Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8277885.1

Orthogroup ID

OG0012039

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 842

Gene Structure 842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8277885.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

tgatgagcttcttagagatgggtcaatacaagtgagggaagatcattacacttgcctagttgatctttgtggtcgagcaggaaggctgaaggaggcttttggtatcctcgagaagcttgcgaccaacccatcagcatctaattggggcgctcttcttgctggatttattgatcatcataacatggatactgggaagctagctgcagagaagctcttaaaggagggaccagatgatgcaggcaggtactcgttgttgtggagtttttttgctagatctgggaattggagagaagctgcaaagatgaggataaaaatgaaagagaaggggttgaaaaaccagcccggttgcagtttgatagaagttggaaatatggtgcatgtgtttgtggttggtgataagtctcattgccaatctcaacttatatattctgcactttacgatttacataaacaaatgaagaagattgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

156

Amino Acids

17.42

Weight (kDa)

8.67

Isoelectric Point (pI)

23.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35030
fragaria_vesca	FvH4_7g06880 FvH4_7g06880
prunus_persica	Prupe.7G042800_v2.0.a1
pyrus_communis	pycom12g07780
rosa_chinensis	RchiOBHm_Chr1g0336641 RchiOBHm_Chr1g0336671
rosa_laevigata	RLG00000029341 RLG00000029342
rosa_multiflora	Rmu_co8277885.1_g000001 Rmu_sc0000907.1_g000005 Rmu_sc0000907.1_g000007
rosa_roxburghii	Rroxscaffold_4G00315400
rosa_rugosa	Rorug01G0127400 Rorug04G0097200
rosa_samantha	Rh1AG148300 Rh1BG116300 Rh1CG139700
rosa_wichuraiana	Rw1G011980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	232
AcuI	CTGAAG	1 cut(s)	108
AfaI	GTAC	1 cut(s)	246
AgsI	TTSAA	1 cut(s)	332
AluBI	AGCT	6 cut(s)	8, 116, 197, 201, 212, 294
AluI	AGCT	6 cut(s)	8, 116, 197, 201, 212, 294
Alw26I	GTCTC	1 cut(s)	406
Ama87I	CYCGRG	1 cut(s)	108
ApeKI	GCWGC	2 cut(s)	201, 294
AspLEI	GCGC	1 cut(s)	150
AspS9I	GGNCC	1 cut(s)	225
AsuC2I	CCSGG	1 cut(s)	343
AsuHPI	GGTGA	1 cut(s)	405
AsuNHI	GCTAGC	1 cut(s)	197
AvaI	CYCGRG	1 cut(s)	108
AvaII	GGWCC	1 cut(s)	225
BbvI	GCAGC	2 cut(s)	188, 281
BccI	CCATC	2 cut(s)	12, 137
BcgI	CGANNNNNNTGC	2 cut(s)	99, 133
BciVI	GTATCC	2 cut(s)	114, 179
BclI	TGATCA	1 cut(s)	170
BcnI	CCSGG	1 cut(s)	343
BcoDI	GTCTC	1 cut(s)	406
BfaI	CTAG	3 cut(s)	57, 198, 271
BfmI	CTRYAG	1 cut(s)	202
BfoI	RGCGCY	1 cut(s)	151
BfuAI	ACCTGC	1 cut(s)	232
BfuI	GTATCC	2 cut(s)	114, 179
BglII	AGATCT	1 cut(s)	273
BisI	GCNGC	2 cut(s)	202, 295
BlsI	GCNGC	2 cut(s)	203, 296
Bme1390I	CCNGG	1 cut(s)	343
Bme18I	GGWCC	1 cut(s)	225
BmeT110I	CYCGRG	1 cut(s)	108
BmgT120I	GGNCC	1 cut(s)	225
BmiI	GGNNCC	1 cut(s)	226
BmrFI	CCNGG	1 cut(s)	343
BmrI	ACTGGG	1 cut(s)	199
BmsI	GCATC	2 cut(s)	144, 224
BmtI	GCTAGC	1 cut(s)	201
BmuI	ACTGGG	1 cut(s)	199
BpuMI	CCSGG	1 cut(s)	343
Bse1I	ACTGG	1 cut(s)	194
Bse3DI	GCAATG	1 cut(s)	404
BseMI	GCAATG	1 cut(s)	404
BseNI	ACTGG	1 cut(s)	194
BseXI	GCAGC	2 cut(s)	188, 281
BsgI	GTGCAG	1 cut(s)	415
BsiHKCI	CYCGRG	1 cut(s)	108
BsiSI	CCGG	1 cut(s)	343
BslFI	GGGAC	1 cut(s)	238
BsmAI	GTCTC	1 cut(s)	406
BsmFI	GGGAC	1 cut(s)	238
BsoBI	CYCGRG	1 cut(s)	108
Bsp143I	GATC	4 cut(s)	41, 62, 170, 273
BspLI	GGNNCC	1 cut(s)	226
BspMAI	CTGCAG	1 cut(s)	206
BspMI	ACCTGC	1 cut(s)	232
BspOI	GCTAGC	1 cut(s)	201
BspQI	GCTCTTC	1 cut(s)	157
BsrDI	GCAATG	1 cut(s)	404
BsrI	ACTGG	1 cut(s)	194
BssMI	GATC	4 cut(s)	41, 62, 170, 273
Bst6I	CTCTTC	1 cut(s)	157
BstC8I	GCNNGC	3 cut(s)	118, 199, 239
BstDEI	CTNAG	1 cut(s)	12
BstH2I	RGCGCY	1 cut(s)	151
BstHHI	GCGC	1 cut(s)	150
BstKTI	GATC	4 cut(s)	44, 65, 173, 276
BstMAI	GTCTC	1 cut(s)	406
BstMBI	GATC	4 cut(s)	41, 62, 170, 273
BstMWI	GCNNNNNNNGC	1 cut(s)	156
BstNSI	RCATGY	1 cut(s)	381
BstSCI	CCNGG	1 cut(s)	341
BstSFI	CTRYAG	1 cut(s)	202
BstV1I	GCAGC	2 cut(s)	188, 281
BstX2I	RGATCY	1 cut(s)	273
BstYI	RGATCY	1 cut(s)	273
BsuI	GTATCC	2 cut(s)	114, 179
BveI	ACCTGC	1 cut(s)	232
Cac8I	GCNNGC	3 cut(s)	118, 199, 239
CfoI	GCGC	1 cut(s)	150
Cfr13I	GGNCC	1 cut(s)	225
Csp6I	GTAC	1 cut(s)	245
CviAII	CATG	2 cut(s)	182, 378
CviJI	RGCY	9 cut(s)	8, 86, 96, 116, 197, 201, 212, 294, 341
CviKI_1	RGCY	9 cut(s)	8, 86, 96, 116, 197, 201, 212, 294, 341
CviQI	GTAC	1 cut(s)	245
DdeI	CTNAG	1 cut(s)	12
DpnI	GATC	4 cut(s)	43, 64, 172, 275
DpnII	GATC	4 cut(s)	41, 62, 170, 273
Eam1104I	CTCTTC	1 cut(s)	157
EarI	CTCTTC	1 cut(s)	157
Eco47I	GGWCC	1 cut(s)	225
Eco57I	CTGAAG	1 cut(s)	108
Eco88I	CYCGRG	1 cut(s)	108
FaeI	CATG	2 cut(s)	185, 381
FaiI	YATR	7 cut(s)	178, 183, 372, 379, 423, 425, 448
FaqI	GGGAC	1 cut(s)	238
FatI	CATG	2 cut(s)	181, 377
FbaI	TGATCA	1 cut(s)	170
Fnu4HI	GCNGC	2 cut(s)	202, 295
Fsp4HI	GCNGC	2 cut(s)	202, 295
FspBI	CTAG	3 cut(s)	57, 198, 271
GlaI	GCGC	1 cut(s)	149
GluI	GCNGC	2 cut(s)	202, 295
HaeII	RGCGCY	1 cut(s)	151
HapII	CCGG	1 cut(s)	343
HhaI	GCGC	1 cut(s)	150
Hin1II	CATG	2 cut(s)	185, 381
Hin6I	GCGC	1 cut(s)	148
HinP1I	GCGC	1 cut(s)	148
HindIII	AAGCTT	1 cut(s)	114
HpaII	CCGG	1 cut(s)	343
HphI	GGTGA	1 cut(s)	405
Hpy188III	TCNNGA	1 cut(s)	110
HpyAV	CCTTC	3 cut(s)	76, 83, 317
HpyCH4V	TGCA	6 cut(s)	204, 237, 297, 349, 377, 432
HpyF10VI	GCNNNNNNNGC	1 cut(s)	156
HpyF3I	CTNAG	1 cut(s)	12
Hsp92II	CATG	2 cut(s)	185, 381
HspAI	GCGC	1 cut(s)	148
Ksp22I	TGATCA	1 cut(s)	170
Kzo9I	GATC	4 cut(s)	41, 62, 170, 273
LguI	GCTCTTC	1 cut(s)	157
LpnPI	CCDG	9 cut(s)	64, 145, 175, 223, 227, 241, 262, 351, 356
Lsp1109I	GCAGC	2 cut(s)	188, 281
LweI	GCATC	2 cut(s)	144, 224
MaeI	CTAG	3 cut(s)	57, 198, 271
MalI	GATC	4 cut(s)	43, 64, 172, 275
MboI	GATC	4 cut(s)	41, 62, 170, 273
MboII	GAAGA	2 cut(s)	51, 144
MflI	RGATCY	1 cut(s)	273
MluCI	AATT	2 cut(s)	140, 281
MmeI	TCCRAC	1 cut(s)	344
MnlI	CCTC	5 cut(s)	28, 86, 117, 215, 298
MseI	TTAA	1 cut(s)	216
MspI	CCGG	1 cut(s)	343
MspR9I	CCNGG	1 cut(s)	343
MwoI	GCNNNNNNNGC	1 cut(s)	156
NciI	CCSGG	1 cut(s)	343
NdeII	GATC	4 cut(s)	41, 62, 170, 273
NheI	GCTAGC	1 cut(s)	197
NlaIII	CATG	2 cut(s)	185, 381
NlaIV	GGNNCC	1 cut(s)	226
NspI	RCATGY	1 cut(s)	381
PaeR7I	CTCGAG	1 cut(s)	108
PciSI	GCTCTTC	1 cut(s)	157
PkrI	GCNGC	2 cut(s)	203, 296
PspN4I	GGNNCC	1 cut(s)	226
PspPI	GGNCC	1 cut(s)	225
PstI	CTGCAG	1 cut(s)	206
PsuI	RGATCY	1 cut(s)	273
RsaI	GTAC	1 cut(s)	246
RsaNI	GTAC	1 cut(s)	245
SapI	GCTCTTC	1 cut(s)	157
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	2 cut(s)	202, 295
Sau3AI	GATC	4 cut(s)	41, 62, 170, 273
Sau96I	GGNCC	1 cut(s)	225
ScrFI	CCNGG	1 cut(s)	343
SetI	ASST	7 cut(s)	10, 118, 199, 203, 214, 246, 296
SfaNI	GCATC	2 cut(s)	144, 224
SfcI	CTRYAG	1 cut(s)	202
Sfr274I	CTCGAG	1 cut(s)	108
SinI	GGWCC	1 cut(s)	225
SlaI	CTCGAG	1 cut(s)	108
SmlI	CTYRAG	1 cut(s)	108
SmoI	CTYRAG	1 cut(s)	108
Sse9I	AATT	2 cut(s)	140, 281
SspMI	CTAG	3 cut(s)	57, 198, 271
StyD4I	CCNGG	1 cut(s)	341
TaqI	TCGA	2 cut(s)	74, 109
TasI	AATT	2 cut(s)	140, 281
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TseI	GCWGC	2 cut(s)	201, 294
TspDTI	ATGAA	1 cut(s)	330
VpaK11BI	GGWCC	1 cut(s)	225
XceI	RCATGY	1 cut(s)	381
XhoI	CTCGAG	1 cut(s)	108
XspI	CTAG	3 cut(s)	57, 198, 271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.