Rh1CG139700

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0012039
Physical Location & Seq
Reverse (-)
30471786 .. 30474716
2931 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG139700.1

Sequence Viewer

Length: 1128 bp
ATGCCGGACAGAGACTACAGTGCCAGCTCCGACGTGGCCAAGTCCAACTGGCTGATCACGAAGCTCAGCAGAGACGGCAAAGTTGGAGAAGCCCGCCAGGTGTTCGACGAAATGCCTGAGAGAGACGTGGTGACGTGGACGACGGTGATCACGGCGTACATCAAGTGCGGGATGGTGGAGGAGGCCAGGAGGCTGTTTGATAGACCCGATGCTGAGAAGAATGTCATCACTTGGACTGCCTTGGTCGGCGGGTATATAAGGCTGAGGCGGATTAAGGAGGCTGAGTGGTTGTTCTATCAAATGCCGGTGAGGAATGTGGTTTCTTGGAACACTATGATTGATGGGTACGCGAGGAGCCGGCAGGTTGATCAGGCGTTGGAGTTGTTTGAGAGGATGCCGGAGAGGAATGTGGTTTCTTGGAACACGGTTTTGACGGCTCTGGCGCAATGCGGGAGGATTGAGGAGGCCAGGAGGCTGTTTGGTTTGATGCCGGAAAGGGATGTTATTTCGTGGACCGCAATGGTTGCGGGGTTTTCAAGAAATGGCAGGATTGATGAAGCTAGAGAAGTTTTTGATAGGATGCCTAGAAGGAATGTGGTCTCGTGGAATGCAATGATCACGGGGAGGCTGAAGGAGGCTTTTGACATCCTTGAGAAACTTGGGACCAACCCATCAGCATCTAATTGGGGGGCTCTTCTTGCTGGATGTATTGATCATCGTAACATGGATACCGGGAAGCTAGTTGCTGAGAAGCTTTTAAAGGAGGGACCAGATGATGCAGGCAGTTACTCGTTGTTGTGGAACTTTTATGCTAGATCTGGGAATTGGAGAGAAGCTGCAAAGATGAGGATTAAAATGAAAGAGAAGGGGTTGAAAAAGCAGCCTGGTTGCAGTTGGATAGAAATTGGAAATATGGTGCATGTGTTTGTGGTCGGTGATAAGTCTCATTGCCAATCTCAACCTATATATTCTGCACTTCACGATTTACATAAACAAATGAAGAAGATTGGCGGCCAATCTCTAGCAGCAACCGGTGGTTACCTCTATTACAGCAATGTGACCATCTCATCTATCTTCTGGCAGGCACATAAATCTTATGCAGAGTGGCTTGACAGCAATAGTAGCTAA

Protein Analysis

375

Amino Acids

42.8

Weight (kDa)

9.04

Isoelectric Point (pI)

41.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 41 - 67 3.9e-06 PPR repeat family
PPR PF01535 44 - 68 3.2e-06 PPR repeat
PPR_2 PF13041 104 - 137 8.5e-10 PPR repeat family
PPR_1 PF12854 104 - 132 4.6e-08 PPR repeat
PPR PF01535 107 - 137 6.2e-10 PPR repeat
PPR_2 PF13041 135 - 168 2.6e-06 PPR repeat family
PPR PF01535 138 - 167 1.5e-06 PPR repeat
PPR_2 PF13041 166 - 199 1.6e-06 PPR repeat family
PPR_1 PF12854 166 - 194 8.6e-07 PPR repeat
PPR PF01535 169 - 199 2.8e-08 PPR repeat
E_motif PF20431 239 - 301 5.8e-17 E motif
Eplus_motif PF20430 306 - 333 5.4e-06 E+ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 352
AccII CGCG 1 cut(s) 350
AciI CCGC 8 cut(s) 94, 168, 249, 268, 450, 516, 527, 1011
AcoI YGGCCR 2 cut(s) 36, 1012
AcuI CTGAAG 1 cut(s) 650
AfaI GTAC 2 cut(s) 158, 347
AgeI ACCGGT 1 cut(s) 1031
AgsI TTSAA 2 cut(s) 537, 874
AjiI CACGTC 3 cut(s) 34, 127, 135
AjnI CCWGG 4 cut(s) 96, 185, 467, 883
AluBI AGCT 7 cut(s) 27, 64, 560, 739, 754, 836, 1125
AluI AGCT 7 cut(s) 27, 64, 560, 739, 754, 836, 1125
Alw26I GTCTC 5 cut(s) 6, 66, 117, 604, 948
AoxI GGCC 4 cut(s) 36, 183, 465, 1012
ApeKI GCWGC 3 cut(s) 836, 880, 1025
AsiGI ACCGGT 1 cut(s) 1031
AspLEI GCGC 1 cut(s) 445
AspS9I GGNCC 3 cut(s) 513, 663, 767
AsuC2I CCSGG 1 cut(s) 733
AsuHPI GGTGA 4 cut(s) 142, 157, 319, 947
AvaII GGWCC 3 cut(s) 513, 663, 767
BalI TGGCCA 1 cut(s) 38
BanII GRGCYC 1 cut(s) 694
BauI CACGAG 1 cut(s) 601
BbvCI CCTCAGC 1 cut(s) 263
BbvI GCAGC 3 cut(s) 823, 892, 1037
BccI CCATC 4 cut(s) 166, 335, 679, 1070
BceAI ACGGC 3 cut(s) 91, 168, 450
BciT130I CCWGG 4 cut(s) 98, 187, 469, 885
BciVI GTATCC 1 cut(s) 721
BclI TGATCA 5 cut(s) 54, 147, 367, 615, 712
BcnI CCSGG 1 cut(s) 733
BcoDI GTCTC 5 cut(s) 6, 66, 117, 604, 948
BfaI CTAG 5 cut(s) 561, 585, 740, 813, 1022
BfmI CTRYAG 1 cut(s) 16
BfuAI ACCTGC 1 cut(s) 352
BfuI GTATCC 1 cut(s) 721
BglII AGATCT 1 cut(s) 815
BisI GCNGC 4 cut(s) 837, 881, 1012, 1026
BlpI GCTNAGC 1 cut(s) 65
BlsI GCNGC 4 cut(s) 838, 882, 1013, 1027
Bme1390I CCNGG 5 cut(s) 98, 187, 469, 733, 885
Bme18I GGWCC 3 cut(s) 513, 663, 767
BmgBI CACGTC 3 cut(s) 34, 127, 135
BmgT120I GGNCC 3 cut(s) 513, 663, 767
BmiI GGNNCC 3 cut(s) 356, 664, 768
BmrFI CCNGG 5 cut(s) 98, 187, 469, 733, 885
BmsI GCATC 6 cut(s) 199, 384, 477, 570, 686, 766
Bpu10I CCTNAGC 1 cut(s) 263
Bpu1102I GCTNAGC 1 cut(s) 65
BpuEI CTTGAG 1 cut(s) 671
BpuMI CCSGG 1 cut(s) 733
BsaI GGTCTC 1 cut(s) 604
BsaJI CCNNGG 1 cut(s) 240
BsaWI WCCGGW 1 cut(s) 1031
BsaXI ACNNNNNCTCC 2 cut(s) 269, 299
Bse118I RCCGGY 3 cut(s) 304, 357, 1031
Bse1I ACTGG 1 cut(s) 53
Bse3DI GCAATG 5 cut(s) 452, 525, 618, 946, 1060
BseBI CCWGG 4 cut(s) 98, 187, 469, 885
BseDI CCNNGG 1 cut(s) 240
BseGI GGATG 6 cut(s) 177, 399, 505, 585, 645, 710
BseMI GCAATG 5 cut(s) 452, 525, 618, 946, 1060
BseMII CTCAG 6 cut(s) 79, 108, 204, 254, 273, 738
BseNI ACTGG 1 cut(s) 53
BseRI GAGGAG 3 cut(s) 194, 367, 476
BseXI GCAGC 3 cut(s) 823, 892, 1037
BsgI GTGCAG 1 cut(s) 957
Bsh1236I CGCG 1 cut(s) 350
BshFI GGCC 4 cut(s) 38, 185, 467, 1014
BshTI ACCGGT 1 cut(s) 1031
BsiSI CCGG 7 cut(s) 5, 305, 358, 398, 491, 732, 1032
BslFI GGGAC 2 cut(s) 676, 780
BsmAI GTCTC 5 cut(s) 6, 66, 117, 604, 948
BsmBI CGTCTC 2 cut(s) 66, 117
BsmFI GGGAC 2 cut(s) 676, 780
BsmI GAATGC 1 cut(s) 613
BsnI GGCC 4 cut(s) 38, 185, 467, 1014
Bso31I GGTCTC 1 cut(s) 604
Bsp1286I GDGCHC 1 cut(s) 694
Bsp143I GATC 6 cut(s) 54, 147, 367, 615, 712, 815
Bsp1720I GCTNAGC 1 cut(s) 65
BspACI CCGC 8 cut(s) 94, 168, 249, 268, 450, 516, 527, 1011
BspANI GGCC 4 cut(s) 38, 185, 467, 1014
BspCNI CTCAG 6 cut(s) 78, 109, 205, 255, 274, 739
BspFNI CGCG 1 cut(s) 350
BspLI GGNNCC 3 cut(s) 356, 664, 768
BspMI ACCTGC 1 cut(s) 352
BspQI GCTCTTC 1 cut(s) 699
BspTNI GGTCTC 1 cut(s) 604
BsrDI GCAATG 5 cut(s) 452, 525, 618, 946, 1060
BsrFI RCCGGY 3 cut(s) 304, 357, 1031
BsrI ACTGG 1 cut(s) 53
BssAI RCCGGY 3 cut(s) 304, 357, 1031
BssECI CCNNGG 1 cut(s) 240
BssMI GATC 6 cut(s) 54, 147, 367, 615, 712, 815
BssSI CACGAG 1 cut(s) 601
BssT1I CCWWGG 1 cut(s) 240
Bst2BI CACGAG 1 cut(s) 601
Bst2UI CCWGG 4 cut(s) 98, 187, 469, 885
Bst4CI ACNGT 3 cut(s) 20, 145, 427
Bst6I CTCTTC 1 cut(s) 699
BstAPI GCANNNNNTGC 1 cut(s) 524
BstC8I GCNNGC 5 cut(s) 25, 94, 359, 781, 1083
BstDEI CTNAG 6 cut(s) 65, 117, 213, 263, 282, 747
BstEII GGTNACC 1 cut(s) 1037
BstF5I GGATG 6 cut(s) 177, 399, 505, 585, 645, 710
BstFNI CGCG 1 cut(s) 350
BstHHI GCGC 1 cut(s) 445
BstKTI GATC 6 cut(s) 57, 150, 370, 618, 715, 818
BstMAI GTCTC 5 cut(s) 6, 66, 117, 604, 948
BstMBI GATC 6 cut(s) 54, 147, 367, 615, 712, 815
BstMWI GCNNNNNNNGC 4 cut(s) 75, 524, 698, 1122
BstNI CCWGG 4 cut(s) 98, 187, 469, 885
BstNSI RCATGY 1 cut(s) 923
BstPI GGTNACC 1 cut(s) 1037
BstSCI CCNGG 5 cut(s) 96, 185, 467, 731, 883
BstSFI CTRYAG 1 cut(s) 16
BstUI CGCG 1 cut(s) 350
BstV1I GCAGC 3 cut(s) 823, 892, 1037
BstX2I RGATCY 1 cut(s) 815
BstYI RGATCY 1 cut(s) 815
BsuI GTATCC 1 cut(s) 721
BsuRI GGCC 4 cut(s) 38, 185, 467, 1014
BtrI CACGTC 3 cut(s) 34, 127, 135
BtsCI GGATG 6 cut(s) 177, 399, 505, 585, 645, 710
BtsIMutI CAGTG 1 cut(s) 25
BveI ACCTGC 1 cut(s) 352
Cac8I GCNNGC 5 cut(s) 25, 94, 359, 781, 1083
CfoI GCGC 1 cut(s) 445
Cfr10I RCCGGY 3 cut(s) 304, 357, 1031
Cfr13I GGNCC 3 cut(s) 513, 663, 767
Csp6I GTAC 2 cut(s) 157, 346
CspAI ACCGGT 1 cut(s) 1031
CviAII CATG 2 cut(s) 724, 920
CviQI GTAC 2 cut(s) 157, 346
DdeI CTNAG 6 cut(s) 65, 117, 213, 263, 282, 747
DpnI GATC 6 cut(s) 56, 149, 369, 617, 714, 817
DpnII GATC 6 cut(s) 54, 147, 367, 615, 712, 815
DraI TTTAAA 1 cut(s) 759
EaeI YGGCCR 2 cut(s) 36, 1012
Eam1104I CTCTTC 1 cut(s) 699
EarI CTCTTC 1 cut(s) 699
EciI GGCGGA 1 cut(s) 283
Eco130I CCWWGG 1 cut(s) 240
Eco24I GRGCYC 1 cut(s) 694
Eco31I GGTCTC 1 cut(s) 604
Eco47I GGWCC 3 cut(s) 513, 663, 767
Eco57I CTGAAG 1 cut(s) 650
Eco91I GGTNACC 1 cut(s) 1037
EcoO65I GGTNACC 1 cut(s) 1037
EcoRII CCWGG 4 cut(s) 96, 185, 467, 883
EcoT14I CCWWGG 1 cut(s) 240
EcoT38I GRGCYC 1 cut(s) 694
ErhI CCWWGG 1 cut(s) 240
Esp3I CGTCTC 2 cut(s) 66, 117
FaeI CATG 2 cut(s) 727, 923
FaqI GGGAC 2 cut(s) 676, 780
FatI CATG 2 cut(s) 723, 919
FauI CCCGC 5 cut(s) 101, 161, 242, 443, 520
FbaI TGATCA 5 cut(s) 54, 147, 367, 615, 712
Fnu4HI GCNGC 4 cut(s) 837, 881, 1012, 1026
FokI GGATG 6 cut(s) 184, 406, 512, 592, 632, 717
FriOI GRGCYC 1 cut(s) 694
Fsp4HI GCNGC 4 cut(s) 837, 881, 1012, 1026
FspBI CTAG 5 cut(s) 561, 585, 740, 813, 1022
GlaI GCGC 1 cut(s) 444
GluI GCNGC 4 cut(s) 837, 881, 1012, 1026
HaeIII GGCC 4 cut(s) 38, 185, 467, 1014
HapII CCGG 7 cut(s) 5, 305, 358, 398, 491, 732, 1032
HhaI GCGC 1 cut(s) 445
Hin1II CATG 2 cut(s) 727, 923
Hin6I GCGC 1 cut(s) 443
HinP1I GCGC 1 cut(s) 443
HindIII AAGCTT 1 cut(s) 752
HpaII CCGG 7 cut(s) 5, 305, 358, 398, 491, 732, 1032
HphI GGTGA 4 cut(s) 142, 157, 319, 947
Hpy166II GTNNAC 2 cut(s) 138, 513
Hpy188I TCNGA 1 cut(s) 31
Hpy188III TCNNGA 3 cut(s) 58, 537, 980
Hpy8I GTNNAC 2 cut(s) 138, 513
Hpy99I CGWCG 3 cut(s) 35, 110, 145
HpyAV CCTTC 3 cut(s) 582, 625, 859
HpyCH4III ACNGT 3 cut(s) 20, 145, 427
HpyCH4IV ACGT 3 cut(s) 33, 126, 134
HpyCH4V TGCA 7 cut(s) 611, 779, 839, 891, 919, 974, 1100
HpyF10VI GCNNNNNNNGC 4 cut(s) 75, 524, 698, 1122
HpyF3I CTNAG 6 cut(s) 65, 117, 213, 263, 282, 747
HpySE526I ACGT 3 cut(s) 33, 126, 134
Hsp92II CATG 2 cut(s) 727, 923
HspAI GCGC 1 cut(s) 443
KroI GCCGGC 1 cut(s) 357
KroNI GCCGGC 1 cut(s) 359
Ksp22I TGATCA 5 cut(s) 54, 147, 367, 615, 712
Kzo9I GATC 6 cut(s) 54, 147, 367, 615, 712, 815
LguI GCTCTTC 1 cut(s) 699
LmnI GCTCC 2 cut(s) 32, 354
Lsp1109I GCAGC 3 cut(s) 823, 892, 1037
LweI GCATC 6 cut(s) 199, 384, 477, 570, 686, 766
MaeI CTAG 5 cut(s) 561, 585, 740, 813, 1022
MaeII ACGT 3 cut(s) 33, 126, 134
MaeIII GTNAC 5 cut(s) 130, 719, 785, 1037, 1057
MalI GATC 6 cut(s) 56, 149, 369, 617, 714, 817
MboI GATC 6 cut(s) 54, 147, 367, 615, 712, 815
MboII GAAGA 5 cut(s) 229, 686, 1012, 1015, 1066
MflI RGATCY 1 cut(s) 815
MhlI GDGCHC 1 cut(s) 694
MlsI TGGCCA 1 cut(s) 38
MluCI AATT 3 cut(s) 682, 823, 903
MluNI TGGCCA 1 cut(s) 38
MmeI TCCRAC 5 cut(s) 54, 64, 69, 357, 875
Mox20I TGGCCA 1 cut(s) 38
MroNI GCCGGC 1 cut(s) 357
MscI TGGCCA 1 cut(s) 38
MseI TTAA 3 cut(s) 273, 758, 852
Msp20I TGGCCA 1 cut(s) 38
MspI CCGG 7 cut(s) 5, 305, 358, 398, 491, 732, 1032
MspR9I CCNGG 5 cut(s) 98, 187, 469, 733, 885
Mva1269I GAATGC 1 cut(s) 613
MvaI CCWGG 4 cut(s) 98, 187, 469, 885
MvnI CGCG 1 cut(s) 350
MwoI GCNNNNNNNGC 4 cut(s) 75, 524, 698, 1122
NaeI GCCGGC 1 cut(s) 359
NciI CCSGG 1 cut(s) 733
NdeII GATC 6 cut(s) 54, 147, 367, 615, 712, 815
NgoMIV GCCGGC 1 cut(s) 357
NlaIII CATG 2 cut(s) 727, 923
NlaIV GGNNCC 3 cut(s) 356, 664, 768
NmuCI GTSAC 2 cut(s) 130, 1057
NspI RCATGY 1 cut(s) 923
PciSI GCTCTTC 1 cut(s) 699
PctI GAATGC 1 cut(s) 613
PdiI GCCGGC 1 cut(s) 359
PinAI ACCGGT 1 cut(s) 1031
PkrI GCNGC 4 cut(s) 838, 882, 1013, 1027
Psp6I CCWGG 4 cut(s) 96, 185, 467, 883
PspEI GGTNACC 1 cut(s) 1037
PspGI CCWGG 4 cut(s) 96, 185, 467, 883
PspN4I GGNNCC 3 cut(s) 356, 664, 768
PspPI GGNCC 3 cut(s) 513, 663, 767
PsuI RGATCY 1 cut(s) 815
RsaI GTAC 2 cut(s) 158, 347
RsaNI GTAC 2 cut(s) 157, 346
SapI GCTCTTC 1 cut(s) 699
SaqAI TTAA 3 cut(s) 273, 758, 852
SatI GCNGC 4 cut(s) 837, 881, 1012, 1026
Sau3AI GATC 6 cut(s) 54, 147, 367, 615, 712, 815
Sau96I GGNCC 3 cut(s) 513, 663, 767
ScrFI CCNGG 5 cut(s) 98, 187, 469, 733, 885
SduI GDGCHC 1 cut(s) 694
SfaNI GCATC 6 cut(s) 199, 384, 477, 570, 686, 766
SfcI CTRYAG 1 cut(s) 16
SinI GGWCC 3 cut(s) 513, 663, 767
SmlI CTYRAG 1 cut(s) 650
SmoI CTYRAG 1 cut(s) 650
Sse9I AATT 3 cut(s) 682, 823, 903
SsiI CCGC 8 cut(s) 94, 168, 249, 268, 450, 516, 527, 1011
SspMI CTAG 5 cut(s) 561, 585, 740, 813, 1022
StyD4I CCNGG 5 cut(s) 96, 185, 467, 731, 883
StyI CCWWGG 1 cut(s) 240
TaaI ACNGT 3 cut(s) 20, 145, 427
TaiI ACGT 3 cut(s) 36, 129, 137
TaqI TCGA 1 cut(s) 105
TasI AATT 3 cut(s) 682, 823, 903
TauI GCSGC 1 cut(s) 1014
Tru1I TTAA 3 cut(s) 273, 758, 852
Tru9I TTAA 3 cut(s) 273, 758, 852
TscAI CASTG 1 cut(s) 25
TseFI GTSAC 2 cut(s) 130, 1057
TseI GCWGC 3 cut(s) 836, 880, 1025
Tsp45I GTSAC 2 cut(s) 130, 1057
TspDTI ATGAA 3 cut(s) 570, 872, 1013
TspRI CASTG 1 cut(s) 25
VpaK11BI GGWCC 3 cut(s) 513, 663, 767
XceI RCATGY 1 cut(s) 923
XcmI CCANNNNNNNNNTGG 1 cut(s) 31
XspI CTAG 5 cut(s) 561, 585, 740, 813, 1022
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.