Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G35030 |
| fragaria_vesca | FvH4_7g06880 FvH4_7g06880 |
| prunus_persica | Prupe.7G042800_v2.0.a1 |
| pyrus_communis | pycom12g07780 |
| rosa_chinensis | RchiOBHm_Chr1g0336641 RchiOBHm_Chr1g0336671 |
| rosa_laevigata | RLG00000029341 RLG00000029342 |
| rosa_multiflora | Rmu_co8277885.1_g000001 Rmu_sc0000907.1_g000005 Rmu_sc0000907.1_g000007 |
| rosa_roxburghii | Rroxscaffold_4G00315400 |
| rosa_rugosa | Rorug01G0127400 Rorug04G0097200 |
| rosa_samantha | Rh1AG148300 Rh1BG116300 Rh1CG139700 |
| rosa_wichuraiana | Rw1G011980 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 140 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 506 |
| AciI | CCGC | 2 cut(s) | 41, 44 |
| AclWI | GGATC | 2 cut(s) | 474, 487 |
| AcuI | CTGAAG | 2 cut(s) | 447, 535 |
| AfaI | GTAC | 1 cut(s) | 157 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 101, 506 |
| AflIII | ACRYGT | 2 cut(s) | 391, 600 |
| AgsI | TTSAA | 5 cut(s) | 87, 111, 153, 181, 619 |
| AluBI | AGCT | 5 cut(s) | 36, 63, 107, 216, 549 |
| AluI | AGCT | 5 cut(s) | 36, 63, 107, 216, 549 |
| Alw21I | GWGCWC | 1 cut(s) | 301 |
| Alw26I | GTCTC | 2 cut(s) | 448, 580 |
| Alw44I | GTGCAC | 1 cut(s) | 297 |
| AlwI | GGATC | 2 cut(s) | 474, 487 |
| ApaLI | GTGCAC | 1 cut(s) | 297 |
| ApeKI | GCWGC | 3 cut(s) | 63, 229, 494 |
| BaeGI | GKGCMC | 1 cut(s) | 301 |
| BamHI | GGATCC | 1 cut(s) | 479 |
| Bbv12I | GWGCWC | 1 cut(s) | 301 |
| BbvI | GCAGC | 3 cut(s) | 50, 216, 481 |
| BceAI | ACGGC | 1 cut(s) | 628 |
| BciVI | GTATCC | 1 cut(s) | 566 |
| BcoDI | GTCTC | 2 cut(s) | 448, 580 |
| BfaI | CTAG | 3 cut(s) | 302, 410, 473 |
| BfuI | GTATCC | 1 cut(s) | 566 |
| BisI | GCNGC | 4 cut(s) | 42, 64, 230, 495 |
| BlsI | GCNGC | 4 cut(s) | 43, 65, 231, 496 |
| BmcAI | AGTACT | 1 cut(s) | 157 |
| BmiI | GGNNCC | 1 cut(s) | 481 |
| BmrI | ACTGGG | 1 cut(s) | 476 |
| BmsI | GCATC | 2 cut(s) | 127, 241 |
| BmuI | ACTGGG | 1 cut(s) | 476 |
| BpmI | CTGGAG | 1 cut(s) | 43 |
| BpuEI | CTTGAG | 1 cut(s) | 335 |
| BsaI | GGTCTC | 1 cut(s) | 580 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 101, 506 |
| Bse1I | ACTGG | 2 cut(s) | 391, 471 |
| Bse3DI | GCAATG | 1 cut(s) | 367 |
| BseGI | GGATG | 1 cut(s) | 544 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 101, 506 |
| BseMI | GCAATG | 1 cut(s) | 367 |
| BseMII | CTCAG | 1 cut(s) | 344 |
| BseNI | ACTGG | 2 cut(s) | 391, 471 |
| BseSI | GKGCMC | 1 cut(s) | 301 |
| BseXI | GCAGC | 3 cut(s) | 50, 216, 481 |
| BsgI | GTGCAG | 1 cut(s) | 480 |
| BsiHKAI | GWGCWC | 1 cut(s) | 301 |
| BslFI | GGGAC | 1 cut(s) | 483 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 101, 506 |
| BsmAI | GTCTC | 2 cut(s) | 448, 580 |
| BsmBI | CGTCTC | 1 cut(s) | 448 |
| BsmFI | GGGAC | 1 cut(s) | 483 |
| Bso31I | GGTCTC | 1 cut(s) | 580 |
| Bsp1286I | GDGCHC | 1 cut(s) | 301 |
| Bsp143I | GATC | 2 cut(s) | 346, 479 |
| BspACI | CCGC | 2 cut(s) | 41, 44 |
| BspCNI | CTCAG | 1 cut(s) | 343 |
| BspLI | GGNNCC | 1 cut(s) | 481 |
| BspPI | GGATC | 2 cut(s) | 474, 487 |
| BspTNI | GGTCTC | 1 cut(s) | 580 |
| BsrDI | GCAATG | 1 cut(s) | 367 |
| BsrI | ACTGG | 2 cut(s) | 391, 471 |
| BssMI | GATC | 2 cut(s) | 346, 479 |
| Bst6I | CTCTTC | 1 cut(s) | 216 |
| BstDEI | CTNAG | 2 cut(s) | 217, 330 |
| BstF5I | GGATG | 1 cut(s) | 544 |
| BstKTI | GATC | 2 cut(s) | 349, 482 |
| BstMAI | GTCTC | 2 cut(s) | 448, 580 |
| BstMBI | GATC | 2 cut(s) | 346, 479 |
| BstNSI | RCATGY | 3 cut(s) | 150, 395, 604 |
| BstSLI | GKGCMC | 1 cut(s) | 301 |
| BstV1I | GCAGC | 3 cut(s) | 50, 216, 481 |
| BstX2I | RGATCY | 1 cut(s) | 479 |
| BstYI | RGATCY | 1 cut(s) | 479 |
| BsuI | GTATCC | 1 cut(s) | 566 |
| BtsCI | GGATG | 1 cut(s) | 544 |
| BtsIMutI | CAGTG | 2 cut(s) | 464, 591 |
| Csp6I | GTAC | 1 cut(s) | 156 |
| CviAII | CATG | 4 cut(s) | 147, 202, 392, 601 |
| CviQI | GTAC | 1 cut(s) | 156 |
| DdeI | CTNAG | 2 cut(s) | 217, 330 |
| DpnI | GATC | 2 cut(s) | 348, 481 |
| DpnII | GATC | 2 cut(s) | 346, 479 |
| Eam1104I | CTCTTC | 1 cut(s) | 216 |
| EarI | CTCTTC | 1 cut(s) | 216 |
| Eco31I | GGTCTC | 1 cut(s) | 580 |
| Eco57I | CTGAAG | 2 cut(s) | 447, 535 |
| Esp3I | CGTCTC | 1 cut(s) | 448 |
| FaeI | CATG | 4 cut(s) | 150, 205, 395, 604 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 599, 631 |
| FaqI | GGGAC | 1 cut(s) | 483 |
| FatI | CATG | 4 cut(s) | 146, 201, 391, 600 |
| FauNDI | CATATG | 1 cut(s) | 532 |
| Fnu4HI | GCNGC | 4 cut(s) | 42, 64, 230, 495 |
| FokI | GGATG | 1 cut(s) | 551 |
| Fsp4HI | GCNGC | 4 cut(s) | 42, 64, 230, 495 |
| FspBI | CTAG | 3 cut(s) | 302, 410, 473 |
| GluI | GCNGC | 4 cut(s) | 42, 64, 230, 495 |
| GsuI | CTGGAG | 1 cut(s) | 43 |
| Hin1II | CATG | 4 cut(s) | 150, 205, 395, 604 |
| HincII | GTYRAC | 1 cut(s) | 528 |
| HindII | GTYRAC | 1 cut(s) | 528 |
| HindIII | AAGCTT | 1 cut(s) | 214 |
| HinfI | GANTC | 1 cut(s) | 91 |
| Hpy166II | GTNNAC | 3 cut(s) | 299, 528, 576 |
| Hpy188I | TCNGA | 3 cut(s) | 333, 400, 427 |
| Hpy188III | TCNNGA | 1 cut(s) | 133 |
| Hpy8I | GTNNAC | 3 cut(s) | 299, 528, 576 |
| HpyAV | CCTTC | 1 cut(s) | 632 |
| HpyCH4IV | ACGT | 1 cut(s) | 441 |
| HpyCH4V | TGCA | 7 cut(s) | 10, 74, 146, 232, 299, 449, 497 |
| HpyF3I | CTNAG | 2 cut(s) | 217, 330 |
| HpySE526I | ACGT | 1 cut(s) | 441 |
| Hsp92II | CATG | 4 cut(s) | 150, 205, 395, 604 |
| Kzo9I | GATC | 2 cut(s) | 346, 479 |
| LmnI | GCTCC | 1 cut(s) | 104 |
| LpnPI | CCDG | 7 cut(s) | 73, 173, 276, 372, 452, 513, 564 |
| Lsp1109I | GCAGC | 3 cut(s) | 50, 216, 481 |
| LweI | GCATC | 2 cut(s) | 127, 241 |
| MaeI | CTAG | 3 cut(s) | 302, 410, 473 |
| MaeII | ACGT | 1 cut(s) | 441 |
| MaeIII | GTNAC | 2 cut(s) | 256, 430 |
| MalI | GATC | 2 cut(s) | 348, 481 |
| MboI | GATC | 2 cut(s) | 346, 479 |
| MboII | GAAGA | 2 cut(s) | 233, 302 |
| MflI | RGATCY | 1 cut(s) | 479 |
| MhlI | GDGCHC | 1 cut(s) | 301 |
| MluCI | AATT | 2 cut(s) | 11, 112 |
| MnlI | CCTC | 2 cut(s) | 470, 569 |
| MseI | TTAA | 1 cut(s) | 606 |
| MspA1I | CMGCKG | 1 cut(s) | 63 |
| NdeI | CATATG | 1 cut(s) | 532 |
| NdeII | GATC | 2 cut(s) | 346, 479 |
| NlaIII | CATG | 4 cut(s) | 150, 205, 395, 604 |
| NlaIV | GGNNCC | 1 cut(s) | 481 |
| NmuCI | GTSAC | 1 cut(s) | 256 |
| NspI | RCATGY | 3 cut(s) | 150, 395, 604 |
| PciI | ACATGT | 2 cut(s) | 391, 600 |
| PfeI | GAWTC | 1 cut(s) | 91 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 506 |
| PkrI | GCNGC | 4 cut(s) | 43, 65, 231, 496 |
| PscI | ACATGT | 2 cut(s) | 391, 600 |
| PsiI | TTATAA | 1 cut(s) | 140 |
| PspN4I | GGNNCC | 1 cut(s) | 481 |
| PsuI | RGATCY | 1 cut(s) | 479 |
| PvuII | CAGCTG | 1 cut(s) | 63 |
| RsaI | GTAC | 1 cut(s) | 157 |
| RsaNI | GTAC | 1 cut(s) | 156 |
| SaqAI | TTAA | 1 cut(s) | 606 |
| SatI | GCNGC | 4 cut(s) | 42, 64, 230, 495 |
| Sau3AI | GATC | 2 cut(s) | 346, 479 |
| ScaI | AGTACT | 1 cut(s) | 157 |
| SduI | GDGCHC | 1 cut(s) | 301 |
| SetI | ASST | 8 cut(s) | 38, 65, 109, 218, 419, 444, 551, 624 |
| SfaNI | GCATC | 2 cut(s) | 127, 241 |
| SmlI | CTYRAG | 1 cut(s) | 350 |
| SmoI | CTYRAG | 1 cut(s) | 350 |
| Sse9I | AATT | 2 cut(s) | 11, 112 |
| SsiI | CCGC | 2 cut(s) | 41, 44 |
| SspMI | CTAG | 3 cut(s) | 302, 410, 473 |
| TaiI | ACGT | 1 cut(s) | 444 |
| TaqI | TCGA | 1 cut(s) | 121 |
| TasI | AATT | 2 cut(s) | 11, 112 |
| TatI | WGTACW | 1 cut(s) | 155 |
| TauI | GCSGC | 1 cut(s) | 44 |
| TfiI | GAWTC | 1 cut(s) | 91 |
| Tru1I | TTAA | 1 cut(s) | 606 |
| Tru9I | TTAA | 1 cut(s) | 606 |
| TscAI | CASTG | 2 cut(s) | 471, 598 |
| TseFI | GTSAC | 1 cut(s) | 256 |
| TseI | GCWGC | 3 cut(s) | 63, 229, 494 |
| Tsp45I | GTSAC | 1 cut(s) | 256 |
| TspDTI | ATGAA | 4 cut(s) | 190, 302, 329, 614 |
| TspRI | CASTG | 2 cut(s) | 471, 598 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 506 |
| VneI | GTGCAC | 1 cut(s) | 297 |
| XceI | RCATGY | 3 cut(s) | 150, 395, 604 |
| XspI | CTAG | 3 cut(s) | 302, 410, 473 |
| ZrmI | AGTACT | 1 cut(s) | 157 |