Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000907.1

Orthogroup ID

OG0012039

Physical Location & Seq

Genomic Coordinates Reverse (-)

21032 .. 21673

Gene Structure 642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000907.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

atggggtgcaaaccagatgatgttacttatgtggggctgctttctgcatgcagccatgctggtttggtggaggagggactaaatctttttgatgagcttcttagagatgggtcaatacaagtgagggaagatcattacacttgcctagttgatctttgtggtcgagcaggaaggctgaaggaggcttttggtatcctcgagaagcttgcgaccaacccatcagcatctaattggggcgctcttcttgctggatttattgatcatcataacatggatactgggaagctagctgcagagaagctcttaaaggagggaccagatgatgcaggcaggtactcgttgttgtggagtttttttgctagatctgggaattggagagaagctgcaaagatgaggataaaaatgaaagagaaggggttgaaaaaccagcccggttgcagtttgatagaagttggaaatatggtgcatgtgtttgtggttggtgataagtctcattgccaatctcaacttatatattctgcactttacgatttacataaacaaatgaagaagattgggtatataccaagcaatgatttgaatgtacatgaagatttttcaattacaggaattcttacttgggatatcttcagacttatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

213

Amino Acids

23.72

Weight (kDa)

6.23

Isoelectric Point (pI)

22.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35030
fragaria_vesca	FvH4_7g06880 FvH4_7g06880
prunus_persica	Prupe.7G042800_v2.0.a1
pyrus_communis	pycom12g07780
rosa_chinensis	RchiOBHm_Chr1g0336641 RchiOBHm_Chr1g0336671
rosa_laevigata	RLG00000029341 RLG00000029342
rosa_multiflora	Rmu_co8277885.1_g000001 Rmu_sc0000907.1_g000005 Rmu_sc0000907.1_g000007
rosa_roxburghii	Rroxscaffold_4G00315400
rosa_rugosa	Rorug01G0127400 Rorug04G0097200
rosa_samantha	Rh1AG148300 Rh1BG116300 Rh1CG139700
rosa_wichuraiana	Rw1G011980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	321
AcsI	RAATTY	1 cut(s)	609
AcuI	CTGAAG	2 cut(s)	197, 613
AfaI	GTAC	2 cut(s)	335, 585
AgsI	TTSAA	3 cut(s)	421, 580, 600
AjuI	GAANNNNNNNTTGG	2 cut(s)	601, 633
AluBI	AGCT	6 cut(s)	97, 205, 286, 290, 301, 383
AluI	AGCT	6 cut(s)	97, 205, 286, 290, 301, 383
Alw26I	GTCTC	1 cut(s)	495
Ama87I	CYCGRG	1 cut(s)	197
ApeKI	GCWGC	4 cut(s)	37, 51, 290, 383
ApoI	RAATTY	1 cut(s)	609
AspLEI	GCGC	1 cut(s)	239
AspS9I	GGNCC	1 cut(s)	314
AsuC2I	CCSGG	1 cut(s)	432
AsuHPI	GGTGA	1 cut(s)	494
AsuNHI	GCTAGC	1 cut(s)	286
AvaI	CYCGRG	1 cut(s)	197
AvaII	GGWCC	1 cut(s)	314
BbvI	GCAGC	4 cut(s)	24, 63, 277, 370
BccI	CCATC	2 cut(s)	101, 226
BcgI	CGANNNNNNTGC	2 cut(s)	188, 222
BciVI	GTATCC	2 cut(s)	203, 268
BclI	TGATCA	1 cut(s)	259
BcnI	CCSGG	1 cut(s)	432
BcoDI	GTCTC	1 cut(s)	495
BfaI	CTAG	3 cut(s)	146, 287, 360
BfmI	CTRYAG	1 cut(s)	291
BfoI	RGCGCY	1 cut(s)	240
BfuAI	ACCTGC	1 cut(s)	321
BfuI	GTATCC	2 cut(s)	203, 268
BglII	AGATCT	1 cut(s)	362
BisI	GCNGC	4 cut(s)	38, 52, 291, 384
BlsI	GCNGC	4 cut(s)	39, 53, 292, 385
Bme1390I	CCNGG	1 cut(s)	432
Bme18I	GGWCC	1 cut(s)	314
BmeT110I	CYCGRG	1 cut(s)	197
BmgT120I	GGNCC	1 cut(s)	314
BmiI	GGNNCC	1 cut(s)	315
BmrFI	CCNGG	1 cut(s)	432
BmrI	ACTGGG	1 cut(s)	288
BmsI	GCATC	2 cut(s)	233, 313
BmtI	GCTAGC	1 cut(s)	290
BmuI	ACTGGG	1 cut(s)	288
BpuMI	CCSGG	1 cut(s)	432
Bse1I	ACTGG	1 cut(s)	283
Bse3DI	GCAATG	2 cut(s)	493, 577
BseMI	GCAATG	2 cut(s)	493, 577
BseNI	ACTGG	1 cut(s)	283
BseRI	GAGGAG	1 cut(s)	86
BseXI	GCAGC	4 cut(s)	24, 63, 277, 370
BsgI	GTGCAG	1 cut(s)	504
BsiHKCI	CYCGRG	1 cut(s)	197
BsiSI	CCGG	1 cut(s)	432
BslFI	GGGAC	2 cut(s)	90, 327
BsmAI	GTCTC	1 cut(s)	495
BsmFI	GGGAC	2 cut(s)	90, 327
BsoBI	CYCGRG	1 cut(s)	197
Bsp1407I	TGTACA	1 cut(s)	583
Bsp143I	GATC	4 cut(s)	130, 151, 259, 362
BspLI	GGNNCC	1 cut(s)	315
BspMAI	CTGCAG	1 cut(s)	295
BspMI	ACCTGC	1 cut(s)	321
BspOI	GCTAGC	1 cut(s)	290
BspQI	GCTCTTC	1 cut(s)	246
BsrDI	GCAATG	2 cut(s)	493, 577
BsrGI	TGTACA	1 cut(s)	583
BsrI	ACTGG	1 cut(s)	283
BssMI	GATC	4 cut(s)	130, 151, 259, 362
Bst6I	CTCTTC	1 cut(s)	246
BstAUI	TGTACA	1 cut(s)	583
BstC8I	GCNNGC	4 cut(s)	49, 207, 288, 328
BstDEI	CTNAG	1 cut(s)	101
BstH2I	RGCGCY	1 cut(s)	240
BstHHI	GCGC	1 cut(s)	239
BstKTI	GATC	4 cut(s)	133, 154, 262, 365
BstMAI	GTCTC	1 cut(s)	495
BstMBI	GATC	4 cut(s)	130, 151, 259, 362
BstMWI	GCNNNNNNNGC	1 cut(s)	245
BstNSI	RCATGY	2 cut(s)	51, 470
BstSCI	CCNGG	1 cut(s)	430
BstSFI	CTRYAG	1 cut(s)	291
BstV1I	GCAGC	4 cut(s)	24, 63, 277, 370
BstX2I	RGATCY	1 cut(s)	362
BstYI	RGATCY	1 cut(s)	362
BsuI	GTATCC	2 cut(s)	203, 268
BveI	ACCTGC	1 cut(s)	321
Cac8I	GCNNGC	4 cut(s)	49, 207, 288, 328
CfoI	GCGC	1 cut(s)	239
Cfr13I	GGNCC	1 cut(s)	314
Csp6I	GTAC	2 cut(s)	334, 584
CviAII	CATG	5 cut(s)	48, 56, 271, 467, 587
CviQI	GTAC	2 cut(s)	334, 584
DdeI	CTNAG	1 cut(s)	101
DpnI	GATC	4 cut(s)	132, 153, 261, 364
DpnII	GATC	4 cut(s)	130, 151, 259, 362
Eam1104I	CTCTTC	1 cut(s)	246
EarI	CTCTTC	1 cut(s)	246
Eco32I	GATATC	1 cut(s)	625
Eco47I	GGWCC	1 cut(s)	314
Eco57I	CTGAAG	2 cut(s)	197, 613
Eco88I	CYCGRG	1 cut(s)	197
EcoRI	GAATTC	1 cut(s)	609
EcoRV	GATATC	1 cut(s)	625
FaeI	CATG	5 cut(s)	51, 59, 274, 470, 590
FaqI	GGGAC	2 cut(s)	90, 327
FatI	CATG	5 cut(s)	47, 55, 270, 466, 586
FbaI	TGATCA	1 cut(s)	259
Fnu4HI	GCNGC	4 cut(s)	38, 52, 291, 384
Fsp4HI	GCNGC	4 cut(s)	38, 52, 291, 384
FspBI	CTAG	3 cut(s)	146, 287, 360
GlaI	GCGC	1 cut(s)	238
GluI	GCNGC	4 cut(s)	38, 52, 291, 384
HaeII	RGCGCY	1 cut(s)	240
HapII	CCGG	1 cut(s)	432
HhaI	GCGC	1 cut(s)	239
Hin1II	CATG	5 cut(s)	51, 59, 274, 470, 590
Hin6I	GCGC	1 cut(s)	237
HinP1I	GCGC	1 cut(s)	237
HindIII	AAGCTT	1 cut(s)	203
HpaII	CCGG	1 cut(s)	432
HphI	GGTGA	1 cut(s)	494
Hpy188I	TCNGA	1 cut(s)	632
Hpy188III	TCNNGA	1 cut(s)	199
HpyAV	CCTTC	3 cut(s)	165, 172, 406
HpyCH4V	TGCA	9 cut(s)	9, 47, 51, 293, 326, 386, 438, 466, 521
HpyF10VI	GCNNNNNNNGC	1 cut(s)	245
HpyF3I	CTNAG	1 cut(s)	101
Hsp92II	CATG	5 cut(s)	51, 59, 274, 470, 590
HspAI	GCGC	1 cut(s)	237
Ksp22I	TGATCA	1 cut(s)	259
Kzo9I	GATC	4 cut(s)	130, 151, 259, 362
LguI	GCTCTTC	1 cut(s)	246
Lsp1109I	GCAGC	4 cut(s)	24, 63, 277, 370
LweI	GCATC	2 cut(s)	233, 313
MaeI	CTAG	3 cut(s)	146, 287, 360
MaeIII	GTNAC	1 cut(s)	22
MalI	GATC	4 cut(s)	132, 153, 261, 364
MboI	GATC	4 cut(s)	130, 151, 259, 362
MboII	GAAGA	6 cut(s)	140, 233, 559, 562, 602, 619
MflI	RGATCY	1 cut(s)	362
MluCI	AATT	4 cut(s)	229, 370, 600, 609
MmeI	TCCRAC	1 cut(s)	433
MnlI	CCTC	7 cut(s)	64, 67, 117, 175, 206, 304, 387
MseI	TTAA	1 cut(s)	305
MspI	CCGG	1 cut(s)	432
MspR9I	CCNGG	1 cut(s)	432
MwoI	GCNNNNNNNGC	1 cut(s)	245
NciI	CCSGG	1 cut(s)	432
NdeII	GATC	4 cut(s)	130, 151, 259, 362
NheI	GCTAGC	1 cut(s)	286
NlaIII	CATG	5 cut(s)	51, 59, 274, 470, 590
NlaIV	GGNNCC	1 cut(s)	315
NspI	RCATGY	2 cut(s)	51, 470
PaeI	GCATGC	1 cut(s)	51
PaeR7I	CTCGAG	1 cut(s)	197
PciSI	GCTCTTC	1 cut(s)	246
PkrI	GCNGC	4 cut(s)	39, 53, 292, 385
PspN4I	GGNNCC	1 cut(s)	315
PspPI	GGNCC	1 cut(s)	314
PstI	CTGCAG	1 cut(s)	295
PsuI	RGATCY	1 cut(s)	362
RsaI	GTAC	2 cut(s)	335, 585
RsaNI	GTAC	2 cut(s)	334, 584
SapI	GCTCTTC	1 cut(s)	246
SaqAI	TTAA	1 cut(s)	305
SatI	GCNGC	4 cut(s)	38, 52, 291, 384
Sau3AI	GATC	4 cut(s)	130, 151, 259, 362
Sau96I	GGNCC	1 cut(s)	314
ScrFI	CCNGG	1 cut(s)	432
SetI	ASST	7 cut(s)	99, 207, 288, 292, 303, 335, 385
SfaNI	GCATC	2 cut(s)	233, 313
SfcI	CTRYAG	1 cut(s)	291
Sfr274I	CTCGAG	1 cut(s)	197
SinI	GGWCC	1 cut(s)	314
SlaI	CTCGAG	1 cut(s)	197
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
SphI	GCATGC	1 cut(s)	51
Sse9I	AATT	4 cut(s)	229, 370, 600, 609
SspMI	CTAG	3 cut(s)	146, 287, 360
StyD4I	CCNGG	1 cut(s)	430
TaqI	TCGA	2 cut(s)	163, 198
TasI	AATT	4 cut(s)	229, 370, 600, 609
TatI	WGTACW	1 cut(s)	583
Tru1I	TTAA	1 cut(s)	305
Tru9I	TTAA	1 cut(s)	305
TseI	GCWGC	4 cut(s)	37, 51, 290, 383
TspDTI	ATGAA	3 cut(s)	419, 560, 603
VpaK11BI	GGWCC	1 cut(s)	314
XapI	RAATTY	1 cut(s)	609
XceI	RCATGY	2 cut(s)	51, 470
XhoI	CTCGAG	1 cut(s)	197
XspI	CTAG	3 cut(s)	146, 287, 360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.