RLG00000029341

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0012039
Physical Location & Seq
Forward (+)
36749494 .. 36752546
3053 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029341

Sequence Viewer

Length: 1725 bp
ATGACACATGTTATCAACAGAGTCAGATCACCACTCTTTCGTTTCCCTCAGGCTCTCCGTACTCCCAGACTTGCATACAGCTCCATGACCCAGAAAGCCTCACCCAGAATCACAACGCCAGACAGAGACTACAGCGCTAGCTCCGACGTGGCCAAATCCAACTGGCTGATCACGAAGCTCAGCAGAGACGGTAAAGTCGGAGAAGCACGCCAAGTGTTCGACGAAATGCCTGAGAGAGATGTGGTGACGTGGACGACGGTGATCACGGCGTACGTCAAATGCGGGATGGTGGAGGAGGCCAGGAGGCTGTTCGATAGAGCCGATGCTATGAAGAATGTCATCACGTGGACTGCATTGGTTGGCGGGTATATAAGGTTGAGGCGGATTAAGGAGGCTGAGTGGTTGTTCTATCAAATGCCGGTGAGGAATGTGGTTTCTTGGAACACTATGATTGATGGGTACGCGAGGAGCCGGCAGGTTGATCAGGCGTTGGAGTTGTTTGAGAGGATGCCGGAGAGGAATGTGGTTTCTTGGAACACGGTTTTGACGGCTCTGGCGCAATGCGGGAGGATTGAGGAGGCCAGGAGGCTGTTTAGTTTGATGCCAGAAAGGGATGTTATTTCGTGGACCGCAATGGTTGCGGGGTTTTCAAGAAATGGCAGGATCGATGAAGCTAGAGAAGTTTTTGATAGGATGCCTAGAAGGAATGTGGTCTCGTGGAATGCAATGATCACGGGTTATGCTCAGAATGGGAGGCTGGAGGAGGCTCTTGAACTGTTTGAGAGGATGCCGGAGAGGGACATGCCTTCGTGGAATACGATGGTTACTGGCTTTATTCAGAATGGGGATTTAAAGCGCGCGTGGGACTTGTTTATTCAAATGCCACAGAAGAATGTCATATCATGGACTACAGTGATTACTGGGTATGTACAAGATGGGAGAAATGAAGATGCATTGATGATTTTTTCGAAAATGGTGGCTGATAATGGGGTGAGACCTAATCAGGGAACTTTTGTCAGTATCTTGAGTGCTTGTAGTAACGCAGCTGGTCTTTGTGAGGGACGTCAAATACATCAGATGATAACTAAAACAGTTTATCAGGAATGTGTACATTTGGTGTCTGCACTCATAAACATGTATTCAAAATGTGGTGAGTTAGTCTCTGCTAGGAAGATGTTTGAAGATGGATCGACAATCCACAGGGATTTTATCTCCTGGAATGGAATGATTGCAGCCTATGCACATCATGGATGTGGTATTGAGGCAATTAACTTGTATAATGAAATGCGGCAATTGGGGTGCAAACCTGATGATGTTACTTATGTGGGGGTTCTTTCTGCATGCAGCCATGCTGGTTTGGTGGAGAAGGGACTAAATCTTTTTGATGAGCTTCTTAGAGATGGGTCAATACAAGTGAGGGAAGATCATTACACTTGCTTAGTTGATCTTTGTGGTCGAGCAGGGAGGCTGAAGGAGGCTTTTGATATCCTTGAGAAACTTGGGACCAACCCATCAGCATCTAATTGGGGGGCTCTGCTTGCTGGATGTATTGATCATCATAACATGGATACCGGGAAGCTAGCTGCTGAGAAGCTTTTAAAGGAGGGACCAGATGATGCAGGCACAACCGGTGGTTACCTCTATTACAGCAATGTGACCATCTCATCTATCTTCTGGCAGGCACATAAATCTTATGCAGAGTGGCTTGACAGCAATAGTAGCTAA

Protein Analysis

575

Amino Acids

64.93

Weight (kDa)

6.62

Isoelectric Point (pI)

36.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 79 - 105 4.6e-06 PPR repeat family
PPR PF01535 82 - 106 1.5e-06 PPR repeat
PPR_1 PF12854 142 - 170 7.8e-08 PPR repeat
PPR_2 PF13041 142 - 175 1.4e-09 PPR repeat family
PPR PF01535 145 - 175 1.1e-09 PPR repeat
PPR_2 PF13041 173 - 205 1.5e-06 PPR repeat family
PPR PF01535 176 - 205 2.2e-06 PPR repeat
PPR_2 PF13041 204 - 237 2.8e-06 PPR repeat family
PPR_1 PF12854 204 - 232 1.6e-06 PPR repeat
PPR PF01535 207 - 237 4.9e-08 PPR repeat
PPR_2 PF13041 235 - 268 2.2e-09 PPR repeat family
PPR_1 PF12854 236 - 263 2.3e-08 PPR repeat
PPR PF01535 238 - 267 5.8e-11 PPR repeat
PPR_2 PF13041 269 - 299 5.9e-06 PPR repeat family
PPR_2 PF13041 297 - 346 6e-10 PPR repeat family
PPR_3 PF13812 297 - 347 6e-06 Pentatricopeptide repeat domain
PPR_long PF17177 316 - 501 1.7e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 402 - 449 1.6e-11 PPR repeat family
PPR PF01535 404 - 434 2.1e-07 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 194
AatII GACGTC 1 cut(s) 1066
Acc36I ACCTGC 1 cut(s) 466
AccII CGCG 3 cut(s) 464, 858, 860
AciI CCGC 7 cut(s) 282, 363, 382, 564, 630, 641, 1288
AclWI GGATC 2 cut(s) 671, 1195
AcoI YGGCCR 1 cut(s) 150
AcuI CTGAAG 1 cut(s) 1490
AcvI CACGTG 1 cut(s) 345
AcyI GRCGYC 1 cut(s) 1063
AfaI GTAC 5 cut(s) 61, 272, 461, 930, 1110
AfeI AGCGCT 1 cut(s) 136
AfiI CCNNNNNNNGG 1 cut(s) 1004
AflIII ACRYGT 2 cut(s) 7, 1134
AgeI ACCGGT 1 cut(s) 1628
AgsI TTSAA 5 cut(s) 651, 773, 878, 1143, 1181
AjiI CACGTC 2 cut(s) 148, 249
AjnI CCWGG 3 cut(s) 299, 581, 1214
Alw26I GTCTC 5 cut(s) 120, 180, 718, 988, 1165
AlwI GGATC 2 cut(s) 671, 1195
Aor51HI AGCGCT 1 cut(s) 136
AoxI GGCC 3 cut(s) 150, 297, 579
ApeKI GCWGC 4 cut(s) 1043, 1232, 1344, 1583
AsiGI ACCGGT 1 cut(s) 1628
AspLEI GCGC 4 cut(s) 137, 559, 858, 860
AspS9I GGNCC 3 cut(s) 627, 1503, 1607
AsuC2I CCSGG 1 cut(s) 1573
AsuHPI GGTGA 7 cut(s) 21, 93, 256, 271, 433, 1003, 1163
AsuII TTCGAA 1 cut(s) 968
AsuNHI GCTAGC 2 cut(s) 137, 1579
AvaII GGWCC 3 cut(s) 627, 1503, 1607
AxyI CCTNAGG 1 cut(s) 48
BalI TGGCCA 1 cut(s) 152
BanII GRGCYC 1 cut(s) 1534
BauI CACGAG 1 cut(s) 715
BbrPI CACGTG 1 cut(s) 345
BbvI GCAGC 4 cut(s) 1055, 1244, 1356, 1570
BccI CCATC 8 cut(s) 280, 449, 814, 929, 1178, 1394, 1519, 1667
BceAI ACGGC 2 cut(s) 282, 564
BciT130I CCWGG 3 cut(s) 301, 583, 1216
BciVI GTATCC 1 cut(s) 1561
BclI TGATCA 5 cut(s) 168, 261, 481, 729, 1552
BcnI CCSGG 1 cut(s) 1573
BcoDI GTCTC 5 cut(s) 120, 180, 718, 988, 1165
BfaI CTAG 5 cut(s) 138, 675, 699, 1167, 1580
BfmI CTRYAG 2 cut(s) 130, 909
BfoI RGCGCY 1 cut(s) 138
BfuAI ACCTGC 1 cut(s) 466
BfuI GTATCC 1 cut(s) 1561
BisI GCNGC 5 cut(s) 1044, 1233, 1289, 1345, 1584
BlpI GCTNAGC 1 cut(s) 179
BlsI GCNGC 5 cut(s) 1045, 1234, 1290, 1346, 1585
Bme1390I CCNGG 4 cut(s) 301, 583, 1216, 1573
Bme18I GGWCC 3 cut(s) 627, 1503, 1607
BmgBI CACGTC 2 cut(s) 148, 249
BmgT120I GGNCC 3 cut(s) 627, 1503, 1607
BmiI GGNNCC 3 cut(s) 470, 1504, 1608
BmrFI CCNGG 4 cut(s) 301, 583, 1216, 1573
BmrI ACTGGG 1 cut(s) 930
BmsI GCATC 8 cut(s) 313, 498, 591, 684, 777, 940, 1526, 1606
BmtI GCTAGC 2 cut(s) 141, 1583
BmuI ACTGGG 1 cut(s) 930
BplI GAGNNNNNCTC 2 cut(s) 1145, 1177
BpmI CTGGAG 1 cut(s) 779
Bpu1102I GCTNAGC 1 cut(s) 179
Bpu14I TTCGAA 1 cut(s) 968
BpuEI CTTGAG 2 cut(s) 1045, 1511
BpuMI CCSGG 1 cut(s) 1573
Bsa29I ATCGAT 1 cut(s) 666
BsaAI YACGTR 1 cut(s) 345
BsaHI GRCGYC 1 cut(s) 1063
BsaI GGTCTC 2 cut(s) 718, 988
BsaWI WCCGGW 1 cut(s) 1628
BsaXI ACNNNNNCTCC 2 cut(s) 383, 413
Bsc4I CCNNNNNNNGG 1 cut(s) 1004
Bse118I RCCGGY 3 cut(s) 418, 471, 1628
Bse1I ACTGG 3 cut(s) 167, 832, 925
Bse21I CCTNAGG 1 cut(s) 48
Bse3DI GCAATG 4 cut(s) 566, 639, 732, 1657
BseBI CCWGG 3 cut(s) 301, 583, 1216
BseCI ATCGAT 1 cut(s) 666
BseGI GGATG 7 cut(s) 291, 513, 619, 699, 792, 1256, 1550
BseLI CCNNNNNNNGG 1 cut(s) 1004
BseMI GCAATG 4 cut(s) 566, 639, 732, 1657
BseMII CTCAG 6 cut(s) 62, 193, 222, 387, 758, 1578
BseNI ACTGG 3 cut(s) 167, 832, 925
BsePI GCGCGC 1 cut(s) 856
BseRI GAGGAG 4 cut(s) 308, 481, 590, 776
BseXI GCAGC 4 cut(s) 1055, 1244, 1356, 1570
BsgI GTGCAG 1 cut(s) 1107
Bsh1236I CGCG 3 cut(s) 464, 858, 860
BshFI GGCC 3 cut(s) 152, 299, 581
BshTI ACCGGT 1 cut(s) 1628
BshVI ATCGAT 1 cut(s) 666
BsiSI CCGG 6 cut(s) 419, 472, 512, 791, 1572, 1629
BsiWI CGTACG 1 cut(s) 270
BslFI GGGAC 6 cut(s) 812, 878, 1074, 1383, 1516, 1620
BslI CCNNNNNNNGG 1 cut(s) 1004
BsmAI GTCTC 5 cut(s) 120, 180, 718, 988, 1165
BsmBI CGTCTC 1 cut(s) 180
BsmFI GGGAC 6 cut(s) 812, 878, 1074, 1383, 1516, 1620
BsmI GAATGC 1 cut(s) 727
BsnI GGCC 3 cut(s) 152, 299, 581
Bso31I GGTCTC 2 cut(s) 718, 988
Bsp119I TTCGAA 1 cut(s) 968
Bsp1286I GDGCHC 1 cut(s) 1534
Bsp1407I TGTACA 2 cut(s) 928, 1108
Bsp1720I GCTNAGC 1 cut(s) 179
BspACI CCGC 7 cut(s) 282, 363, 382, 564, 630, 641, 1288
BspANI GGCC 3 cut(s) 152, 299, 581
BspCNI CTCAG 6 cut(s) 61, 192, 223, 388, 757, 1579
BspDI ATCGAT 1 cut(s) 666
BspFNI CGCG 3 cut(s) 464, 858, 860
BspLI GGNNCC 3 cut(s) 470, 1504, 1608
BspMI ACCTGC 1 cut(s) 466
BspOI GCTAGC 2 cut(s) 141, 1583
BspPI GGATC 2 cut(s) 671, 1195
BspT104I TTCGAA 1 cut(s) 968
BspTNI GGTCTC 2 cut(s) 718, 988
BsrDI GCAATG 4 cut(s) 566, 639, 732, 1657
BsrFI RCCGGY 3 cut(s) 418, 471, 1628
BsrGI TGTACA 2 cut(s) 928, 1108
BsrI ACTGG 3 cut(s) 167, 832, 925
BssAI RCCGGY 3 cut(s) 418, 471, 1628
BssHII GCGCGC 1 cut(s) 856
BssNI GRCGYC 1 cut(s) 1063
BssSI CACGAG 1 cut(s) 715
Bst2BI CACGAG 1 cut(s) 715
Bst2UI CCWGG 3 cut(s) 301, 583, 1216
Bst4CI ACNGT 6 cut(s) 191, 259, 541, 777, 913, 1093
BstACI GRCGYC 1 cut(s) 1063
BstAPI GCANNNNNTGC 2 cut(s) 638, 1238
BstAUI TGTACA 2 cut(s) 928, 1108
BstBAI YACGTR 1 cut(s) 345
BstBI TTCGAA 1 cut(s) 968
BstC8I GCNNGC 9 cut(s) 139, 208, 473, 858, 1342, 1539, 1581, 1621, 1680
BstDEI CTNAG 8 cut(s) 48, 179, 231, 396, 744, 1394, 1438, 1587
BstEII GGTNACC 1 cut(s) 1634
BstF5I GGATG 7 cut(s) 291, 513, 619, 699, 792, 1256, 1550
BstFNI CGCG 3 cut(s) 464, 858, 860
BstH2I RGCGCY 1 cut(s) 138
BstHHI GCGC 4 cut(s) 137, 559, 858, 860
BstMAI GTCTC 5 cut(s) 120, 180, 718, 988, 1165
BstMWI GCNNNNNNNGC 4 cut(s) 638, 1238, 1538, 1719
BstNI CCWGG 3 cut(s) 301, 583, 1216
BstNSI RCATGY 4 cut(s) 11, 805, 1138, 1344
BstPI GGTNACC 1 cut(s) 1634
BstSCI CCNGG 4 cut(s) 299, 581, 1214, 1571
BstSFI CTRYAG 2 cut(s) 130, 909
BstUI CGCG 3 cut(s) 464, 858, 860
BstV1I GCAGC 4 cut(s) 1055, 1244, 1356, 1570
Bsu15I ATCGAT 1 cut(s) 666
Bsu36I CCTNAGG 1 cut(s) 48
BsuI GTATCC 1 cut(s) 1561
BsuRI GGCC 3 cut(s) 152, 299, 581
BsuTUI ATCGAT 1 cut(s) 666
BtrI CACGTC 2 cut(s) 148, 249
BtsCI GGATG 7 cut(s) 291, 513, 619, 699, 792, 1256, 1550
BtsIMutI CAGTG 1 cut(s) 918
BveI ACCTGC 1 cut(s) 466
Cac8I GCNNGC 9 cut(s) 139, 208, 473, 858, 1342, 1539, 1581, 1621, 1680
CfoI GCGC 4 cut(s) 137, 559, 858, 860
Cfr10I RCCGGY 3 cut(s) 418, 471, 1628
Cfr13I GGNCC 3 cut(s) 627, 1503, 1607
ClaI ATCGAT 1 cut(s) 666
Csp6I GTAC 5 cut(s) 60, 271, 460, 929, 1109
CspAI ACCGGT 1 cut(s) 1628
CviAII CATG 9 cut(s) 8, 85, 802, 903, 1135, 1247, 1341, 1349, 1564
CviQI GTAC 5 cut(s) 60, 271, 460, 929, 1109
DdeI CTNAG 8 cut(s) 48, 179, 231, 396, 744, 1394, 1438, 1587
DraI TTTAAA 2 cut(s) 852, 1599
DrdI GACNNNNNNGTC 1 cut(s) 194
DseDI GACNNNNNNGTC 1 cut(s) 194
EaeI YGGCCR 1 cut(s) 150
EciI GGCGGA 1 cut(s) 397
Eco24I GRGCYC 1 cut(s) 1534
Eco31I GGTCTC 2 cut(s) 718, 988
Eco32I GATATC 1 cut(s) 1486
Eco47I GGWCC 3 cut(s) 627, 1503, 1607
Eco47III AGCGCT 1 cut(s) 136
Eco57I CTGAAG 1 cut(s) 1490
Eco72I CACGTG 1 cut(s) 345
Eco81I CCTNAGG 1 cut(s) 48
Eco91I GGTNACC 1 cut(s) 1634
EcoO65I GGTNACC 1 cut(s) 1634
EcoRII CCWGG 3 cut(s) 299, 581, 1214
EcoRV GATATC 1 cut(s) 1486
EcoT22I ATGCAT 1 cut(s) 955
EcoT38I GRGCYC 1 cut(s) 1534
Esp3I CGTCTC 1 cut(s) 180
FaeI CATG 9 cut(s) 11, 88, 805, 906, 1138, 1250, 1344, 1352, 1567
FaqI GGGAC 6 cut(s) 812, 878, 1074, 1383, 1516, 1620
FatI CATG 9 cut(s) 7, 84, 801, 902, 1134, 1246, 1340, 1348, 1563
FauI CCCGC 4 cut(s) 275, 356, 557, 634
FbaI TGATCA 5 cut(s) 168, 261, 481, 729, 1552
Fnu4HI GCNGC 5 cut(s) 1044, 1233, 1289, 1345, 1584
FokI GGATG 7 cut(s) 298, 520, 626, 706, 799, 1263, 1557
FriOI GRGCYC 1 cut(s) 1534
Fsp4HI GCNGC 5 cut(s) 1044, 1233, 1289, 1345, 1584
FspBI CTAG 5 cut(s) 138, 675, 699, 1167, 1580
GlaI GCGC 4 cut(s) 136, 558, 857, 859
GluI GCNGC 5 cut(s) 1044, 1233, 1289, 1345, 1584
GsuI CTGGAG 1 cut(s) 779
HaeII RGCGCY 1 cut(s) 138
HaeIII GGCC 3 cut(s) 152, 299, 581
HapII CCGG 6 cut(s) 419, 472, 512, 791, 1572, 1629
HhaI GCGC 4 cut(s) 137, 559, 858, 860
Hin1I GRCGYC 1 cut(s) 1063
Hin1II CATG 9 cut(s) 11, 88, 805, 906, 1138, 1250, 1344, 1352, 1567
Hin6I GCGC 4 cut(s) 135, 557, 856, 858
HinP1I GCGC 4 cut(s) 135, 557, 856, 858
HindIII AAGCTT 1 cut(s) 1592
HinfI GANTC 2 cut(s) 21, 108
HpaII CCGG 6 cut(s) 419, 472, 512, 791, 1572, 1629
HphI GGTGA 7 cut(s) 21, 93, 256, 271, 433, 1003, 1163
Hpy166II GTNNAC 4 cut(s) 252, 348, 627, 1109
Hpy188I TCNGA 6 cut(s) 26, 145, 200, 747, 840, 1077
Hpy188III TCNNGA 5 cut(s) 172, 651, 770, 1024, 1100
Hpy8I GTNNAC 4 cut(s) 252, 348, 627, 1109
Hpy99I CGWCG 3 cut(s) 149, 224, 259
HpyAV CCTTC 4 cut(s) 696, 816, 1360, 1465
HpyCH4III ACNGT 6 cut(s) 191, 259, 541, 777, 913, 1093
HpyCH4IV ACGT 5 cut(s) 147, 248, 273, 344, 1063
HpyF10VI GCNNNNNNNGC 4 cut(s) 638, 1238, 1538, 1719
HpyF3I CTNAG 8 cut(s) 48, 179, 231, 396, 744, 1394, 1438, 1587
HpySE526I ACGT 5 cut(s) 147, 248, 273, 344, 1063
Hsp92I GRCGYC 1 cut(s) 1063
Hsp92II CATG 9 cut(s) 11, 88, 805, 906, 1138, 1250, 1344, 1352, 1567
HspAI GCGC 4 cut(s) 135, 557, 856, 858
KroI GCCGGC 1 cut(s) 471
KroNI GCCGGC 1 cut(s) 473
Ksp22I TGATCA 5 cut(s) 168, 261, 481, 729, 1552
LmnI GCTCC 3 cut(s) 86, 146, 468
Lsp1109I GCAGC 4 cut(s) 1055, 1244, 1356, 1570
LweI GCATC 8 cut(s) 313, 498, 591, 684, 777, 940, 1526, 1606
MaeI CTAG 5 cut(s) 138, 675, 699, 1167, 1580
MaeII ACGT 5 cut(s) 147, 248, 273, 344, 1063
MaeIII GTNAC 6 cut(s) 244, 823, 1037, 1315, 1634, 1654
MboII GAAGA 7 cut(s) 343, 901, 959, 1183, 1193, 1433, 1663
MfeI CAATTG 1 cut(s) 1292
MhlI GDGCHC 1 cut(s) 1534
MlsI TGGCCA 1 cut(s) 152
MluCI AATT 3 cut(s) 1266, 1292, 1522
MluNI TGGCCA 1 cut(s) 152
MlyI GAGTC 1 cut(s) 30
MmeI TCCRAC 4 cut(s) 168, 178, 183, 471
Mox20I TGGCCA 1 cut(s) 152
Mph1103I ATGCAT 1 cut(s) 955
MroNI GCCGGC 1 cut(s) 471
MscI TGGCCA 1 cut(s) 152
MseI TTAA 4 cut(s) 387, 851, 1269, 1598
MslI CAYNNNNRTG 2 cut(s) 1133, 1251
Msp20I TGGCCA 1 cut(s) 152
MspA1I CMGCKG 1 cut(s) 1046
MspI CCGG 6 cut(s) 419, 472, 512, 791, 1572, 1629
MspR9I CCNGG 4 cut(s) 301, 583, 1216, 1573
MunI CAATTG 1 cut(s) 1292
Mva1269I GAATGC 1 cut(s) 727
MvaI CCWGG 3 cut(s) 301, 583, 1216
MvnI CGCG 3 cut(s) 464, 858, 860
MwoI GCNNNNNNNGC 4 cut(s) 638, 1238, 1538, 1719
NaeI GCCGGC 1 cut(s) 473
NciI CCSGG 1 cut(s) 1573
NgoMIV GCCGGC 1 cut(s) 471
NheI GCTAGC 2 cut(s) 137, 1579
NlaIII CATG 9 cut(s) 11, 88, 805, 906, 1138, 1250, 1344, 1352, 1567
NlaIV GGNNCC 3 cut(s) 470, 1504, 1608
NmuCI GTSAC 2 cut(s) 244, 1654
NsiI ATGCAT 1 cut(s) 955
NspI RCATGY 4 cut(s) 11, 805, 1138, 1344
NspV TTCGAA 1 cut(s) 968
PaeI GCATGC 1 cut(s) 1344
PauI GCGCGC 1 cut(s) 856
PciI ACATGT 2 cut(s) 7, 1134
PcsI WCGNNNNNNNCGW 2 cut(s) 318, 815
PctI GAATGC 1 cut(s) 727
PdiI GCCGGC 1 cut(s) 473
PfeI GAWTC 1 cut(s) 108
Pfl23II CGTACG 1 cut(s) 270
PfoI TCCNGGA 1 cut(s) 1214
PinAI ACCGGT 1 cut(s) 1628
PkrI GCNGC 5 cut(s) 1045, 1234, 1290, 1346, 1585
PleI GAGTC 1 cut(s) 29
PmaCI CACGTG 1 cut(s) 345
PmlI CACGTG 1 cut(s) 345
PpsI GAGTC 1 cut(s) 29
Ppu21I YACGTR 1 cut(s) 345
PscI ACATGT 2 cut(s) 7, 1134
Psp6I CCWGG 3 cut(s) 299, 581, 1214
PspCI CACGTG 1 cut(s) 345
PspEI GGTNACC 1 cut(s) 1634
PspGI CCWGG 3 cut(s) 299, 581, 1214
PspLI CGTACG 1 cut(s) 270
PspN4I GGNNCC 3 cut(s) 470, 1504, 1608
PspPI GGNCC 3 cut(s) 627, 1503, 1607
PteI GCGCGC 1 cut(s) 856
PvuII CAGCTG 1 cut(s) 1046
RsaI GTAC 5 cut(s) 61, 272, 461, 930, 1110
RsaNI GTAC 5 cut(s) 60, 271, 460, 929, 1109
RseI CAYNNNNRTG 2 cut(s) 1133, 1251
SaqAI TTAA 4 cut(s) 387, 851, 1269, 1598
SatI GCNGC 5 cut(s) 1044, 1233, 1289, 1345, 1584
Sau96I GGNCC 3 cut(s) 627, 1503, 1607
SchI GAGTC 1 cut(s) 30
ScrFI CCNGG 4 cut(s) 301, 583, 1216, 1573
SduI GDGCHC 1 cut(s) 1534
SfaNI GCATC 8 cut(s) 313, 498, 591, 684, 777, 940, 1526, 1606
SfcI CTRYAG 2 cut(s) 130, 909
SfuI TTCGAA 1 cut(s) 968
SinI GGWCC 3 cut(s) 627, 1503, 1607
SmiMI CAYNNNNRTG 2 cut(s) 1133, 1251
SmlI CTYRAG 2 cut(s) 1024, 1490
SmoI CTYRAG 2 cut(s) 1024, 1490
SphI GCATGC 1 cut(s) 1344
Sse9I AATT 3 cut(s) 1266, 1292, 1522
SsiI CCGC 7 cut(s) 282, 363, 382, 564, 630, 641, 1288
SspMI CTAG 5 cut(s) 138, 675, 699, 1167, 1580
StyD4I CCNGG 4 cut(s) 299, 581, 1214, 1571
TaaI ACNGT 6 cut(s) 191, 259, 541, 777, 913, 1093
TaiI ACGT 5 cut(s) 150, 251, 276, 347, 1066
TaqI TCGA 6 cut(s) 219, 312, 666, 968, 1190, 1456
TasI AATT 3 cut(s) 1266, 1292, 1522
TatI WGTACW 2 cut(s) 928, 1108
TauI GCSGC 1 cut(s) 1291
TfiI GAWTC 1 cut(s) 108
Tru1I TTAA 4 cut(s) 387, 851, 1269, 1598
Tru9I TTAA 4 cut(s) 387, 851, 1269, 1598
TscAI CASTG 1 cut(s) 918
TseFI GTSAC 2 cut(s) 244, 1654
TseI GCWGC 4 cut(s) 1043, 1232, 1344, 1583
Tsp45I GTSAC 2 cut(s) 244, 1654
TspDTI ATGAA 4 cut(s) 344, 684, 960, 1296
TspGWI ACGGA 1 cut(s) 47
TspRI CASTG 1 cut(s) 918
VpaK11BI GGWCC 3 cut(s) 627, 1503, 1607
XceI RCATGY 4 cut(s) 11, 805, 1138, 1344
XspI CTAG 5 cut(s) 138, 675, 699, 1167, 1580
ZraI GACGTC 1 cut(s) 1064
Zsp2I ATGCAT 1 cut(s) 955
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.