
DraI	TTTAAA	2 cut(s)	852, 1599
EaeI	YGGCCR	1 cut(s)	150
Eam1104I	CTCTTC	1 cut(s)	1539
EarI	CTCTTC	1 cut(s)	1539
Eco130I	CCWWGG	1 cut(s)	354
Eco24I	GRGCYC	1 cut(s)	1534
Eco31I	GGTCTC	1 cut(s)	988
Eco32I	GATATC	1 cut(s)	1486
Eco47I	GGWCC	3 cut(s)	627, 1503, 1607
Eco57I	CTGAAG	1 cut(s)	1490
EcoRII	CCWGG	4 cut(s)	299, 581, 1214, 1723
EcoRV	GATATC	1 cut(s)	1486
EcoT14I	CCWWGG	1 cut(s)	354
EcoT22I	ATGCAT	1 cut(s)	955
EcoT38I	GRGCYC	1 cut(s)	1534
ErhI	CCWWGG	1 cut(s)	354
Esp3I	CGTCTC	3 cut(s)	180, 231, 373
FaqI	GGGAC	6 cut(s)	812, 878, 1074, 1383, 1516, 1620
FauI	CCCGC	6 cut(s)	215, 275, 356, 557, 634, 849
FbaI	TGATCA	5 cut(s)	168, 261, 481, 729, 915
Fnu4HI	GCNGC	7 cut(s)	1233, 1289, 1331, 1345, 1584, 1677, 1721
FokI	GGATG	7 cut(s)	298, 520, 626, 706, 799, 1263, 1557
FriOI	GRGCYC	1 cut(s)	1534
Fsp4HI	GCNGC	7 cut(s)	1233, 1289, 1331, 1345, 1584, 1677, 1721
FspBI	CTAG	5 cut(s)	554, 675, 1167, 1580, 1653
GlaI	GCGC	1 cut(s)	558
GluI	GCNGC	7 cut(s)	1233, 1289, 1331, 1345, 1584, 1677, 1721
GsuI	CTGGAG	1 cut(s)	779
HaeIII	GGCC	3 cut(s)	152, 299, 581
HapII	CCGG	5 cut(s)	119, 419, 472, 512, 791
HhaI	GCGC	1 cut(s)	559
Hin1I	GRCGYC	1 cut(s)	1063
Hin6I	GCGC	1 cut(s)	557
HinP1I	GCGC	1 cut(s)	557
HindIII	AAGCTT	2 cut(s)	1496, 1592
HinfI	GANTC	1 cut(s)	108
HpaII	CCGG	5 cut(s)	119, 419, 472, 512, 791
HphI	GGTGA	6 cut(s)	93, 256, 271, 1003, 1163, 1787
Hpy166II	GTNNAC	3 cut(s)	252, 627, 1109
Hpy188I	TCNGA	5 cut(s)	145, 747, 783, 840, 1077
Hpy188III	TCNNGA	8 cut(s)	37, 172, 424, 651, 770, 1024, 1100, 1820
Hpy8I	GTNNAC	3 cut(s)	252, 627, 1109
Hpy99I	CGWCG	3 cut(s)	149, 224, 259
HpyAV	CCTTC	4 cut(s)	696, 816, 1465, 1699
HpyCH4III	ACNGT	5 cut(s)	134, 259, 541, 777, 1093
HpyCH4IV	ACGT	4 cut(s)	147, 240, 248, 1063
HpyF10VI	GCNNNNNNNGC	4 cut(s)	189, 638, 1238, 1538
HpyF3I	CTNAG	8 cut(s)	231, 327, 377, 396, 744, 1042, 1394, 1438
HpySE526I	ACGT	4 cut(s)	147, 240, 248, 1063
Hsp92I	GRCGYC	1 cut(s)	1063
HspAI	GCGC	1 cut(s)	557
KroI	GCCGGC	1 cut(s)	471
KroNI	GCCGGC	1 cut(s)	473
Ksp22I	TGATCA	5 cut(s)	168, 261, 481, 729, 915
LguI	GCTCTTC	1 cut(s)	1539
LmnI	GCTCC	2 cut(s)	146, 468
Lsp1109I	GCAGC	6 cut(s)	1244, 1317, 1356, 1570, 1663, 1732
LweI	GCATC	8 cut(s)	313, 498, 591, 684, 777, 940, 1526, 1606
MaeI	CTAG	5 cut(s)	554, 675, 1167, 1580, 1653
MaeII	ACGT	4 cut(s)	147, 240, 248, 1063
MaeIII	GTNAC	6 cut(s)	244, 823, 1037, 1315, 1559, 1625
MfeI	CAATTG	1 cut(s)	1292
MflI	RGATCY	1 cut(s)	1655
MhlI	GDGCHC	1 cut(s)	1534
MlsI	TGGCCA	1 cut(s)	152
MluCI	AATT	5 cut(s)	1266, 1292, 1522, 1663, 1893
MluNI	TGGCCA	1 cut(s)	152
MmeI	TCCRAC	6 cut(s)	168, 178, 183, 471, 1715, 1726
Mox20I	TGGCCA	1 cut(s)	152
Mph1103I	ATGCAT	1 cut(s)	955
MroNI	GCCGGC	1 cut(s)	471
MroXI	GAANNNNTTC	1 cut(s)	777
MscI	TGGCCA	1 cut(s)	152
MseI	TTAA	6 cut(s)	387, 573, 851, 1269, 1598, 1692
MslI	CAYNNNNRTG	2 cut(s)	1133, 1251
Msp20I	TGGCCA	1 cut(s)	152
MspI	CCGG	5 cut(s)	119, 419, 472, 512, 791
MspR9I	CCNGG	4 cut(s)	301, 583, 1216, 1725
MunI	CAATTG	1 cut(s)	1292
Mva1269I	GAATGC	1 cut(s)	727
MvaI	CCWGG	4 cut(s)	301, 583, 1216, 1725
MvnI	CGCG	1 cut(s)	464
MwoI	GCNNNNNNNGC	4 cut(s)	189, 638, 1238, 1538
NaeI	GCCGGC	1 cut(s)	473
NgoMIV	GCCGGC	1 cut(s)	471
NheI	GCTAGC	1 cut(s)	1579
NlaIV	GGNNCC	3 cut(s)	470, 1504, 1608
NmeAIII	GCCGAG	1 cut(s)	723
NmuCI	GTSAC	1 cut(s)	244
NsiI	ATGCAT	1 cut(s)	955
NspI	RCATGY	5 cut(s)	11, 805, 1138, 1344, 1763
NspV	TTCGAA	1 cut(s)	968
PaeI	GCATGC	1 cut(s)	1344
PciI	ACATGT	2 cut(s)	7, 1134
PciSI	GCTCTTC	1 cut(s)	1539
PcsI	WCGNNNNNNNCGW	1 cut(s)	815
PctI	GAATGC	1 cut(s)	727
PdiI	GCCGGC	1 cut(s)	473
PdmI	GAANNNNTTC	1 cut(s)	777
PfeI	GAWTC	1 cut(s)	108
PfoI	TCCNGGA	1 cut(s)	1214
PkrI	GCNGC	7 cut(s)	1234, 1290, 1332, 1346, 1585, 1678, 1722
PscI	ACATGT	2 cut(s)	7, 1134
Psp6I	CCWGG	4 cut(s)	299, 581, 1214, 1723
PspGI	CCWGG	4 cut(s)	299, 581, 1214, 1723
PspN4I	GGNNCC	3 cut(s)	470, 1504, 1608
PspPI	GGNCC	3 cut(s)	627, 1503, 1607
PstI	CTGCAG	1 cut(s)	1588
PsuI	RGATCY	1 cut(s)	1655
RsaI	GTAC	6 cut(s)	61, 272, 461, 930, 1110, 1857
RsaNI	GTAC	6 cut(s)	60, 271, 460, 929, 1109, 1856
RseI	CAYNNNNRTG	2 cut(s)	1133, 1251
SapI	GCTCTTC	1 cut(s)	1539
SaqAI	TTAA	6 cut(s)	387, 573, 851, 1269, 1598, 1692
SatI	GCNGC	7 cut(s)	1233, 1289, 1331, 1345, 1584, 1677, 1721
Sau96I	GGNCC	3 cut(s)	627, 1503, 1607
ScrFI	CCNGG	4 cut(s)	301, 583, 1216, 1725
SduI	GDGCHC	1 cut(s)	1534
SfaNI	GCATC	8 cut(s)	313, 498, 591, 684, 777, 940, 1526, 1606
SfcI	CTRYAG	2 cut(s)	130, 1584
SfuI	TTCGAA	1 cut(s)	968
SinI	GGWCC	3 cut(s)	627, 1503, 1607
SmiMI	CAYNNNNRTG	2 cut(s)	1133, 1251
SmlI	CTYRAG	3 cut(s)	37, 1024, 1490
SmoI	CTYRAG	3 cut(s)	37, 1024, 1490
SphI	GCATGC	1 cut(s)	1344
Sse9I	AATT	5 cut(s)	1266, 1292, 1522, 1663, 1893
SsiI	CCGC	8 cut(s)	208, 282, 363, 564, 630, 641, 856, 1288
SspMI	CTAG	5 cut(s)	554, 675, 1167, 1580, 1653
StyD4I	CCNGG	4 cut(s)	299, 581, 1214, 1723
StyI	CCWWGG	1 cut(s)	354
TaaI	ACNGT	5 cut(s)	134, 259, 541, 777, 1093
TaiI	ACGT	4 cut(s)	150, 243, 251, 1066
TaqI	TCGA	6 cut(s)	219, 666, 968, 1190, 1456, 1551
TasI	AATT	5 cut(s)	1266, 1292, 1522, 1663, 1893
TatI	WGTACW	2 cut(s)	928, 1108
TauI	GCSGC	1 cut(s)	1291
TfiI	GAWTC	1 cut(s)	108
Tru1I	TTAA	6 cut(s)	387, 573, 851, 1269, 1598, 1692
Tru9I	TTAA	6 cut(s)	387, 573, 851, 1269, 1598, 1692
TscAI	CASTG	2 cut(s)	139, 925
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	6 cut(s)	1232, 1330, 1344, 1583, 1676, 1720
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	7 cut(s)	29, 684, 960, 1296, 1712, 1853, 1896
TspGWI	ACGGA	1 cut(s)	397
TspRI	CASTG	2 cut(s)	139, 925
VpaK11BI	GGWCC	3 cut(s)	627, 1503, 1607
XceI	RCATGY	5 cut(s)	11, 805, 1138, 1344, 1763
XcmI	CCANNNNNNNNNTGG	1 cut(s)	145
XmnI	GAANNNNTTC	1 cut(s)	777
XspI	CTAG	5 cut(s)	554, 675, 1167, 1580, 1653
ZraI	GACGTC	1 cut(s)	1064
Zsp2I	ATGCAT	1 cut(s)	955

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.